Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Reverse (-)

55111422 .. 55119888

Gene Structure 8467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAAACTTTAAGTTTCTATATCGGAGTTATTGGCAACCTCATTTCAGTGCTAATGTTTCTTGCTCCTGTGTATACATTTTCGAGAATCATAAAGAACCGTTCGACAGAAGAGTTCAGTAGTCTTCCCTACGTCTGCACATTCCTCAACTGCTTCCTGTGGACTTACTACGGAATCATAAAGCCCGGAGCTTATCTTGTATCCACCATCAATGGCTTCGGAATTCTTGTCGAGATCTTCTATCTCTCTTTGTTTCTAACATATGCCACAGCAAACAAGAGGGTGAACACGGCGATCTGGATTGGTATCTTGGATGTGGGTTTTCCGGCAGCGGCCATTTTAGTGACTTGGCTGGCGTTGAAGGGAGATGTACGTATTAATGCAATAGGGTTCTTGAGTGCTGGCCTCAATATCATCATGTACGCCTCACCTCTAGCTGCAATGAAGAAAAATAACTTTGGCCGGCAAACTGCAATTGTAGTTAGAGCACCATCAAGGAATATGCCCCAATCCCACGCATTCAAGCTCTTCCATTCTCCACAACATCACAAATTCACAATTTTATCATCTAAGTCCAAGTATAATTTAAACATGGGCGGAACTCTTTCTCGCCCATTCAGCGAGCCCATTCTACTATTTATACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

215

Amino Acids

23.99

Weight (kDa)

9.84

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	6 - 91	8.7e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	2 cut(s)	332, 597
AcoI	YGGCCR	2 cut(s)	333, 460
AcsI	RAATTY	2 cut(s)	222, 551
AfaI	GTAC	2 cut(s)	372, 422
AgsI	TTSAA	2 cut(s)	361, 523
AluBI	AGCT	3 cut(s)	191, 437, 526
AluI	AGCT	3 cut(s)	191, 437, 526
Alw21I	GWGCWC	1 cut(s)	490
AoxI	GGCC	3 cut(s)	333, 403, 460
ApeKI	GCWGC	2 cut(s)	329, 437
ApoI	RAATTY	2 cut(s)	222, 551
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	604
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	295, 420
BanII	GRGCYC	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	2 cut(s)	341, 424
BccI	CCATC	2 cut(s)	215, 499
BceAI	ACGGC	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	3 cut(s)	330, 333, 438
BlsI	GCNGC	3 cut(s)	331, 334, 439
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	305
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	341, 424
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	335, 405, 462
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	186, 326, 463
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	3 cut(s)	335, 405, 462
Bsp1286I	GDGCHC	2 cut(s)	490, 627
Bsp143I	GATC	2 cut(s)	234, 294
BspACI	CCGC	2 cut(s)	332, 597
BspANI	GGCC	3 cut(s)	335, 405, 462
BspQI	GCTCTTC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	462
BssAI	RCCGGY	1 cut(s)	462
BssMI	GATC	2 cut(s)	234, 294
BssNAI	GTATAC	1 cut(s)	75
Bst1107I	GTATAC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	2 cut(s)	105, 533
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	4 cut(s)	354, 403, 464, 623
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	2 cut(s)	237, 297
BstMBI	GATC	2 cut(s)	234, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	184
BstSNI	TACGTA	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	341, 424
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BstZ17I	GTATAC	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	335, 405, 462
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	4 cut(s)	354, 403, 464, 623
Cfr10I	RCCGGY	1 cut(s)	462
Csp6I	GTAC	2 cut(s)	371, 421
CviAII	CATG	2 cut(s)	418, 592
CviQI	GTAC	2 cut(s)	371, 421
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	2 cut(s)	236, 296
DpnII	GATC	2 cut(s)	234, 294
DraI	TTTAAA	1 cut(s)	588
EaeI	YGGCCR	2 cut(s)	333, 460
Eam1104I	CTCTTC	2 cut(s)	105, 533
EarI	CTCTTC	2 cut(s)	105, 533
EciI	GGCGGA	1 cut(s)	612
Eco105I	TACGTA	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	627
FaeI	CATG	2 cut(s)	421, 595
FatI	CATG	2 cut(s)	417, 591
FauNDI	CATATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	330, 333, 438
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	3 cut(s)	330, 333, 438
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	330, 333, 438
HaeIII	GGCC	3 cut(s)	335, 405, 462
HapII	CCGG	3 cut(s)	186, 326, 463
Hin1II	CATG	2 cut(s)	421, 595
HinfI	GANTC	2 cut(s)	87, 174
HpaII	CCGG	3 cut(s)	186, 326, 463
HphI	GGTGA	2 cut(s)	295, 420
Hpy166II	GTNNAC	3 cut(s)	75, 162, 286
Hpy188I	TCNGA	2 cut(s)	26, 221
Hpy188III	TCNNGA	4 cut(s)	84, 232, 298, 394
Hpy8I	GTNNAC	3 cut(s)	75, 162, 286
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	132, 373
HpyCH4V	TGCA	4 cut(s)	138, 383, 440, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	2 cut(s)	132, 373
Hsp92II	CATG	2 cut(s)	421, 595
KroI	GCCGGC	1 cut(s)	462
KroNI	GCCGGC	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	234, 294
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	70, 188
LpnPI	CCDG	8 cut(s)	81, 170, 199, 283, 338, 339, 387, 476
Lsp1109I	GCAGC	2 cut(s)	341, 424
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	132, 373
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	236, 296
MboI	GATC	2 cut(s)	234, 294
MboII	GAAGA	5 cut(s)	116, 122, 229, 457, 520
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	490, 627
MluCI	AATT	5 cut(s)	222, 474, 551, 558, 583
MnlI	CCTC	6 cut(s)	50, 155, 273, 416, 436, 441
MroNI	GCCGGC	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	604
MseI	TTAA	3 cut(s)	11, 378, 587
MslI	CAYNNNNRTG	2 cut(s)	47, 341
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	3 cut(s)	186, 326, 463
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	518
MwoI	GCNNNNNNNGC	1 cut(s)	618
NaeI	GCCGGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	234, 294
NgoMIV	GCCGGC	1 cut(s)	462
NlaIII	CATG	2 cut(s)	421, 595
NmuCI	GTSAC	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	533
PctI	GAATGC	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	87, 174
PkrI	GCNGC	3 cut(s)	331, 334, 439
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	2 cut(s)	372, 422
RsaNI	GTAC	2 cut(s)	371, 421
RseI	CAYNNNNRTG	2 cut(s)	47, 341
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	11, 378, 587
SatI	GCNGC	3 cut(s)	330, 333, 438
Sau3AI	GATC	2 cut(s)	234, 294
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	490, 627
SetI	ASST	7 cut(s)	42, 135, 193, 376, 433, 439, 528
SmiMI	CAYNNNNRTG	2 cut(s)	47, 341
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
SnaBI	TACGTA	1 cut(s)	374
Sse9I	AATT	5 cut(s)	222, 474, 551, 558, 583
SsiI	CCGC	2 cut(s)	332, 597
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	135, 376
TaqI	TCGA	3 cut(s)	83, 104, 231
TasI	AATT	5 cut(s)	222, 474, 551, 558, 583
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	87, 174
Tru1I	TTAA	3 cut(s)	11, 378, 587
Tru9I	TTAA	3 cut(s)	11, 378, 587
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	329, 437
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	54
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	222, 551
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	604
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.