Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007458

Physical Location & Seq

Genomic Coordinates Forward (+)

28527421 .. 28531756

Gene Structure 4336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGTGCCACTGCAAATAGAACTCCGAAATCTAGTAGGCAGACTTTGTTTTTCCAAGATTTAGCTTCACCTATCTCGGCCCGGAGAGGAAAAATCTCAACTCCAGGCCAGGCAGCTGCAGTATCTGCTCTGTGGCGCGAGAGTTGTAGTGATCGGTCGGATCTTCCCCCTCCTCCTCTTTACACTTTGGAAGACCGCTCAGACTTTTCCCCTGAATCTGGAATTCAAGATTATCCGATATCCCCAGAAATCAAATCAGATCCCAGAACTCCGTTCCAAAGTTCTGGATATGATTTCTCGACTCCTGTCAAAAACAAATCAGAGGCCAGCACTTCTTATGCTCTCTCAAGTGGACAGCATGGCCAACAGGGTTCGGCAACTATGAATTGGTGGTCACCCTCAAAGAGTGGTGGCGAGCAAGATGACAAGGGAAGGAGTTCACCAGTGGAGGGTGTTGTTCAGCCTGGTGCTTTGATCACTCTTCCACCTCCAAGGGAAGTGGCAAGGCCAGAAATGCAAAGGAGTACCATGCCTGCAGCAAATCCCCAAGAGGAAGAATGGGTTACTGTTTATGGATTTTCTGTAGCTGATACAAATTTAGTTTTACGGGAGTTGGAGAAATGTGGTGTGATTTTGAAACATGTTCCTGGCCCAAGAGATGCCAACTGGATGCACATTCTATATCAGAGTTCCTCTGATGCTCAGAAGGCTCTCAGTAAGAATGGGATGCAAATTAATGGAGCATTAATCATAGGTGTGAAGCCACTGGATCCAATGCAACGCCATACCTTAAATGAAAGGCTCATCAACAATCAGGGTTTCATGACTTTGCCGCCTCCATCATCCATGAGACATGCAGAACTAGATGCTTCGAGAGCCCCTCCTCGCTCTTCCTATCTTCAAAATGGTAATACCAGTGCGCGGCAATCTGGAGGCACAATTGCTTCCCCAACAAAGTCATTGGTTTCCAAGGTCATGGATTTGATGTTCGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

332

Amino Acids

36.06

Weight (kDa)

8.46

Isoelectric Point (pI)

61.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	182 - 266	5.1e-29	Nup53/35/40-type RNA recognition motif
Nup35_RRM_2	PF14605	186 - 238	4.2e-07	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16310
fragaria_vesca	FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170 FvH4_6g32170
malus_domestica	MD09G1205800.v1.1 MD17G1186700.v1.1
prunus_persica	Prupe.3G061200_v2.0.a1
pyrus_communis	pycom09g12250 pycom17g19560
rosa_chinensis	RchiOBHm_Chr2g0140061
rosa_laevigata	RLG00000019845
rosa_multiflora	Rmu_co8305803.1_g000001 Rmu_sc0003365.1_g000007
rosa_roxburghii	Rroxscaffold_2G00105090
rosa_rugosa	Rorug02G0360900
rosa_samantha	Rh2AG411500 Rh2BG421800 Rh2CG397600 Rh2DG431200
rosa_wichuraiana	Rw2G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	2 cut(s)	138, 922
AciI	CCGC	3 cut(s)	196, 833, 922
AclWI	GGATC	4 cut(s)	168, 254, 764, 777
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	222, 595
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	3 cut(s)	218, 449, 921
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	3 cut(s)	227, 637, 902
AjnI	CCWGG	4 cut(s)	103, 108, 463, 646
AloI	GAACNNNNNNTCC	1 cut(s)	971
AluBI	AGCT	3 cut(s)	65, 116, 587
AluI	AGCT	3 cut(s)	65, 116, 587
Alw26I	GTCTC	1 cut(s)	844
AlwI	GGATC	4 cut(s)	168, 254, 764, 777
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	6 cut(s)	78, 106, 324, 361, 506, 649
ApeKI	GCWGC	3 cut(s)	113, 116, 536
ApoI	RAATTY	2 cut(s)	222, 595
AseI	ATTAAT	2 cut(s)	735, 746
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	2 cut(s)	138, 922
AspS9I	GGNCC	2 cut(s)	79, 650
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	3 cut(s)	60, 387, 432
BalI	TGGCCA	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	103, 125, 548
BccI	CCATC	1 cut(s)	847
BciT130I	CCWGG	4 cut(s)	105, 110, 465, 648
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	844
BfaI	CTAG	2 cut(s)	33, 863
BfmI	CTRYAG	3 cut(s)	117, 534, 582
BisI	GCNGC	5 cut(s)	114, 117, 537, 833, 923
BlsI	GCNGC	5 cut(s)	115, 118, 538, 834, 924
Bme1390I	CCNGG	5 cut(s)	82, 105, 110, 465, 648
BmgT120I	GGNCC	2 cut(s)	79, 650
BmiI	GGNNCC	1 cut(s)	771
BmrFI	CCNGG	5 cut(s)	82, 105, 110, 465, 648
BmsI	GCATC	5 cut(s)	649, 660, 688, 717, 856
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	2 cut(s)	87, 951
BpuEI	CTTGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	491, 969
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 449, 921
Bse1I	ACTGG	4 cut(s)	443, 671, 771, 915
BseBI	CCWGG	4 cut(s)	105, 110, 465, 648
BseDI	CCNNGG	2 cut(s)	491, 969
BseGI	GGATG	3 cut(s)	675, 732, 842
BseLI	CCNNNNNNNGG	3 cut(s)	218, 449, 921
BseMII	CTCAG	3 cut(s)	213, 716, 727
BseNI	ACTGG	4 cut(s)	443, 671, 771, 915
BseRI	GAGGAG	3 cut(s)	162, 165, 873
BseXI	GCAGC	3 cut(s)	103, 125, 548
Bsh1236I	CGCG	2 cut(s)	138, 922
Bsh1285I	CGRYCG	1 cut(s)	158
BshFI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
BsiEI	CGRYCG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	218, 449, 921
BsmAI	GTCTC	1 cut(s)	844
BsnI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp143I	GATC	5 cut(s)	151, 160, 259, 474, 769
BspACI	CCGC	3 cut(s)	196, 833, 922
BspANI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
BspCNI	CTCAG	3 cut(s)	212, 715, 726
BspFNI	CGCG	2 cut(s)	138, 922
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	771
BspMAI	CTGCAG	2 cut(s)	121, 538
BspPI	GGATC	4 cut(s)	168, 254, 764, 777
BspQI	GCTCTTC	1 cut(s)	895
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	4 cut(s)	443, 671, 771, 915
BssECI	CCNNGG	2 cut(s)	491, 969
BssMI	GATC	5 cut(s)	151, 160, 259, 474, 769
BssT1I	CCWWGG	2 cut(s)	491, 969
Bst2UI	CCWGG	4 cut(s)	105, 110, 465, 648
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	2 cut(s)	486, 895
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	328, 416, 534
BstDEI	CTNAG	3 cut(s)	199, 702, 713
BstEII	GGTNACC	1 cut(s)	393
BstF5I	GGATG	3 cut(s)	675, 732, 842
BstFNI	CGCG	2 cut(s)	138, 922
BstHHI	GCGC	2 cut(s)	138, 922
BstKTI	GATC	5 cut(s)	154, 163, 262, 477, 772
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	5 cut(s)	151, 160, 259, 474, 769
BstMCI	CGRYCG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 514, 707, 875
BstNI	CCWGG	4 cut(s)	105, 110, 465, 648
BstNSI	RCATGY	2 cut(s)	644, 857
BstPAI	GACNNNNGTC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	393
BstSCI	CCNGG	5 cut(s)	80, 103, 108, 463, 646
BstSFI	CTRYAG	3 cut(s)	117, 534, 582
BstUI	CGCG	2 cut(s)	138, 922
BstV1I	GCAGC	3 cut(s)	103, 125, 548
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	3 cut(s)	160, 259, 769
BstXI	CCANNNNNNTGG	2 cut(s)	284, 976
BstYI	RGATCY	3 cut(s)	160, 259, 769
BsuRI	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
BtsCI	GGATG	3 cut(s)	675, 732, 842
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	4 cut(s)	9, 450, 764, 922
Cac8I	GCNNGC	3 cut(s)	328, 416, 534
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	2 cut(s)	138, 922
Cfr13I	GGNCC	2 cut(s)	79, 650
Csp6I	GTAC	1 cut(s)	525
CspCI	CAANNNNNGTGG	2 cut(s)	480, 515
CviAII	CATG	7 cut(s)	359, 529, 641, 823, 847, 854, 976
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	3 cut(s)	199, 702, 713
DpnI	GATC	5 cut(s)	153, 162, 261, 476, 771
DpnII	GATC	5 cut(s)	151, 160, 259, 474, 769
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	486, 895
EarI	CTCTTC	2 cut(s)	486, 895
Eco130I	CCWWGG	2 cut(s)	491, 969
Eco24I	GRGCYC	1 cut(s)	880
Eco32I	GATATC	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	4 cut(s)	103, 108, 463, 646
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	2 cut(s)	491, 969
EcoT38I	GRGCYC	1 cut(s)	880
ErhI	CCWWGG	2 cut(s)	491, 969
FaeI	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
FatI	CATG	7 cut(s)	358, 528, 640, 822, 846, 853, 975
FbaI	TGATCA	1 cut(s)	474
Fnu4HI	GCNGC	5 cut(s)	114, 117, 537, 833, 923
FokI	GGATG	3 cut(s)	682, 739, 829
FriOI	GRGCYC	1 cut(s)	880
Fsp4HI	GCNGC	5 cut(s)	114, 117, 537, 833, 923
FspBI	CTAG	2 cut(s)	33, 863
GlaI	GCGC	2 cut(s)	137, 921
GluI	GCNGC	5 cut(s)	114, 117, 537, 833, 923
GsuI	CTGGAG	2 cut(s)	87, 951
HaeIII	GGCC	6 cut(s)	80, 108, 326, 363, 508, 651
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	2 cut(s)	138, 922
Hin1II	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
Hin6I	GCGC	2 cut(s)	136, 920
HinP1I	GCGC	2 cut(s)	136, 920
HinfI	GANTC	2 cut(s)	215, 301
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	3 cut(s)	60, 387, 432
Hpy166II	GTNNAC	2 cut(s)	353, 440
Hpy188III	TCNNGA	7 cut(s)	219, 227, 285, 298, 823, 873, 930
Hpy8I	GTNNAC	2 cut(s)	353, 440
HpyAV	CCTTC	2 cut(s)	426, 700
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4V	TGCA	8 cut(s)	14, 119, 517, 536, 673, 730, 778, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 514, 707, 875
HpyF3I	CTNAG	3 cut(s)	199, 702, 713
Hsp92II	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
HspAI	GCGC	2 cut(s)	136, 920
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	151, 160, 259, 474, 769
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	1 cut(s)	740
Lsp1109I	GCAGC	3 cut(s)	103, 125, 548
LweI	GCATC	5 cut(s)	649, 660, 688, 717, 856
MaeI	CTAG	2 cut(s)	33, 863
MaeIII	GTNAC	2 cut(s)	393, 562
MalI	GATC	5 cut(s)	153, 162, 261, 476, 771
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	5 cut(s)	151, 160, 259, 474, 769
MboII	GAAGA	6 cut(s)	155, 203, 473, 566, 882, 890
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	3 cut(s)	160, 259, 769
MhlI	GDGCHC	1 cut(s)	880
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	5 cut(s)	222, 385, 595, 732, 939
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	138, 594
Mox20I	TGGCCA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	3 cut(s)	735, 746, 791
MslI	CAYNNNNRTG	1 cut(s)	755
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	5 cut(s)	82, 105, 110, 465, 648
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	4 cut(s)	105, 110, 465, 648
MvnI	CGCG	2 cut(s)	138, 922
MwoI	GCNNNNNNNGC	4 cut(s)	125, 514, 707, 875
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	5 cut(s)	151, 160, 259, 474, 769
NlaIII	CATG	7 cut(s)	362, 532, 644, 826, 850, 857, 979
NlaIV	GGNNCC	1 cut(s)	771
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	393
NspI	RCATGY	2 cut(s)	644, 857
PagI	TCATGA	1 cut(s)	822
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	895
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	5 cut(s)	115, 118, 538, 834, 924
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PscI	ACATGT	1 cut(s)	640
PshAI	GACNNNNGTC	1 cut(s)	305
PshBI	ATTAAT	2 cut(s)	735, 746
Psp6I	CCWGG	4 cut(s)	103, 108, 463, 646
PspEI	GGTNACC	1 cut(s)	393
PspGI	CCWGG	4 cut(s)	103, 108, 463, 646
PspN4I	GGNNCC	1 cut(s)	771
PspPI	GGNCC	2 cut(s)	79, 650
PstI	CTGCAG	2 cut(s)	121, 538
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	3 cut(s)	160, 259, 769
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	755
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	3 cut(s)	735, 746, 791
SatI	GCNGC	5 cut(s)	114, 117, 537, 833, 923
Sau3AI	GATC	5 cut(s)	151, 160, 259, 474, 769
Sau96I	GGNCC	2 cut(s)	79, 650
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	5 cut(s)	82, 105, 110, 465, 648
SduI	GDGCHC	1 cut(s)	880
SetI	ASST	8 cut(s)	67, 73, 118, 490, 589, 757, 791, 975
SfaNI	GCATC	5 cut(s)	649, 660, 688, 717, 856
SfcI	CTRYAG	3 cut(s)	117, 534, 582
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	5 cut(s)	222, 385, 595, 732, 939
SsiI	CCGC	3 cut(s)	196, 833, 922
SspMI	CTAG	2 cut(s)	33, 863
StyD4I	CCNGG	5 cut(s)	80, 103, 108, 463, 646
StyI	CCWWGG	2 cut(s)	491, 969
TaaI	ACNGT	1 cut(s)	568
TaqI	TCGA	2 cut(s)	299, 872
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	5 cut(s)	222, 385, 595, 732, 939
TauI	GCSGC	2 cut(s)	835, 925
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	735, 746, 791
Tru9I	TTAA	3 cut(s)	735, 746, 791
TscAI	CASTG	4 cut(s)	16, 450, 771, 922
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	3 cut(s)	113, 116, 536
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	3 cut(s)	398, 810, 811
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	16, 450, 771, 922
VspI	ATTAAT	2 cut(s)	735, 746
XapI	RAATTY	2 cut(s)	222, 595
XceI	RCATGY	2 cut(s)	644, 857
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	2 cut(s)	33, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.