Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Forward (+)

10539275 .. 10545923

Gene Structure 6649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G133300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAAGGATTAATTATATTTATTGGGGTCATAGGCAACATCATCTCAGTGCTAATGTTCCTTGCTCCTGTCGGAACGTTTTGGAGAATTGTAAAGCACCGATCGACGGAGGACTTCGAGAGTCTGCCTTATGTTTGCACATTCCTCAACTCCTTCTTGTGGACTTATTATGGAATTATAAGGCCCGCCGGAGGATTACTTGTGGCCACTGTCAATGGTTTTGGTGTCGTTGTTGAGATTATCTACCTTATTTTGTTTCTAGTATATGCCCCAGCAAAGATGAGGGCAAAGACGGCCATCTTGATTGGAACCTTGGATGTGGGTTTTCTAGTAGCTGCCATTTTAGCTACCTGGCTGGCATTGCAGGGAGAGACACGTATTGATGCACTAGGGTTCATTTGTGCAGGCTTAAACATCATCATGTACGGCTCGCCGCTAGTTGCCATGAAAACAGTGATAACAACTAAGAGTGTGGAGTACATGCCATTCTTCCTCTCATTTTTCTTTTTCCTCAACGGAGGGGTGTGGACTCTCTATGCTTGGCTCATACGAGATGTTTTCCTTGGGGTACCAAACGGGATTGGGTTTCTTCTTGGAACAACGCAGCTAGTGCTATATGCGATTTACAGAAATGCCAAACCAGCCGATAATATTTCAAGTGGGCTGCTGGAAGAAGGAAGGCAACATGAACCTCTTATCTCACCTTCTTCTGCTACTCCATCACAAAAAAATGGAGAAATATTGGAGACCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

252

Amino Acids

27.58

Weight (kDa)

6.12

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AciI	CCGC	2 cut(s)	186, 434
AclI	AACGTT	1 cut(s)	77
AcoI	YGGCCR	2 cut(s)	204, 294
AfaI	GTAC	3 cut(s)	425, 479, 570
AfiI	CCNNNNNNNGG	3 cut(s)	106, 159, 191
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	3 cut(s)	335, 347, 607
AluI	AGCT	3 cut(s)	335, 347, 607
Alw26I	GTCTC	2 cut(s)	365, 740
AoxI	GGCC	3 cut(s)	182, 204, 294
ApeKI	GCWGC	3 cut(s)	335, 604, 664
AseI	ATTAAT	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	693
BalI	TGGCCA	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	568
BbvI	GCAGC	3 cut(s)	322, 616, 651
BccI	CCATC	2 cut(s)	305, 727
BceAI	ACGGC	2 cut(s)	309, 442
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	365, 740
BfaI	CTAG	5 cut(s)	260, 329, 389, 437, 608
BisI	GCNGC	4 cut(s)	336, 434, 605, 665
BlsI	GCNGC	4 cut(s)	337, 435, 606, 666
Bme1390I	CCNGG	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	2 cut(s)	310, 570
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	2 cut(s)	312, 562
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 159, 191
Bse3DI	GCAATG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	312, 562
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	3 cut(s)	106, 159, 191
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	322, 616, 651
BseYI	CCCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	184, 206, 296
BshNI	GGYRCC	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	106, 159, 191
BsmAI	GTCTC	2 cut(s)	365, 740
BsnI	GGCC	3 cut(s)	184, 206, 296
Bso31I	GGTCTC	1 cut(s)	740
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	2 cut(s)	186, 434
BspANI	GGCC	3 cut(s)	184, 206, 296
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	310, 570
BspT107I	GGYRCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	740
BsrDI	GCAATG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	312, 562
BssMI	GATC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	312, 562
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	211, 454
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	4 cut(s)	186, 357, 406, 431
BstDEI	CTNAG	2 cut(s)	46, 465
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	104
BstMAI	GTCTC	2 cut(s)	365, 740
BstMBI	GATC	1 cut(s)	101
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	5 cut(s)	293, 344, 361, 610, 641
BstNI	CCWGG	1 cut(s)	352
BstNSI	RCATGY	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	322, 616, 651
BsuRI	GGCC	3 cut(s)	184, 206, 296
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	54, 207, 459
Cac8I	GCNNGC	4 cut(s)	186, 357, 406, 431
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	424, 478, 569
CviAII	CATG	4 cut(s)	421, 445, 481, 686
CviQI	GTAC	3 cut(s)	424, 478, 569
DdeI	CTNAG	2 cut(s)	46, 465
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
EaeI	YGGCCR	2 cut(s)	204, 294
Eco130I	CCWWGG	2 cut(s)	312, 562
Eco31I	GGTCTC	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	312, 562
ErhI	CCWWGG	2 cut(s)	312, 562
FaeI	CATG	4 cut(s)	424, 448, 484, 689
FatI	CATG	4 cut(s)	420, 444, 480, 685
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	336, 434, 605, 665
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	336, 434, 605, 665
FspBI	CTAG	5 cut(s)	260, 329, 389, 437, 608
GluI	GCNGC	4 cut(s)	336, 434, 605, 665
GsaI	CCCAGC	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	184, 206, 296
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	4 cut(s)	424, 448, 484, 689
HinfI	GANTC	2 cut(s)	121, 529
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	2 cut(s)	162, 528
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	2 cut(s)	118, 301
Hpy8I	GTNNAC	2 cut(s)	162, 528
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	4 cut(s)	163, 668, 672, 714
HpyCH4III	ACNGT	2 cut(s)	211, 454
HpyCH4IV	ACGT	2 cut(s)	77, 376
HpyCH4V	TGCA	4 cut(s)	138, 364, 386, 404
HpyF10VI	GCNNNNNNNGC	5 cut(s)	293, 344, 361, 610, 641
HpyF3I	CTNAG	2 cut(s)	46, 465
HpySE526I	ACGT	2 cut(s)	77, 376
Hsp92II	CATG	4 cut(s)	424, 448, 484, 689
KpnI	GGTACC	1 cut(s)	572
Kzo9I	GATC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	3 cut(s)	322, 616, 651
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	5 cut(s)	260, 329, 389, 437, 608
MaeII	ACGT	2 cut(s)	77, 376
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	4 cut(s)	481, 581, 683, 699
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	3 cut(s)	12, 87, 174
MluNI	TGGCCA	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	130, 523
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	8 cut(s)	103, 155, 185, 276, 503, 512, 521, 702
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	3 cut(s)	11, 410, 754
MslI	CAYNNNNRTG	2 cut(s)	47, 419
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	5 cut(s)	293, 344, 361, 610, 641
NdeII	GATC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	424, 448, 484, 689
NlaIV	GGNNCC	2 cut(s)	310, 570
NspI	RCATGY	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	337, 435, 606, 666
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	2 cut(s)	129, 523
PpsI	GAGTC	2 cut(s)	129, 523
Ppu21I	YACGTR	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	310, 570
PspPI	GGNCC	1 cut(s)	183
PvuI	CGATCG	1 cut(s)	104
RsaI	GTAC	3 cut(s)	425, 479, 570
RsaNI	GTAC	3 cut(s)	424, 478, 569
RseI	CAYNNNNRTG	2 cut(s)	47, 419
SaqAI	TTAA	3 cut(s)	11, 410, 754
SatI	GCNGC	4 cut(s)	336, 434, 605, 665
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	2 cut(s)	130, 523
ScrFI	CCNGG	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	2 cut(s)	47, 419
Sse9I	AATT	3 cut(s)	12, 87, 174
SsiI	CCGC	2 cut(s)	186, 434
SspI	AATATT	2 cut(s)	652, 741
SspMI	CTAG	5 cut(s)	260, 329, 389, 437, 608
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	2 cut(s)	312, 562
TaaI	ACNGT	2 cut(s)	211, 454
TaiI	ACGT	2 cut(s)	80, 379
TaqI	TCGA	2 cut(s)	104, 117
TasI	AATT	3 cut(s)	12, 87, 174
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	436
Tru1I	TTAA	3 cut(s)	11, 410, 754
Tru9I	TTAA	3 cut(s)	11, 410, 754
TscAI	CASTG	3 cut(s)	54, 214, 459
TseI	GCWGC	3 cut(s)	335, 604, 664
TspDTI	ATGAA	3 cut(s)	385, 461, 702
TspGWI	ACGGA	2 cut(s)	122, 531
TspRI	CASTG	3 cut(s)	54, 214, 459
VspI	ATTAAT	1 cut(s)	11
XceI	RCATGY	1 cut(s)	484
XspI	CTAG	5 cut(s)	260, 329, 389, 437, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.