Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009608

Physical Location & Seq

Genomic Coordinates Forward (+)

5796930 .. 5799747

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGATGAGAGGTATAATCGGAAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGTTAAGGAGATGCAAGCTAATCCGTCTGATGATTTTATGTCTCTTCCTCTTGAGGAGAATATCTTTGAGTGGCAATTCGCCATCCGAGGTCCTGGTGATACTGAATTCGAGGGCGGGATTTATCATGGGAGAATTCAGTTGCCTGCAGATTATCCATTCAAACCTCCTTCATTCATGTTATTGACCCCTAACGGGCGCTTTGAAACTAACACCAAGATTTGCTTGAGCATTTCAAACTACCACCCTGAGCATTGGCAACCTTCATGGAGTGTTCGGACTGCTTTGGTGGCTCTCATTGCATTTATGCCCACAAGTCCCAATGGAGCACTGGGCTCAGTAGATTATCCAAAGGATGAGAGACGTACACTAGCCATTAAATCACGTGAGACACCACCTAAGTATGGCTCTCCTGAACGGCAAAAAATTATTGATGAGATTCATCAGTACATCCTTAGCAAAGCAACCGTGGTTCCAAAACCTCTTCCTCTGGAATGTAGCCAAGCACCTTCCATCGTATCAGAAGCTCACTCCCAAGTTGAGCCACAGGAAGCGATAACTGTAGTAGAAGAGCGGTCCATCGCTACAACAGACACCATAGTTGATGATCAAATCATAGAAGAGACAGCTGAAGCAGTCAATACAGCAGCTAGTGTGGTTCCCGCTGCAGCACCTTTACCAGCGGTTGAAGTTGTGGTCAAAGCTTCTGTAAGTGGTGAGCAAAGGATGGCCAGAAGAGCGGCTCAGAAGCCAGTCGATGACAGACTCTTCACGTGGGCGGCGGTTGGGCTCACAATCGCTATCATGGTTCTTCTTCTGAAGAAGTTCATAAAATCAAATGGTTACAGTACTGGGTTTATGGATGATCAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

309

Amino Acids

34.32

Weight (kDa)

5.3

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 126	2.4e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17000
fragaria_vesca	FvH4_4g19560 FvH4_4g19560 FvH4_4g19560
malus_domestica	MD13G1155700.v1.1 MD16G1155400.v1.1
prunus_persica	Prupe.1G119000_v2.0.a1 Prupe.1G119000_v2.0.a1
pyrus_communis	pycom13g13270 pycom16g13170
rosa_chinensis	RchiOBHm_Chr4g0424811
rosa_laevigata	RLG00000007420
rosa_multiflora	Rmu_sc0003608.1_g000021 Rmu_sc0007418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367030
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257000 Rh4BG262300 Rh4CG273300 Rh4DG258100
rosa_wichuraiana	Rw4G022170 Rw4G024030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	628, 794
AciI	CCGC	9 cut(s)	5, 35, 171, 628, 717, 737, 794, 833, 836
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	161, 189
AcuI	CTGAAG	2 cut(s)	705, 893
AcvI	CACGTG	2 cut(s)	440, 828
AfaI	GTAC	3 cut(s)	421, 503, 904
AfiI	CCNNNNNNNGG	2 cut(s)	249, 458
AgsI	TTSAA	4 cut(s)	217, 260, 291, 743
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	5 cut(s)	74, 581, 683, 704, 758
AluI	AGCT	5 cut(s)	74, 581, 683, 704, 758
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	4 cut(s)	102, 409, 437, 671
AoxI	GGCC	1 cut(s)	783
ApeKI	GCWGC	3 cut(s)	701, 719, 722
ApoI	RAATTY	2 cut(s)	161, 189
Asp700I	GAANNNNTTC	1 cut(s)	878
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	146, 630
AsuHPI	GGTGA	3 cut(s)	49, 164, 782
AvaII	GGWCC	2 cut(s)	146, 630
BalI	TGGCCA	1 cut(s)	785
BanII	GRGCYC	2 cut(s)	392, 846
BbrPI	CACGTG	2 cut(s)	440, 828
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	706, 713, 734
BccI	CCATC	4 cut(s)	146, 575, 641, 775
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	2 cut(s)	661, 919
BcoDI	GTCTC	4 cut(s)	102, 409, 437, 671
BfaI	CTAG	2 cut(s)	425, 705
BfmI	CTRYAG	3 cut(s)	201, 615, 720
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	5 cut(s)	702, 720, 723, 795, 834
BlsI	GCNGC	5 cut(s)	703, 721, 724, 796, 835
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	2 cut(s)	146, 630
BmgT120I	GGNCC	2 cut(s)	146, 630
BmiI	GGNNCC	2 cut(s)	528, 714
BmrFI	CCNGG	1 cut(s)	150
BmrI	ACTGGG	2 cut(s)	395, 915
BmsI	GCATC	1 cut(s)	57
BmuI	ACTGGG	2 cut(s)	395, 915
Bpu10I	CCTNAGC	2 cut(s)	303, 509
BpuEI	CTTGAG	2 cut(s)	128, 301
BsaAI	YACGTR	2 cut(s)	440, 828
BsaJI	CCNNGG	2 cut(s)	142, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 458
Bse1I	ACTGG	3 cut(s)	390, 806, 910
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	142, 522
BseGI	GGATG	6 cut(s)	13, 138, 415, 504, 786, 922
BseLI	CCNNNNNNNGG	2 cut(s)	249, 458
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	294, 405, 812
BseNI	ACTGG	3 cut(s)	390, 806, 910
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	706, 713, 734
BshFI	GGCC	1 cut(s)	785
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	249, 458
BsmAI	GTCTC	4 cut(s)	102, 409, 437, 671
BsmBI	CGTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	785
Bsp1286I	GDGCHC	3 cut(s)	385, 392, 846
Bsp143I	GATC	2 cut(s)	661, 919
BspACI	CCGC	9 cut(s)	5, 35, 171, 628, 717, 737, 794, 833, 836
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	3 cut(s)	295, 404, 811
BspLI	GGNNCC	2 cut(s)	528, 714
BspMAI	CTGCAG	2 cut(s)	205, 724
BspQI	GCTCTTC	2 cut(s)	618, 784
BsrBI	CCGCTC	2 cut(s)	628, 794
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	3 cut(s)	390, 806, 910
BssECI	CCNNGG	2 cut(s)	142, 522
BssMI	GATC	2 cut(s)	661, 919
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	523, 616, 902
Bst6I	CTCTTC	7 cut(s)	35, 105, 543, 618, 669, 784, 827
BstBAI	YACGTR	2 cut(s)	440, 828
BstC8I	GCNNGC	2 cut(s)	72, 201
BstDEI	CTNAG	5 cut(s)	303, 391, 453, 509, 798
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	6 cut(s)	13, 138, 415, 504, 786, 922
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	664, 922
BstMAI	GTCTC	4 cut(s)	102, 409, 437, 671
BstMBI	GATC	2 cut(s)	661, 919
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 353, 791
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	3 cut(s)	201, 615, 720
BstV1I	GCAGC	3 cut(s)	706, 713, 734
BsuRI	GGCC	1 cut(s)	785
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	619
BtsCI	GGATG	6 cut(s)	13, 138, 415, 504, 786, 922
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	2 cut(s)	72, 201
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	146, 630
Csp6I	GTAC	3 cut(s)	420, 502, 903
CviAII	CATG	4 cut(s)	182, 232, 321, 859
CviQI	GTAC	3 cut(s)	420, 502, 903
DdeI	CTNAG	5 cut(s)	303, 391, 453, 509, 798
DpnI	GATC	2 cut(s)	663, 921
DpnII	GATC	2 cut(s)	661, 919
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	7 cut(s)	35, 105, 543, 618, 669, 784, 827
EarI	CTCTTC	7 cut(s)	35, 105, 543, 618, 669, 784, 827
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	2 cut(s)	392, 846
Eco47I	GGWCC	2 cut(s)	146, 630
Eco57I	CTGAAG	2 cut(s)	705, 893
Eco72I	CACGTG	2 cut(s)	440, 828
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	2 cut(s)	161, 189
EcoRII	CCWGG	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	392, 846
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	4 cut(s)	185, 235, 324, 862
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	4 cut(s)	181, 231, 320, 858
FauI	CCCGC	2 cut(s)	164, 724
FbaI	TGATCA	2 cut(s)	661, 919
Fnu4HI	GCNGC	5 cut(s)	702, 720, 723, 795, 834
FokI	GGATG	5 cut(s)	20, 125, 422, 491, 793
FriOI	GRGCYC	2 cut(s)	392, 846
Fsp4HI	GCNGC	5 cut(s)	702, 720, 723, 795, 834
FspBI	CTAG	2 cut(s)	425, 705
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	5 cut(s)	702, 720, 723, 795, 834
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	185, 235, 324, 862
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	3 cut(s)	28, 493, 819
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	3 cut(s)	49, 164, 782
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	7 cut(s)	24, 85, 143, 333, 577, 801, 873
Hpy188III	TCNNGA	4 cut(s)	107, 467, 545, 927
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	3 cut(s)	234, 327, 573
HpyCH4III	ACNGT	3 cut(s)	523, 616, 902
HpyCH4IV	ACGT	3 cut(s)	418, 439, 827
HpyCH4V	TGCA	5 cut(s)	52, 70, 203, 356, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 353, 791
HpyF3I	CTNAG	5 cut(s)	303, 391, 453, 509, 798
HpySE526I	ACGT	3 cut(s)	418, 439, 827
Hsp92II	CATG	4 cut(s)	185, 235, 324, 862
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	661, 919
Kzo9I	GATC	2 cut(s)	661, 919
LguI	GCTCTTC	2 cut(s)	618, 784
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	706, 713, 734
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	2 cut(s)	425, 705
MaeII	ACGT	3 cut(s)	418, 439, 827
MaeIII	GTNAC	1 cut(s)	896
MalI	GATC	2 cut(s)	663, 921
MbiI	CCGCTC	2 cut(s)	628, 794
MboI	GATC	2 cut(s)	661, 919
MhlI	GDGCHC	3 cut(s)	385, 392, 846
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	4 cut(s)	131, 161, 189, 480
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	1 cut(s)	813
Mox20I	TGGCCA	1 cut(s)	785
MroXI	GAANNNNTTC	1 cut(s)	878
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	2 cut(s)	60, 432
Msp20I	TGGCCA	1 cut(s)	785
MspA1I	CMGCKG	3 cut(s)	683, 719, 737
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	344, 353, 791
NdeII	GATC	2 cut(s)	661, 919
NlaIII	CATG	4 cut(s)	185, 235, 324, 862
NlaIV	GGNNCC	2 cut(s)	528, 714
PciSI	GCTCTTC	2 cut(s)	618, 784
PdmI	GAANNNNTTC	1 cut(s)	878
PfeI	GAWTC	2 cut(s)	28, 493
PkrI	GCNGC	5 cut(s)	703, 721, 724, 796, 835
PleI	GAGTC	1 cut(s)	813
PmaCI	CACGTG	2 cut(s)	440, 828
PmlI	CACGTG	2 cut(s)	440, 828
PpsI	GAGTC	1 cut(s)	813
Ppu21I	YACGTR	2 cut(s)	440, 828
PpuMI	RGGWCCY	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	148
PspCI	CACGTG	2 cut(s)	440, 828
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	528, 714
PspPI	GGNCC	2 cut(s)	146, 630
PspPPI	RGGWCCY	1 cut(s)	146
PstI	CTGCAG	2 cut(s)	205, 724
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	3 cut(s)	421, 503, 904
RsaNI	GTAC	3 cut(s)	420, 502, 903
SapI	GCTCTTC	2 cut(s)	618, 784
SaqAI	TTAA	2 cut(s)	60, 432
SatI	GCNGC	5 cut(s)	702, 720, 723, 795, 834
Sau3AI	GATC	2 cut(s)	661, 919
Sau96I	GGNCC	2 cut(s)	146, 630
ScaI	AGTACT	1 cut(s)	904
SchI	GAGTC	1 cut(s)	813
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	3 cut(s)	385, 392, 846
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	3 cut(s)	201, 615, 720
SinI	GGWCC	2 cut(s)	146, 630
SmlI	CTYRAG	2 cut(s)	107, 280
SmoI	CTYRAG	2 cut(s)	107, 280
Sse9I	AATT	4 cut(s)	131, 161, 189, 480
SsiI	CCGC	9 cut(s)	5, 35, 171, 628, 717, 737, 794, 833, 836
SspMI	CTAG	2 cut(s)	425, 705
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	3 cut(s)	523, 616, 902
TaiI	ACGT	3 cut(s)	421, 442, 830
TaqI	TCGA	2 cut(s)	165, 810
TasI	AATT	4 cut(s)	131, 161, 189, 480
TatI	WGTACW	2 cut(s)	501, 902
TauI	GCSGC	2 cut(s)	797, 836
TfiI	GAWTC	2 cut(s)	28, 493
Tru1I	TTAA	2 cut(s)	60, 432
Tru9I	TTAA	2 cut(s)	60, 432
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	3 cut(s)	701, 719, 722
TspDTI	ATGAA	5 cut(s)	216, 220, 309, 485, 871
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	146, 630
XapI	RAATTY	2 cut(s)	161, 189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	878
XspI	CTAG	2 cut(s)	425, 705
ZrmI	AGTACT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.