Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Forward (+)

10722734 .. 10724573

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCACCACAGTCCATAGAACTCCCAAATCTGGTAGGCAGTCATTGTTTTTCCAAGATTTAGCTTCACCCGTATCGTCCCGGAAAGGAAAATTTTCAACTCCAGGCCAGGCAGCTGCAGTCTCTGCACTATGGCGCGAGAGCGGTGGGGGATCGGACCTTCCACCACCTCCGCTTTACACGTTGGAAGACCGCTCGGACTTCTCCCCTGAATCTGGAATTCCAGATTACCCAGTATCCCCCGAAATCAAGTCGGATCCTAGAACCCCGGTTCACAGTTTTGGGCGTGATTCCTCGACTCCGGTGAAGGGAAAATCAGAGGCAAGCACTTCGTATGCTCTATCAAACGGACACCATGTCCAACAAGGTTCAGCAAGTATGAGTTGGTGGTCACCCTCAAAGAGTGGCGGTGAGCAAGAAGAGAAGGGAAAGAGTTCACCAGTTGAGGGTGTTGTTCAGCCTCTTGCTCTGATCACTCTTCCTGAGCGGACCTCCAAGGGAAGTTGCAAGGCCAGAGATGCAAAGGAATACATTGCCTACAGCAAACCTCAACGAAGAAGAATGGGTTACTGTTTATGGATTTTCTCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

198

Amino Acids

21.32

Weight (kDa)

9.37

Isoelectric Point (pI)

69.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	144, 195, 487
AccII	CGCG	1 cut(s)	138
AciI	CCGC	5 cut(s)	144, 173, 193, 408, 487
AclWI	GGATC	3 cut(s)	160, 251, 264
AcsI	RAATTY	2 cut(s)	92, 219
AfiI	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	99
AhdI	GACNNNNNGTC	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	103, 108
AluBI	AGCT	3 cut(s)	65, 116, 591
AluI	AGCT	3 cut(s)	65, 116, 591
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	3 cut(s)	160, 251, 264
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	106, 510
ApeKI	GCWGC	2 cut(s)	113, 116
ApoI	RAATTY	2 cut(s)	92, 219
Asp700I	GAANNNNTTC	2 cut(s)	94, 433
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	157, 489
AsuC2I	CCSGG	2 cut(s)	82, 269
AsuHPI	GGTGA	5 cut(s)	60, 316, 384, 422, 429
AvaII	GGWCC	2 cut(s)	157, 489
BamHI	GGATCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	103, 125
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BciT130I	CCWGG	2 cut(s)	105, 110
BciVI	GTATCC	1 cut(s)	247
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	2 cut(s)	82, 269
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	117, 538
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme1390I	CCNGG	4 cut(s)	82, 105, 110, 269
Bme18I	GGWCC	2 cut(s)	157, 489
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	157, 489
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	4 cut(s)	82, 105, 110, 269
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	508
BmuI	ACTGGG	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	2 cut(s)	87, 571
Bpu10I	CCTNAGC	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	82, 269
BsaJI	CCNNGG	2 cut(s)	267, 495
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
Bse1I	ACTGG	2 cut(s)	233, 440
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	105, 110
BseDI	CCNNGG	2 cut(s)	267, 495
BseLI	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	233, 440
BseXI	GCAGC	2 cut(s)	103, 125
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	108, 512
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	82, 269, 302
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	4 cut(s)	32, 215, 308, 446
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	108, 512
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	152, 256, 471
BspACI	CCGC	5 cut(s)	144, 173, 193, 408, 487
BspANI	GGCC	2 cut(s)	108, 512
BspCNI	CTCAG	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	3 cut(s)	160, 251, 264
BsrBI	CCGCTC	3 cut(s)	144, 195, 487
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	233, 440
BssECI	CCNNGG	2 cut(s)	267, 495
BssMI	GATC	3 cut(s)	152, 256, 471
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	105, 110
Bst4CI	ACNGT	3 cut(s)	13, 278, 572
Bst6I	CTCTTC	2 cut(s)	414, 483
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	483
BstEII	GGTNACC	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	155, 259, 474
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	152, 256, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 518
BstNI	CCWGG	2 cut(s)	105, 110
BstPI	GGTNACC	1 cut(s)	390
BstSCI	CCNGG	4 cut(s)	80, 103, 108, 267
BstSFI	CTRYAG	2 cut(s)	117, 538
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	103, 125
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	108, 512
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	138
Cfr13I	GGNCC	2 cut(s)	157, 489
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	65, 108, 116, 460, 512, 591
CviKI_1	RGCY	6 cut(s)	65, 108, 116, 460, 512, 591
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	154, 258, 473
DpnII	GATC	3 cut(s)	152, 256, 471
DriI	GACNNNNNGTC	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	414, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	356
EarI	CTCTTC	2 cut(s)	414, 483
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	157, 489
Eco91I	GGTNACC	1 cut(s)	390
EcoO65I	GGTNACC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	103, 108
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	1 cut(s)	359
FaiI	YATR	6 cut(s)	18, 133, 336, 357, 380, 577
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	1 cut(s)	355
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	114, 117
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	114, 117
GsuI	CTGGAG	2 cut(s)	87, 571
HaeIII	GGCC	2 cut(s)	108, 512
HapII	CCGG	3 cut(s)	82, 269, 302
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	212, 290, 298
HpaII	CCGG	3 cut(s)	82, 269, 302
HphI	GGTGA	5 cut(s)	60, 316, 384, 422, 429
Hpy166II	GTNNAC	2 cut(s)	274, 437
Hpy188I	TCNGA	5 cut(s)	157, 199, 256, 319, 471
Hpy188III	TCNNGA	3 cut(s)	216, 224, 482
Hpy8I	GTNNAC	2 cut(s)	274, 437
HpyAV	CCTTC	3 cut(s)	170, 301, 418
HpyCH4III	ACNGT	3 cut(s)	13, 278, 572
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	119, 128, 507, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 518
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	3 cut(s)	152, 256, 471
Lsp1109I	GCAGC	2 cut(s)	103, 125
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	390, 566
MalI	GATC	3 cut(s)	154, 258, 473
MbiI	CCGCTC	3 cut(s)	144, 195, 487
MboI	GATC	3 cut(s)	152, 256, 471
MboII	GAAGA	5 cut(s)	200, 431, 470, 567, 570
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	92, 219
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	3 cut(s)	165, 234, 385
MnlI	CCTC	8 cut(s)	180, 304, 313, 406, 439, 471, 502, 558
MroXI	GAANNNNTTC	2 cut(s)	94, 433
MspA1I	CMGCKG	2 cut(s)	116, 591
MspI	CCGG	3 cut(s)	82, 269, 302
MspR9I	CCNGG	4 cut(s)	82, 105, 110, 269
MvaI	CCWGG	2 cut(s)	105, 110
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	125, 518
NciI	CCSGG	2 cut(s)	82, 269
NdeII	GATC	3 cut(s)	152, 256, 471
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	390
PdmI	GAANNNNTTC	2 cut(s)	94, 433
PfeI	GAWTC	2 cut(s)	212, 290
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	103, 108
PspEI	GGTNACC	1 cut(s)	390
PspGI	CCWGG	2 cut(s)	103, 108
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	2 cut(s)	157, 489
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	116, 591
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	3 cut(s)	152, 256, 471
Sau96I	GGNCC	2 cut(s)	157, 489
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	4 cut(s)	82, 105, 110, 269
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	67, 118, 162, 172, 185, 370, 494, 550, 593
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	117, 538
SinI	GGWCC	2 cut(s)	157, 489
Sse9I	AATT	2 cut(s)	92, 219
SsiI	CCGC	5 cut(s)	144, 173, 193, 408, 487
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	4 cut(s)	80, 103, 108, 267
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	13, 278, 572
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	92, 219
TfiI	GAWTC	2 cut(s)	212, 290
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	2 cut(s)	113, 116
Tsp45I	GTSAC	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	363
VpaK11BI	GGWCC	2 cut(s)	157, 489
XapI	RAATTY	2 cut(s)	92, 219
XmnI	GAANNNNTTC	2 cut(s)	94, 433
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.