Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Reverse (-)

5684317 .. 5686544

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G16690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCAGACTTGAGTTTTTATGTCGGAGTCATAGGGAATGTTATATCGGTGCTTGTCTTCCTCTCCCCTGTGGAGACGTTTTGGAGGATAGTGCAGCGGAGATCGACGGAGGAATACGAGTGTTTTCCGTACATTTGCACGTTAATGAGCTCGTCGTTATGGACATATTACGGAATAGTGACACCTGGTGAATACTTGGTTTCTACTGTCAATGGCTTTGGTGCTCTTGCTGAATCCATCTACGTTCTCATTTTCCTCTTCTTTGTCCCCAAATCCAGATTCTTGAAAACAGTTGTTGTGGTTCTAGCTTTGAACGTGTGTTTCCCAGTTATCGCGATTGCGGGAACAAGAACTCTGTTTGGAGATGCAAACTCGCGTTCTAGTTCAATGGGTTTCATATGTGCTACTCTCAACATTATCATGTATGGTTCTCCTCTTTCAGCTATTAAAACGGTTGTGACGACGAGAAGTGTGCAGTTTATGCCATTTTGGTTGTCATTTTTCCTCTTTCTGAACGGCGCGATTTGGGGTGTCTACGCTTTACTCCTACACGATATGTTTCTACTAGTGCCAAATGGAATGGGATTCTTTCTTGGGATAATGCAACTCCTAATTTATGCCTATTACAGAAATGCCGAACCAATTGTAGAAGATGAAGAAGGCCTCATACCAAATCAACCTCTCCTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 MtN3_slv

Protein Analysis

230

Amino Acids

25.74

Weight (kDa)

5.11

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	6 - 92	8.8e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	534
AccII	CGCG	3 cut(s)	335, 376, 521
AciI	CCGC	2 cut(s)	97, 341
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	286, 313, 387
AhlI	ACTAGT	1 cut(s)	565
AjnI	CCWGG	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	3 cut(s)	150, 308, 443
AluI	AGCT	3 cut(s)	150, 308, 443
Alw21I	GWGCWC	2 cut(s)	152, 226
Alw26I	GTCTC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	661
ApeKI	GCWGC	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	651, 683
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	152, 226
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	532
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	1 cut(s)	565
BfaI	CTAG	3 cut(s)	305, 381, 566
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	423, 674
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	2 cut(s)	113, 494
Bsh1236I	CGCG	3 cut(s)	335, 376, 521
BshFI	GGCC	1 cut(s)	663
BsiHKAI	GWGCWC	2 cut(s)	152, 226
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	152, 226
Bsp143I	GATC	1 cut(s)	101
Bsp68I	TCGCGA	1 cut(s)	335
BspACI	CCGC	2 cut(s)	97, 341
BspANI	GGCC	1 cut(s)	663
BspFNI	CGCG	3 cut(s)	335, 376, 521
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	208, 292, 454
Bst6I	CTCTTC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstFNI	CGCG	3 cut(s)	335, 376, 521
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	3 cut(s)	335, 376, 521
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	663
BtuMI	TCGCGA	1 cut(s)	335
CfoI	GCGC	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	421
CviJI	RGCY	5 cut(s)	150, 216, 308, 443, 663
CviKI_1	RGCY	5 cut(s)	150, 216, 308, 443, 663
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DraIII	CACNNNGTG	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	424
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	420
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	398
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	3 cut(s)	305, 381, 566
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	663
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	424
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	27, 233, 279, 585
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	2 cut(s)	26, 513
Hpy188III	TCNNGA	3 cut(s)	276, 283, 334
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	3 cut(s)	109, 157, 466
HpyAV	CCTTC	1 cut(s)	653
HpyCH4III	ACNGT	3 cut(s)	208, 292, 454
HpyCH4IV	ACGT	4 cut(s)	77, 140, 243, 315
HpyCH4V	TGCA	5 cut(s)	94, 138, 368, 475, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpySE526I	ACGT	4 cut(s)	77, 140, 243, 315
Hsp92II	CATG	1 cut(s)	424
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	101
LpnPI	CCDG	5 cut(s)	81, 171, 198, 289, 339
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	355
MabI	ACCWGGT	1 cut(s)	184
MaeI	CTAG	3 cut(s)	305, 381, 566
MaeII	ACGT	4 cut(s)	77, 140, 243, 315
MaeIII	GTNAC	2 cut(s)	178, 457
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	4 cut(s)	49, 250, 662, 668
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	152, 226
MluCI	AATT	2 cut(s)	612, 642
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	8 cut(s)	71, 78, 103, 266, 444, 515, 674, 690
MseI	TTAA	3 cut(s)	143, 447, 691
MslI	CAYNNNNRTG	2 cut(s)	143, 419
MspA1I	CMGCKG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	3 cut(s)	335, 376, 521
MwoI	GCNNNNNNNGC	1 cut(s)	481
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	424
NmuCI	GTSAC	2 cut(s)	178, 457
NruI	TCGCGA	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	233, 279, 585
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
RruI	TCGCGA	1 cut(s)	335
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	2 cut(s)	143, 419
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	143, 447, 691
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	152, 226
SetI	ASST	9 cut(s)	80, 143, 152, 187, 246, 310, 318, 445, 682
SexAI	ACCWGGT	1 cut(s)	184
SfaNI	GCATC	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	143, 419
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SpeI	ACTAGT	1 cut(s)	565
Sse9I	AATT	2 cut(s)	612, 642
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	2 cut(s)	97, 341
SspMI	CTAG	3 cut(s)	305, 381, 566
SstI	GAGCTC	1 cut(s)	152
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	208, 292, 454
TaiI	ACGT	4 cut(s)	80, 143, 246, 318
TaqI	TCGA	1 cut(s)	104
TasI	AATT	2 cut(s)	612, 642
TfiI	GAWTC	3 cut(s)	233, 279, 585
Tru1I	TTAA	3 cut(s)	143, 447, 691
Tru9I	TTAA	3 cut(s)	143, 447, 691
TseFI	GTSAC	2 cut(s)	178, 457
TseI	GCWGC	1 cut(s)	94
Tsp45I	GTSAC	2 cut(s)	178, 457
TspDTI	ATGAA	2 cut(s)	385, 669
TspGWI	ACGGA	3 cut(s)	117, 122, 186
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	3 cut(s)	305, 381, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.