Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Forward (+)

13378189 .. 13384879

Gene Structure 6691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1166800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTTGGAATCAAGAAACTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTAAACCCAGCTCCTCCTAACGCCTGTTACAAAGAGAAGAGGAACCAATTAAGGGGTCCGTCGAACTCCATAAACATGGAAGGCCTGAGTTTCTTTGTTGGAGTCATAGGCAACATCATCTCAGTGTTAATGTTCCTTGCTCCTGTTCCGACGTTTTGGAGAATCGTAAAACACCGATCGACGGAGGACTTTGAGAGCCTGCCTTATGTTTGCACACTGCTCAACTCCTCCCTGTGGACTTACTATGGAATCATTAAGTCCGGAGAATTACTTGTGGCTACTATCAATGGTTTTGGAGCTACTGTTGAGATTATCTACCTTTGTTTGTTTCTTAAATATGCCCCGGCAAAAATGAGGGTAAAAACTGTCATCTTGATTGGAACCTTGGATGTGGGTTTTCTAGCAGTAGCCATTTTAGCTACATGGTTGGCATTGGTGGGAGATACACGTATTGATGCAATAGGATTCATATGTGCAGGCTTGAATATCATCATGTACGCATCGCCTCTAGTTGTCATGAAAACAGTGGTAACAACCAAGAGTGTGGAGTACATGCCATTCTTCCTCTCATTTTTCTTTTTCATCAACGGAGGGGTGTGGACATTTTATGCTTGGCTCTTACAAGATGTTTTCCTTGGGGTACCTAACGGGATAGGGTTTCTTCTGGGAACGACGCAGCTAGTGTTATATGCGATATACAGAAATGCAAAACCATCCAATCAAATTTCAGATGGCGAACAGTTGGAAGAAGGAAGGGAACATGAACCCCTTCTCTCATCCTCTGATGCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

282

Amino Acids

31.08

Weight (kDa)

6.73

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	49 - 134	3e-27	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	170 - 254	6.4e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	691
AccB1I	GGYRCC	1 cut(s)	691
AccIII	TCCGGA	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	774
AfaI	GTAC	3 cut(s)	548, 602, 693
AfiI	CCNNNNNNNGG	3 cut(s)	103, 232, 285
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	535
AluBI	AGCT	4 cut(s)	62, 350, 470, 730
AluI	AGCT	4 cut(s)	62, 350, 470, 730
Aor13HI	TCCGGA	1 cut(s)	311
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	727
ApoI	RAATTY	1 cut(s)	774
Asp700I	GAANNNNTTC	1 cut(s)	819
Asp718I	GGTACC	1 cut(s)	691
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	691
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	2 cut(s)	772, 776
BcnI	CCSGG	1 cut(s)	395
BfaI	CTAG	3 cut(s)	452, 560, 731
BisI	GCNGC	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	729
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	4 cut(s)	95, 108, 433, 693
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	3 cut(s)	496, 560, 826
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	393, 435, 685
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 232, 285
BseAI	TCCGGA	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	393, 435, 685
BseGI	GGATG	3 cut(s)	445, 764, 827
BseLI	CCNNNNNNNGG	3 cut(s)	103, 232, 285
BseMII	CTCAG	2 cut(s)	128, 186
BseRI	GAGGAG	2 cut(s)	54, 268
BseXI	GCAGC	1 cut(s)	739
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	546
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	312, 395
BslI	CCNNNNNNNGG	3 cut(s)	103, 232, 285
BsnI	GGCC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	129, 185
BspEI	TCCGGA	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	4 cut(s)	95, 108, 433, 693
BspT107I	GGYRCC	1 cut(s)	691
BssECI	CCNNGG	3 cut(s)	393, 435, 685
BssMI	GATC	1 cut(s)	227
BssT1I	CCWWGG	2 cut(s)	435, 685
Bst4CI	ACNGT	4 cut(s)	355, 418, 577, 792
Bst6I	CTCTTC	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	251, 529
BstDEI	CTNAG	3 cut(s)	137, 172, 843
BstF5I	GGATG	3 cut(s)	445, 764, 827
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	739
BstXI	CCANNNNNNTGG	2 cut(s)	127, 595
BsuRI	GGCC	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	445, 764, 827
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	3 cut(s)	180, 266, 582
Cac8I	GCNNGC	2 cut(s)	251, 529
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	3 cut(s)	547, 601, 692
CviAII	CATG	6 cut(s)	127, 474, 544, 568, 604, 812
CviQI	GTAC	3 cut(s)	547, 601, 692
DdeI	CTNAG	3 cut(s)	137, 172, 843
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	435, 685
Eco147I	AGGCCT	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	435, 685
ErhI	CCWWGG	2 cut(s)	435, 685
FaeI	CATG	6 cut(s)	130, 477, 547, 571, 607, 815
FatI	CATG	6 cut(s)	126, 473, 543, 567, 603, 811
FauNDI	CATATG	1 cut(s)	521
Fnu4HI	GCNGC	1 cut(s)	728
FokI	GGATG	3 cut(s)	452, 751, 814
Fsp4HI	GCNGC	1 cut(s)	728
FspBI	CTAG	3 cut(s)	452, 560, 731
GluI	GCNGC	1 cut(s)	728
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	312, 395
HgaI	GACGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	130, 477, 547, 571, 607, 815
HinfI	GANTC	5 cut(s)	8, 153, 213, 300, 516
HpaII	CCGG	2 cut(s)	312, 395
Hpy166II	GTNNAC	2 cut(s)	288, 651
Hpy188I	TCNGA	3 cut(s)	201, 781, 835
Hpy188III	TCNNGA	4 cut(s)	12, 312, 424, 568
Hpy8I	GTNNAC	2 cut(s)	288, 651
Hpy99I	CGWCG	4 cut(s)	115, 205, 235, 727
HpyAV	CCTTC	4 cut(s)	125, 794, 798, 830
HpyCH4III	ACNGT	4 cut(s)	355, 418, 577, 792
HpyCH4IV	ACGT	2 cut(s)	203, 499
HpyCH4V	TGCA	4 cut(s)	264, 509, 527, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	3 cut(s)	137, 172, 843
HpySE526I	ACGT	2 cut(s)	203, 499
Hsp92II	CATG	6 cut(s)	130, 477, 547, 571, 607, 815
Kpn2I	TCCGGA	1 cut(s)	311
KpnI	GGTACC	1 cut(s)	695
Kzo9I	GATC	1 cut(s)	227
LmnI	GCTCC	3 cut(s)	67, 196, 347
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	3 cut(s)	496, 560, 826
MaeI	CTAG	3 cut(s)	452, 560, 731
MaeII	ACGT	2 cut(s)	203, 499
MaeIII	GTNAC	2 cut(s)	77, 580
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	4 cut(s)	100, 604, 704, 809
MluCI	AATT	3 cut(s)	98, 317, 774
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	3 cut(s)	130, 224, 774
MnlI	CCTC	9 cut(s)	75, 84, 229, 289, 399, 567, 626, 635, 841
MroI	TCCGGA	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	4 cut(s)	101, 179, 306, 384
MslI	CAYNNNNRTG	2 cut(s)	125, 173
MspI	CCGG	2 cut(s)	312, 395
MspR9I	CCNGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	6 cut(s)	130, 477, 547, 571, 607, 815
NlaIV	GGNNCC	4 cut(s)	95, 108, 433, 693
NspI	RCATGY	1 cut(s)	607
PagI	TCATGA	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	4 cut(s)	8, 213, 300, 516
PkrI	GCNGC	1 cut(s)	729
Ple19I	CGATCG	1 cut(s)	230
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	4 cut(s)	95, 108, 433, 693
PspPI	GGNCC	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	230
RsaI	GTAC	3 cut(s)	548, 602, 693
RsaNI	GTAC	3 cut(s)	547, 601, 692
RseI	CAYNNNNRTG	2 cut(s)	125, 173
SaqAI	TTAA	4 cut(s)	101, 179, 306, 384
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	9 cut(s)	64, 206, 352, 372, 437, 472, 502, 697, 732
SfaNI	GCATC	3 cut(s)	496, 560, 826
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	2 cut(s)	125, 173
Sse9I	AATT	3 cut(s)	98, 317, 774
SseBI	AGGCCT	1 cut(s)	135
SspMI	CTAG	3 cut(s)	452, 560, 731
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	435, 685
TaaI	ACNGT	4 cut(s)	355, 418, 577, 792
TaiI	ACGT	2 cut(s)	206, 502
TaqI	TCGA	2 cut(s)	113, 230
TasI	AATT	3 cut(s)	98, 317, 774
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	4 cut(s)	8, 213, 300, 516
Tru1I	TTAA	4 cut(s)	101, 179, 306, 384
Tru9I	TTAA	4 cut(s)	101, 179, 306, 384
TscAI	CASTG	3 cut(s)	180, 273, 582
TseI	GCWGC	1 cut(s)	727
TspDTI	ATGAA	4 cut(s)	508, 584, 622, 828
TspGWI	ACGGA	3 cut(s)	99, 248, 654
TspRI	CASTG	3 cut(s)	180, 273, 582
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	774
XceI	RCATGY	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	3 cut(s)	452, 560, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.