Rorug04G0171500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011109
Physical Location & Seq
Reverse (-)
30186195 .. 30189345
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0171500.1

Sequence Viewer

Length: 657 bp
ATGGCAAGCCAGGCAGCTAGGTCTTTTAACGGTAACATGAAGAAAGCTGTTGCCGGCCTCAGACGTATTAATCTTGATGGTCTGAGATGGAGAGTATTCGATGCGAAAGGCCAGGTTCTTGGAAGGCTAGCGTCTCAAATATCTACTGTGATTCAAGGAAAGGATAAACCAACATACACTCCAAATCGAGATGAAGGAGATATGTGCATTGTGCTGAACGCGAAGGATATTTGCGTCACGGGTAGTAAACTGACTGATAAAGTTTATCATTGGCATACTGGGTATGTGGGTCATCTGAAGGAGAGGACGTTAAAAGATCAGATGGTCAAAGATCCTACGGAAGTCATTCGCAAAGCTGTGTTACGCATGCTCCCAAAGAACAAATTGCGCGATGATAGAGATAGAAAGCTGAGGATATTTCCTGGTAGTGAACACCCCTTTGGTGATCGGCCCCTTGAAACATATGTGATGCCCCCTAGGAGAGTAAGGGAAATGCGACCCCGTACAAGACGTGCCATTGTCCGAGCTCAGAAAAAGGCTGAACAGCAACAACAAGATGCTAATGATCCACGAAGGGGCAAAAAGAAGGATACACGGGAATTGGTTGCTTCTAATTACTCGAGCTTATTTGGGCTTATGAAAGTTGTTGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

25.1

Weight (kDa)

10.32

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 29 - 146 2.1e-45 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011109)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca FvH4_4g18490
malus_domestica MD13G1166800.v1.1
prunus_persica Prupe.1G133300_v2.0.a1
pyrus_communis pycom13g14240
rosa_chinensis RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata RLG00000007592
rosa_multiflora Rmu_sc0000830.1_g000007
rosa_roxburghii Rroxscaffold_5G00365100
rosa_rugosa Rorug04G0171500 Rorug04G0183100
rosa_samantha Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana Rw4G020940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 221, 390
AclWI GGATC 2 cut(s) 326, 560
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 2 cut(s) 155, 458
AjiI CACGTC 1 cut(s) 512
AjnI CCWGG 3 cut(s) 9, 111, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 6 cut(s) 17, 47, 356, 409, 527, 624
AluI AGCT 6 cut(s) 17, 47, 356, 409, 527, 624
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 326, 560
Ama87I CYCGRG 1 cut(s) 619
AoxI GGCC 3 cut(s) 55, 109, 449
ApeKI GCWGC 1 cut(s) 14
AseI ATTAAT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 345
AspA2I CCTAGG 1 cut(s) 476
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 619
AvrII CCTAGG 1 cut(s) 476
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 26
BccI CCATC 3 cut(s) 71, 81, 316
BciT130I CCWGG 3 cut(s) 11, 113, 423
BciVI GTATCC 1 cut(s) 583
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 3 cut(s) 18, 128, 477
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 1 cut(s) 15
BlnI CCTAGG 1 cut(s) 476
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 3 cut(s) 11, 113, 423
BmeT110I CYCGRG 1 cut(s) 619
BmgBI CACGTC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 452
BmrFI CCNGG 3 cut(s) 11, 113, 423
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 91, 459, 547
BmtI GCTAGC 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 476
BsaXI ACNNNNNCTCC 6 cut(s) 163, 193, 293, 323, 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 3 cut(s) 11, 113, 423
BseDI CCNNGG 1 cut(s) 476
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 4 cut(s) 73, 74, 401, 542
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 221, 390
BshFI GGCC 3 cut(s) 57, 111, 451
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 619
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 3 cut(s) 57, 111, 451
BsoBI CYCGRG 1 cut(s) 619
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 4 cut(s) 316, 331, 445, 565
BspANI GGCC 3 cut(s) 57, 111, 451
BspCNI CTCAG 4 cut(s) 72, 75, 402, 541
BspFNI CGCG 2 cut(s) 221, 390
BspLI GGNNCC 1 cut(s) 452
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 326, 560
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 4 cut(s) 316, 331, 445, 565
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 3 cut(s) 11, 113, 423
Bst4CI ACNGT 2 cut(s) 32, 148
BstC8I GCNNGC 4 cut(s) 7, 55, 129, 368
BstDEI CTNAG 4 cut(s) 59, 83, 410, 528
BstFNI CGCG 2 cut(s) 221, 390
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 4 cut(s) 319, 334, 448, 568
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 4 cut(s) 316, 331, 445, 565
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 11, 113, 423
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 3 cut(s) 9, 111, 421
BstUI CGCG 2 cut(s) 221, 390
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 1 cut(s) 331
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 3 cut(s) 57, 111, 451
BtgZI GCGATG 1 cut(s) 405
BtrI CACGTC 1 cut(s) 512
Cac8I GCNNGC 4 cut(s) 7, 55, 129, 368
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 2 cut(s) 120, 223
Csp6I GTAC 1 cut(s) 504
CviAII CATG 2 cut(s) 37, 367
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 4 cut(s) 59, 83, 410, 528
DpnI GATC 4 cut(s) 318, 333, 447, 567
DpnII GATC 4 cut(s) 316, 331, 445, 565
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 9, 111, 421
EcoT14I CCWWGG 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 476
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 40, 370
FaiI YATR 9 cut(s) 38, 175, 203, 276, 285, 368, 463, 465, 638
FatI CATG 2 cut(s) 36, 366
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 3 cut(s) 18, 128, 477
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 3 cut(s) 57, 111, 451
HapII CCGG 1 cut(s) 54
HgaI GACGC 2 cut(s) 120, 223
HhaI GCGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 40, 370
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 1 cut(s) 151
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 248, 431
Hpy188I TCNGA 6 cut(s) 62, 84, 297, 321, 524, 531
Hpy188III TCNNGA 2 cut(s) 74, 188
Hpy8I GTNNAC 2 cut(s) 248, 431
HpyAV CCTTC 6 cut(s) 117, 188, 217, 292, 567, 580
HpyCH4III ACNGT 2 cut(s) 32, 148
HpyCH4IV ACGT 3 cut(s) 64, 308, 511
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 59, 83, 410, 528
HpySE526I ACGT 3 cut(s) 64, 308, 511
Hsp92II CATG 2 cut(s) 40, 370
HspAI GCGC 1 cut(s) 388
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 316, 331, 445, 565
LmnI GCTCC 1 cut(s) 375
LpnPI CCDG 7 cut(s) 23, 67, 98, 125, 264, 408, 435
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 91, 459, 547
MaeI CTAG 3 cut(s) 18, 128, 477
MaeII ACGT 3 cut(s) 64, 308, 511
MaeIII GTNAC 3 cut(s) 32, 235, 360
MalI GATC 4 cut(s) 318, 333, 447, 567
MboI GATC 4 cut(s) 316, 331, 445, 565
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 3 cut(s) 383, 599, 613
MnlI CCTC 4 cut(s) 68, 297, 405, 643
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 3 cut(s) 27, 69, 311
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 3 cut(s) 11, 113, 423
MvaI CCWGG 3 cut(s) 11, 113, 423
MvnI CGCG 2 cut(s) 221, 390
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 55
NdeI CATATG 1 cut(s) 463
NdeII GATC 4 cut(s) 316, 331, 445, 565
NgoMIV GCCGGC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 40, 370
NlaIV GGNNCC 1 cut(s) 452
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 370
PaeI GCATGC 1 cut(s) 370
PaeR7I CTCGAG 1 cut(s) 619
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 9, 111, 421
PspGI CCWGG 3 cut(s) 9, 111, 421
PspN4I GGNNCC 1 cut(s) 452
PspPI GGNCC 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 619
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 3 cut(s) 27, 69, 311
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 316, 331, 445, 565
Sau96I GGNCC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 11, 113, 423
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 3 cut(s) 91, 459, 547
Sfr274I CTCGAG 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 619
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
SphI GCATGC 1 cut(s) 370
Sse9I AATT 3 cut(s) 383, 599, 613
SspMI CTAG 3 cut(s) 18, 128, 477
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 3 cut(s) 9, 111, 421
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 2 cut(s) 32, 148
TaiI ACGT 3 cut(s) 67, 311, 514
TaqI TCGA 3 cut(s) 99, 187, 620
TasI AATT 3 cut(s) 383, 599, 613
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 3 cut(s) 27, 69, 311
Tru9I TTAA 3 cut(s) 27, 69, 311
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 53, 207, 653
TspGWI ACGGA 1 cut(s) 353
VspI ATTAAT 1 cut(s) 69
XceI RCATGY 1 cut(s) 370
XhoI CTCGAG 1 cut(s) 619
XmaJI CCTAGG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 3 cut(s) 18, 128, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.