Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Reverse (-)

41489753 .. 41491524

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAACTTTAAGTTTCTATATCGGAGTTATTGGCAACCTCATTTCAGTGCTAATGTTTCTTGCTCCTGTGTATACATTTTCGAGAATCATAAAGAACCGTTCGACAGAAGAGTTCAGTAGTCTTCCCTACGTCTGCACATTCCTCAACTGCTTCCTGTGGACTTACTACGGAATCATAAAGCCCGGAGCTTATCTTGTATCCACCATCAATGGCTTCGGAATTCTTGTCGAGATCTTCTATCTCTCTTTGTTTCTAACATATGCCACAGCAAACAAGAGGGTGAACACGGCGATCTGGATTGGTATCTTGGATGTGGGTTTTCCGGCAGCGGCCATTTTAGTGACTTGGCTGGCGTTGAAGGGAGATGTACGTATTAATGCAATAGGGTTCTTGAGTGCTGGCCTCAATATCATCATGTACGCCTCACCTCTAGCTGCAATGAAAACAGTGGTGACAACTAAGAGTGTGGAGTACATGCCATTTTGGCTATCATTCTTCTTTTTCCTCAACGGAGGGGTCTGGCTTTTTTATTCTTGGCTTGAACAAGATTATTTTCTTGGGGTACCAAATGGGATGGGGTTTTTACTCGGAACAGTGCAGCTCGTGCTATATTGCATTTACACAAAACCAGCCAAGAAGGAAGACAAAAGCTTATCAAGTGCACTACTGGTGGAAGAAGGAAGAGAATATGAACCTCTTAACTCATCAGATACTACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

241

Amino Acids

27.03

Weight (kDa)

5.52

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	6 - 91	1.1e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	128 - 211	1.9e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	222
AfaI	GTAC	4 cut(s)	372, 422, 476, 567
AgsI	TTSAA	2 cut(s)	361, 545
AluBI	AGCT	4 cut(s)	191, 437, 604, 654
AluI	AGCT	4 cut(s)	191, 437, 604, 654
Alw21I	GWGCWC	1 cut(s)	667
Alw44I	GTGCAC	1 cut(s)	663
AoxI	GGCC	2 cut(s)	333, 403
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	329, 437, 601
ApoI	RAATTY	1 cut(s)	222
AseI	ATTAAT	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	565
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	295, 420, 466
BaeGI	GKGCMC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	605
BbsI	GAAGAC	2 cut(s)	116, 651
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	341, 424, 613
BccI	CCATC	2 cut(s)	215, 571
BceAI	ACGGC	1 cut(s)	306
BciVI	GTATCC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	4 cut(s)	330, 333, 438, 602
BlsI	GCNGC	4 cut(s)	331, 334, 439, 603
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	116, 651
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	675
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	305
BseGI	GGATG	2 cut(s)	319, 582
BseJI	GATNNNNATC	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	675
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	341, 424, 613
BsgI	GTGCAG	2 cut(s)	121, 620
BshFI	GGCC	2 cut(s)	335, 405
BshNI	GGYRCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	186, 326
BsnI	GGCC	2 cut(s)	335, 405
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	2 cut(s)	234, 294
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	335, 405
BspLI	GGNNCC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	675
BssMI	GATC	2 cut(s)	234, 294
BssNAI	GTATAC	1 cut(s)	75
BssSI	CACGAG	1 cut(s)	605
Bst1107I	GTATAC	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	101, 451, 598
Bst6I	CTCTTC	2 cut(s)	105, 679
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	354, 403
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	319, 582
BstKTI	GATC	2 cut(s)	237, 297
BstMBI	GATC	2 cut(s)	234, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	487, 607
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	667
BstSNI	TACGTA	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	341, 424, 613
BstV2I	GAAGAC	2 cut(s)	116, 651
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BstZ17I	GTATAC	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	335, 405
BtsCI	GGATG	2 cut(s)	319, 582
BtsIMutI	CAGTG	3 cut(s)	54, 456, 603
Cac8I	GCNNGC	2 cut(s)	354, 403
Csp6I	GTAC	4 cut(s)	371, 421, 475, 566
CviAII	CATG	2 cut(s)	418, 478
CviQI	GTAC	4 cut(s)	371, 421, 475, 566
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	2 cut(s)	236, 296
DpnII	GATC	2 cut(s)	234, 294
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	105, 679
EarI	CTCTTC	2 cut(s)	105, 679
Eco105I	TACGTA	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	421, 481
FatI	CATG	2 cut(s)	417, 477
FauNDI	CATATG	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	4 cut(s)	330, 333, 438, 602
FokI	GGATG	2 cut(s)	326, 589
Fsp4HI	GCNGC	4 cut(s)	330, 333, 438, 602
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	4 cut(s)	330, 333, 438, 602
HaeIII	GGCC	2 cut(s)	335, 405
HapII	CCGG	2 cut(s)	186, 326
Hin1II	CATG	2 cut(s)	421, 481
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	2 cut(s)	87, 174
HpaII	CCGG	2 cut(s)	186, 326
HphI	GGTGA	3 cut(s)	295, 420, 466
Hpy166II	GTNNAC	4 cut(s)	75, 162, 286, 665
Hpy188I	TCNGA	4 cut(s)	26, 221, 593, 712
Hpy188III	TCNNGA	4 cut(s)	84, 232, 298, 394
Hpy8I	GTNNAC	4 cut(s)	75, 162, 286, 665
HpyAV	CCTTC	3 cut(s)	355, 634, 674
HpyCH4III	ACNGT	3 cut(s)	101, 451, 598
HpyCH4IV	ACGT	2 cut(s)	132, 373
HpyCH4V	TGCA	6 cut(s)	138, 383, 440, 601, 618, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	487, 607
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	2 cut(s)	132, 373
Hsp92II	CATG	2 cut(s)	421, 481
KpnI	GGTACC	1 cut(s)	569
Kzo9I	GATC	2 cut(s)	234, 294
LmnI	GCTCC	2 cut(s)	70, 188
Lsp1109I	GCAGC	3 cut(s)	341, 424, 613
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	132, 373
MaeIII	GTNAC	2 cut(s)	343, 454
MalI	GATC	2 cut(s)	236, 296
MboI	GATC	2 cut(s)	234, 294
MboII	GAAGA	7 cut(s)	116, 122, 229, 490, 656, 689, 696
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	9 cut(s)	50, 155, 273, 416, 436, 441, 509, 518, 708
MseI	TTAA	4 cut(s)	11, 378, 702, 724
MslI	CAYNNNNRTG	2 cut(s)	47, 341
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	2 cut(s)	186, 326
MspR9I	CCNGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	487, 607
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	234, 294
NlaIII	CATG	2 cut(s)	421, 481
NlaIV	GGNNCC	1 cut(s)	567
NmuCI	GTSAC	2 cut(s)	343, 454
NspI	RCATGY	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	87, 174
PkrI	GCNGC	4 cut(s)	331, 334, 439, 603
Ppu21I	YACGTR	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	4 cut(s)	372, 422, 476, 567
RsaNI	GTAC	4 cut(s)	371, 421, 475, 566
RseI	CAYNNNNRTG	2 cut(s)	47, 341
SaqAI	TTAA	4 cut(s)	11, 378, 702, 724
SatI	GCNGC	4 cut(s)	330, 333, 438, 602
Sau3AI	GATC	2 cut(s)	234, 294
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	667
SetI	ASST	9 cut(s)	42, 135, 193, 376, 433, 439, 606, 656, 700
SmiMI	CAYNNNNRTG	2 cut(s)	47, 341
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
SnaBI	TACGTA	1 cut(s)	374
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	101, 451, 598
TaiI	ACGT	2 cut(s)	135, 376
TaqI	TCGA	3 cut(s)	83, 104, 231
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	87, 174
Tru1I	TTAA	4 cut(s)	11, 378, 702, 724
Tru9I	TTAA	4 cut(s)	11, 378, 702, 724
TscAI	CASTG	3 cut(s)	54, 456, 603
TseFI	GTSAC	2 cut(s)	343, 454
TseI	GCWGC	3 cut(s)	329, 437, 601
Tsp45I	GTSAC	2 cut(s)	343, 454
TspDTI	ATGAA	2 cut(s)	458, 708
TspGWI	ACGGA	2 cut(s)	186, 528
TspRI	CASTG	3 cut(s)	54, 456, 603
VneI	GTGCAC	1 cut(s)	663
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.