Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Reverse (-)

9030486 .. 9033648

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCAGAGGCAAGTTTCTATATCGGAGTCATAGGAAATGTAATCTCCGTACTAGTTTTCCTCTCACCAGTGGAGACGTTTTGGAAAATAGTGAAGCGGAGATCAACGGAGGAGTACAAAAGCTTGCCGTACATTTGCACGTTGTTAGGATCATCGCTATGGACATATTACGGCATCGTCACTCCCGGAGAATATCTTGTCTCCACCGTTAATGGCTTTGGTGCTCTTGTTGAAACCATCTACGTTTCACTTTTTCTCTTTTATGCCCCTCGACATCTCAAGCTGAAAACAGTGGATGTGGAAGCGATGTTGAACGTGTTTTTTCCAATCGCGGCGATTGTGGCAACGAGAAGTGCGTTTGAAGATGAGAAGATGCGTTCTCAATCAATAGGTTTCATATCTGCTGGTCTAAACATTATAATGTATGGTTCTCCACTTTCAGCAATGAAAACAGTAGTGACAACAAAGAGCGTGAAATACATGCCGTTTTGGTTGTCGTTTTTCCTCTTCTTAAACGGCGCGATTTGGGCTGTCTATGCTTTACTCCAACACGACGTTTTCTTACTCGTGCCAAATGGAGTGGGGTTTGTGTTTGGGACAATGCAACTCATACTTTATGGAATTTACAGAAATGCCAAACCGGTTGGTTTAAGCAACGGTTTAAGTGAGATTGCTCAAGATGAAGAGGAAGGCCTCACATCACGTGTTGAACCTCTCCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_16 MtN3_slv

Protein Analysis

241

Amino Acids

26.81

Weight (kDa)

6.14

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	6 - 92	4e-28	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	129 - 213	1.1e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AccII	CGCG	2 cut(s)	332, 521
AciI	CCGC	2 cut(s)	97, 332
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	621
AcvI	CACGTG	1 cut(s)	704
AfaI	GTAC	3 cut(s)	51, 116, 131
AflIII	ACRYGT	2 cut(s)	315, 703
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	4 cut(s)	233, 313, 362, 710
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	2 cut(s)	123, 283
AluI	AGCT	2 cut(s)	123, 283
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	2 cut(s)	68, 205
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	691
ApoI	RAATTY	1 cut(s)	621
AsiGI	ACCGGT	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	57
BauI	CACGAG	1 cut(s)	566
BbrPI	CACGTG	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	226
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	4 cut(s)	112, 187, 469, 532
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	68, 205
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	183, 363
BpuEI	CTTGAG	2 cut(s)	263, 660
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	704
BsaWI	WCCGGW	1 cut(s)	640
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	125, 707
Bsh1236I	CGCG	2 cut(s)	332, 521
BshFI	GGCC	1 cut(s)	693
BshTI	ACCGGT	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	186, 641
BslFI	GGGAC	1 cut(s)	610
BsmAI	GTCTC	2 cut(s)	68, 205
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	693
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	101, 149
BspACI	CCGC	2 cut(s)	97, 332
BspANI	GGCC	1 cut(s)	693
BspFNI	CGCG	2 cut(s)	332, 521
BspPI	GGATC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	640
BssMI	GATC	2 cut(s)	101, 149
BssSI	CACGAG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	566
Bst4CI	ACNGT	4 cut(s)	208, 292, 454, 659
Bst6I	CTCTTC	2 cut(s)	512, 678
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	2 cut(s)	332, 521
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	2 cut(s)	104, 152
BstMAI	GTCTC	2 cut(s)	68, 205
BstMBI	GATC	2 cut(s)	101, 149
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 527, 536
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	332, 521
BsuRI	GGCC	1 cut(s)	693
BtgZI	GCGATG	2 cut(s)	138, 320
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	75, 297
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	521
Cfr10I	RCCGGY	1 cut(s)	640
Csp6I	GTAC	3 cut(s)	50, 115, 130
CspAI	ACCGGT	1 cut(s)	640
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	5 cut(s)	123, 216, 283, 530, 693
CviKI_1	RGCY	5 cut(s)	123, 216, 283, 530, 693
CviQI	GTAC	3 cut(s)	50, 115, 130
DpnI	GATC	2 cut(s)	103, 151
DpnII	GATC	2 cut(s)	101, 149
Eam1104I	CTCTTC	2 cut(s)	512, 678
EarI	CTCTTC	2 cut(s)	512, 678
Eco147I	AGGCCT	1 cut(s)	693
Eco72I	CACGTG	1 cut(s)	704
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	484
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	693
HapII	CCGG	2 cut(s)	186, 641
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	2 cut(s)	186, 641
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	1 cut(s)	677
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	4 cut(s)	208, 292, 454, 659
HpyCH4IV	ACGT	6 cut(s)	77, 140, 243, 315, 555, 703
HpyCH4V	TGCA	2 cut(s)	138, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 527, 536
HpySE526I	ACGT	6 cut(s)	77, 140, 243, 315, 555, 703
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	101, 149
LpnPI	CCDG	4 cut(s)	81, 199, 390, 654
LweI	GCATC	2 cut(s)	183, 363
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	6 cut(s)	77, 140, 243, 315, 555, 703
MaeIII	GTNAC	2 cut(s)	178, 457
MalI	GATC	2 cut(s)	103, 151
MboI	GATC	2 cut(s)	101, 149
MboII	GAAGA	4 cut(s)	374, 382, 499, 695
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	7 cut(s)	71, 103, 279, 515, 679, 704, 723
MseI	TTAA	5 cut(s)	210, 512, 650, 662, 724
MslI	CAYNNNNRTG	2 cut(s)	157, 419
MspI	CCGG	2 cut(s)	186, 641
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	332, 521
MwoI	GCNNNNNNNGC	3 cut(s)	341, 527, 536
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	2 cut(s)	101, 149
NlaIII	CATG	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	178, 457
NspI	RCATGY	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	35
PmaCI	CACGTG	1 cut(s)	704
PmlI	CACGTG	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	704
PsiI	TTATAA	1 cut(s)	419
PspCI	CACGTG	1 cut(s)	704
RsaI	GTAC	3 cut(s)	51, 116, 131
RsaNI	GTAC	3 cut(s)	50, 115, 130
RseI	CAYNNNNRTG	2 cut(s)	157, 419
SaqAI	TTAA	5 cut(s)	210, 512, 650, 662, 724
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	101, 149
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	183, 363
SmiMI	CAYNNNNRTG	2 cut(s)	157, 419
SmlI	CTYRAG	2 cut(s)	278, 675
SmoI	CTYRAG	2 cut(s)	278, 675
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	1 cut(s)	621
SseBI	AGGCCT	1 cut(s)	693
SsiI	CCGC	2 cut(s)	97, 332
SspMI	CTAG	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	208, 292, 454, 659
TaiI	ACGT	6 cut(s)	80, 143, 246, 318, 558, 706
TaqI	TCGA	1 cut(s)	271
TasI	AATT	1 cut(s)	621
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	5 cut(s)	210, 512, 650, 662, 724
Tru9I	TTAA	5 cut(s)	210, 512, 650, 662, 724
TscAI	CASTG	2 cut(s)	75, 297
TseFI	GTSAC	2 cut(s)	178, 457
Tsp45I	GTSAC	2 cut(s)	178, 457
TspDTI	ATGAA	3 cut(s)	385, 461, 696
TspGWI	ACGGA	2 cut(s)	37, 122
TspRI	CASTG	2 cut(s)	75, 297
XapI	RAATTY	1 cut(s)	621
XceI	RCATGY	1 cut(s)	484
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.