Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Reverse (-)

22341089 .. 22343565

Gene Structure 2477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAGCTTTGAGTTTCTATGTCGGAGTTATTGGCAACCTCATCTCAGTGCTAATGTTTCTTGCTCCTGTCTATACATTTGCGAGAATCGTAAAGAACCGTTCTACAGAAGAGTTCACAAGTCTTCCCTACGTCTGCACATTCCTCAACTCCTTCCTGTGGACTTACTACGGAATCATAAAGCCCGGAGCTTATCTTGTATCGACCGTAAACGGCTTCGGAGTTCTTGCCGAGATCGTCTACATCTCTCTGTTTCTCACATACGCGACAGCAAACAAGAGGGCGAATACTGTGATCTGGATTAGTATACTGGATGTGGGTTTTCCGGCGGCGGCCATTTTAGTAACTTGGCTGGCGTTGAAGGGAGATACACGTATCAGTGCAATAGGGTTCTTGGGTGCTGGCCTCAACATCATCATGTACGCCTCACCTCTAGCTGCAATGAAAACAGTGGTGACAACGAAGAGTGTGGAGTATATGCCATTCTGGCTATCATTCTTCTTTTTCCTCAACGGAGGGGTCTGGCTTTTTTATGCTTGGCTCGAACAAGATTATTTTCTTGGGGTACCAAATGGGATGGGGTTTTTACTCGGAGCAGTGCAGCTCGTGCTATATTGGATTTACAAAAAACCAGCCAAGAAGGAAGACAAAAGCTTATCAAGTGCGCTACTGGTGGAAGAAGGAAGTGAACATGAACCTATTACCTCATCAGCTTGTACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

242

Amino Acids

26.65

Weight (kDa)

7.67

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	6 - 91	4.8e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	128 - 211	9.5e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AccI	GTMKAC	2 cut(s)	240, 307
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	329, 332
AcoI	YGGCCR	1 cut(s)	333
AfaI	GTAC	3 cut(s)	422, 567, 718
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	361
AluBI	AGCT	6 cut(s)	8, 191, 437, 604, 654, 713
AluI	AGCT	6 cut(s)	8, 191, 437, 604, 654, 713
AoxI	GGCC	2 cut(s)	333, 403
ApeKI	GCWGC	3 cut(s)	5, 437, 601
Asp718I	GGTACC	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	667
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	420, 466
BanI	GGYRCC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	116, 651
BbvI	GCAGC	3 cut(s)	17, 424, 613
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	487
BisI	GCNGC	5 cut(s)	6, 330, 333, 438, 602
BlsI	GCNGC	5 cut(s)	7, 331, 334, 439, 603
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	116, 651
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	315, 675
Bse3DI	GCAATG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	319, 582
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	315, 675
BseXI	GCAGC	3 cut(s)	17, 424, 613
BsgI	GTGCAG	2 cut(s)	121, 620
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	335, 405
BshNI	GGYRCC	1 cut(s)	565
BsiEI	CGRYCG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	186, 326
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	2 cut(s)	335, 405
Bsp143I	GATC	2 cut(s)	234, 294
BspACI	CCGC	2 cut(s)	329, 332
BspANI	GGCC	2 cut(s)	335, 405
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	315, 675
BssMI	GATC	2 cut(s)	234, 294
BssNAI	GTATAC	1 cut(s)	308
BssSI	CACGAG	1 cut(s)	605
Bst1107I	GTATAC	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	101, 208, 292, 451
Bst6I	CTCTTC	2 cut(s)	105, 458
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	354, 403
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	319, 582
BstFNI	CGCG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	2 cut(s)	237, 297
BstMBI	GATC	2 cut(s)	234, 294
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 607, 719
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	17, 424, 613
BstV2I	GAAGAC	2 cut(s)	116, 651
BstZ17I	GTATAC	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	335, 405
BtsCI	GGATG	2 cut(s)	319, 582
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	4 cut(s)	54, 385, 456, 603
Cac8I	GCNNGC	2 cut(s)	354, 403
CfoI	GCGC	1 cut(s)	667
Csp6I	GTAC	3 cut(s)	421, 566, 717
CviAII	CATG	2 cut(s)	418, 692
CviQI	GTAC	3 cut(s)	421, 566, 717
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	2 cut(s)	236, 296
DpnII	GATC	2 cut(s)	234, 294
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	105, 458
EarI	CTCTTC	2 cut(s)	105, 458
FaeI	CATG	2 cut(s)	421, 695
FatI	CATG	2 cut(s)	417, 691
FblI	GTMKAC	2 cut(s)	240, 307
Fnu4HI	GCNGC	5 cut(s)	6, 330, 333, 438, 602
FokI	GGATG	2 cut(s)	326, 589
Fsp4HI	GCNGC	5 cut(s)	6, 330, 333, 438, 602
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	5 cut(s)	6, 330, 333, 438, 602
HaeIII	GGCC	2 cut(s)	335, 405
HapII	CCGG	2 cut(s)	186, 326
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	2 cut(s)	421, 695
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	2 cut(s)	87, 174
HpaII	CCGG	2 cut(s)	186, 326
HphI	GGTGA	2 cut(s)	420, 466
Hpy166II	GTNNAC	6 cut(s)	117, 162, 211, 241, 308, 689
Hpy188I	TCNGA	3 cut(s)	26, 221, 593
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	6 cut(s)	117, 162, 211, 241, 308, 689
HpyAV	CCTTC	4 cut(s)	163, 355, 634, 674
HpyCH4III	ACNGT	4 cut(s)	101, 208, 292, 451
HpyCH4IV	ACGT	2 cut(s)	132, 373
HpyCH4V	TGCA	4 cut(s)	138, 383, 440, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 607, 719
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	2 cut(s)	132, 373
Hsp92II	CATG	2 cut(s)	421, 695
HspAI	GCGC	1 cut(s)	665
KpnI	GGTACC	1 cut(s)	569
Kzo9I	GATC	2 cut(s)	234, 294
LmnI	GCTCC	3 cut(s)	70, 188, 593
Lsp1109I	GCAGC	3 cut(s)	17, 424, 613
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	132, 373
MaeIII	GTNAC	2 cut(s)	343, 454
MalI	GATC	2 cut(s)	236, 296
MboI	GATC	2 cut(s)	234, 294
MboII	GAAGA	6 cut(s)	116, 122, 475, 490, 656, 689
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	9 cut(s)	50, 155, 273, 416, 436, 441, 509, 518, 715
MseI	TTAA	1 cut(s)	724
MslI	CAYNNNNRTG	2 cut(s)	47, 416
MspI	CCGG	2 cut(s)	186, 326
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	487, 607, 719
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	234, 294
NlaIII	CATG	2 cut(s)	421, 695
NlaIV	GGNNCC	1 cut(s)	567
NmeAIII	GCCGAG	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	87, 174
PkrI	GCNGC	5 cut(s)	7, 331, 334, 439, 603
Ppu21I	YACGTR	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	567
RsaI	GTAC	3 cut(s)	422, 567, 718
RsaNI	GTAC	3 cut(s)	421, 566, 717
RseI	CAYNNNNRTG	2 cut(s)	47, 416
SaqAI	TTAA	1 cut(s)	724
SatI	GCNGC	5 cut(s)	6, 330, 333, 438, 602
Sau3AI	GATC	2 cut(s)	234, 294
ScrFI	CCNGG	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	2 cut(s)	47, 416
SsiI	CCGC	2 cut(s)	329, 332
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	101, 208, 292, 451
TaiI	ACGT	2 cut(s)	135, 376
TaqI	TCGA	2 cut(s)	203, 543
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	2 cut(s)	332, 335
TfiI	GAWTC	2 cut(s)	87, 174
Tru1I	TTAA	1 cut(s)	724
Tru9I	TTAA	1 cut(s)	724
TscAI	CASTG	4 cut(s)	54, 385, 456, 603
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	3 cut(s)	5, 437, 601
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	2 cut(s)	458, 708
TspGWI	ACGGA	2 cut(s)	186, 528
TspRI	CASTG	4 cut(s)	54, 385, 456, 603
XmiI	GTMKAC	2 cut(s)	240, 307
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.