Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011109

Physical Location & Seq

Genomic Coordinates Forward (+)

47746540 .. 47747947

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAGCTCTTTGCATTGTGTTCATCCAAGTATCCGAAAACTCCGACAAAGGCTGTGACATTGCCATGGTTCTGTGGCCTGGATTTGGGCATCCCTCTTGCCATTCTCCTGATTGCTCGTAGGGTTGTGGACCTTGATGATCGCACAAGCACCTTTGGCAGCGTGGCTGCACTGTTGAATGTTGCATCATTCTACTGGCCCATTGTCGAGTTGAAAACTATGATAGTTAATCCTGTGTTGGACTTGGATAATATATTGCTTTGGAACGGATTCATCTGTTGTTTTAATGGAGGGGCATGGGCTTTGTATGGTTGGTATGTGGAGGACCTCTATATTTTGGTACCAAACTGCTTGGGAATGATACTAGGCTGTTTTGAAGTGCTCACTTTCTGCATTCAGAGGCACAGGCTGCAGCAACCGGCAACATTATTGGCTGAGCCCCTTTTGCCTGGTTGGGAAGCTGTCACTGGAGAGGGACCACCAGACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006950 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009746 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015749 GO:0015755 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0098588 GO:0098805 GO:1901700 GO:1902334

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

163

Amino Acids

18.08

Weight (kDa)

4.81

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	51 - 132	3.2e-08	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16690 AT3G16690 AT3G16690 AT4G15920
fragaria_vesca	FvH4_4g18490
malus_domestica	MD13G1166800.v1.1
prunus_persica	Prupe.1G133300_v2.0.a1
pyrus_communis	pycom13g14240
rosa_chinensis	RchiOBHm_Chr4g0422071 RchiOBHm_Chr4g0423041
rosa_laevigata	RLG00000007592
rosa_multiflora	Rmu_sc0000830.1_g000007
rosa_roxburghii	Rroxscaffold_5G00365100
rosa_rugosa	Rorug04G0171500 Rorug04G0183100
rosa_samantha	Rh4AG243000 Rh4BG247600 Rh4CG257300 Rh4DG242500
rosa_wichuraiana	Rw4G020940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	340
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	178, 214, 377
AjnI	CCWGG	2 cut(s)	78, 448
AluBI	AGCT	2 cut(s)	7, 461
AluI	AGCT	2 cut(s)	7, 461
Alw21I	GWGCWC	1 cut(s)	384
AoxI	GGCC	2 cut(s)	76, 197
ApeKI	GCWGC	4 cut(s)	159, 167, 409, 412
Asp700I	GAANNNNTTC	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	340
AspS9I	GGNCC	4 cut(s)	130, 198, 325, 476
AvaII	GGWCC	3 cut(s)	130, 325, 476
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	4 cut(s)	154, 171, 396, 424
BciT130I	CCWGG	2 cut(s)	80, 450
BciVI	GTATCC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	160, 168, 410, 413
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	4 cut(s)	161, 169, 411, 414
Bme1390I	CCNGG	2 cut(s)	80, 450
Bme18I	GGWCC	3 cut(s)	130, 325, 476
BmgT120I	GGNCC	4 cut(s)	130, 198, 325, 476
BmiI	GGNNCC	2 cut(s)	342, 477
BmrFI	CCNGG	2 cut(s)	80, 450
BmsI	GCATC	2 cut(s)	99, 194
BpmI	CTGGAG	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	200, 472
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	80, 450
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	23, 90
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	200, 472
BseXI	GCAGC	4 cut(s)	154, 171, 396, 424
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	78, 199
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	78, 199
Bsp1286I	GDGCHC	2 cut(s)	384, 441
Bsp143I	GATC	1 cut(s)	139
Bsp1720I	GCTNAGC	1 cut(s)	435
Bsp19I	CCATGG	1 cut(s)	65
BspANI	GGCC	2 cut(s)	78, 199
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	342, 477
BspMAI	CTGCAG	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	200, 472
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	139
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	80, 450
Bst4CI	ACNGT	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstDEI	CTNAG	2 cut(s)	435, 489
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	23, 90
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 409, 445
BstNI	CCWGG	2 cut(s)	80, 450
BstSCI	CCNGG	2 cut(s)	78, 448
BstSFI	CTRYAG	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	154, 171, 396, 424
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	78, 199
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	23, 90
BtsIMutI	CAGTG	2 cut(s)	170, 465
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	4 cut(s)	130, 198, 325, 476
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	2 cut(s)	66, 297
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	435, 489
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	130, 325, 476
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	78, 448
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	69, 300
FaiI	YATR	7 cut(s)	67, 221, 254, 298, 309, 318, 333
FatI	CATG	2 cut(s)	65, 296
Fnu4HI	GCNGC	4 cut(s)	160, 168, 410, 413
FokI	GGATG	2 cut(s)	10, 77
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	4 cut(s)	160, 168, 410, 413
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	4 cut(s)	160, 168, 410, 413
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	78, 199
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	2 cut(s)	69, 300
HinfI	GANTC	2 cut(s)	270, 485
HpaII	CCGG	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	36, 45, 399
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	5 cut(s)	14, 170, 185, 393, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 409, 445
HpyF3I	CTNAG	2 cut(s)	435, 489
Hsp92II	CATG	2 cut(s)	69, 300
KpnI	GGTACC	1 cut(s)	344
Kzo9I	GATC	1 cut(s)	139
Lsp1109I	GCAGC	4 cut(s)	154, 171, 396, 424
LweI	GCATC	2 cut(s)	99, 194
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	55, 463
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	384, 441
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	2 cut(s)	68, 219
MnlI	CCTC	6 cut(s)	105, 284, 316, 338, 393, 466
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	2 cut(s)	228, 285
MslI	CAYNNNNRTG	1 cut(s)	64
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	2 cut(s)	80, 450
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	2 cut(s)	80, 450
MwoI	GCNNNNNNNGC	3 cut(s)	156, 409, 445
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	69, 300
NlaIV	GGNNCC	2 cut(s)	342, 477
NmuCI	GTSAC	2 cut(s)	55, 463
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	161, 169, 411, 414
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	78, 448
PspGI	CCWGG	2 cut(s)	78, 448
PspN4I	GGNNCC	2 cut(s)	342, 477
PspPI	GGNCC	4 cut(s)	130, 198, 325, 476
PspPPI	RGGWCCY	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	414
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	228, 285
SatI	GCNGC	4 cut(s)	160, 168, 410, 413
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	4 cut(s)	130, 198, 325, 476
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	2 cut(s)	80, 450
SduI	GDGCHC	2 cut(s)	384, 441
SetI	ASST	5 cut(s)	9, 135, 155, 330, 463
SfaNI	GCATC	2 cut(s)	99, 194
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	3 cut(s)	130, 325, 476
SmiMI	CAYNNNNRTG	1 cut(s)	64
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	78, 448
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	228, 285
Tru9I	TTAA	2 cut(s)	228, 285
TscAI	CASTG	2 cut(s)	177, 472
TseFI	GTSAC	2 cut(s)	55, 463
TseI	GCWGC	4 cut(s)	159, 167, 409, 412
Tsp45I	GTSAC	2 cut(s)	55, 463
TspDTI	ATGAA	3 cut(s)	12, 17, 262
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	177, 472
VpaK11BI	GGWCC	3 cut(s)	130, 325, 476
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.