pycom13g13270

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
9366754 .. 9368676
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13270.2

Sequence Viewer

Length: 1071 bp
ATGCAGCAGTCGACGTGGCATAGACCCAACAAATATCGTGTAAACACCGCCCGGTTCTCTCTTTCCTCTCCGCTTCGTATTTGTATTCCGTATATAATTTGTTCATTTAATTCAACCGGGAGAGGTGGTGGTGGTGGCGGTGGAGGCAGTGGATCGGATCGGATCGGATCGGATCGGTGCGGATCGGACCGGACGGCGATGGCGGAGGACAAGTACAACCGGAAGAACCCGGCGGTGAAGCGGATTTTGCAGGAGGTTAAGGAGATGCAATCCAAACCCTCCGATGATTTCATGAGCCTCCCCCTCGAGGAGAATATATTTGACTGGCAATTTGCAATCAGAGGCCCTAGTGACACCGAATTCGAAGGTGGAATTTACCATGGGCGGATTCAGTTGCCGGCGGAGTACCCGTTCAAACCCCCTTCATTCATGTTGCTGACGCCAAATGGTCGCTTCGAAACCCAAACCAAGATTTGCTTGAGCATATCGAATCATCATCCCGAGCACTGGCAGCCATCATGGAGCGTGCGGACTGCTTTAGTTGCACTTATTGCATTCATGCCTACCAACCCAAATGGTGCGTTAGGTTCACTGGAATATAAGAAGGAAGAAAGGCGTGCCCTGGCTATCAAATCTCGTGCAGCAGCCCCAAGATATGGCACTGATGAACGCCAGAAGTTAATGGACGAGATTCATGAATATATGCTGAGCAAGGCACCCCCTGTTCCTCAATTGAGCCCCTCCCAGGCTTCGGAAGAGCATCCTTCAAACAAGGAAGGCAATGTTCAGGAGAGTTCCGCAAGCGCTGGATCCACACCCGCTGAGGAAACTGCTGGGGAAGGGCCTGCAAACCCAACAACAGGAGACAGGATTGTCGAAGAAGTTCAGGAAGCCCCTCTGAATGCTAACCCTGCCCCTGTAGCAGCGAGGGCGGTGAATGAAGCTCCTTCCACTGGATCAAGTCAGCTGCTACAAAGGCCAGAAGTTAAAGTACACAAACCAGCTGATCGATCGCTTGTTCACATGGGCTGCTGTTGGACTTACCATCGCAATCATGGTTCTTCTATTTAA

Protein Analysis

357

Amino Acids

39.14

Weight (kDa)

7.17

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 872
AbsI CCTCGAGG 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 715
AccB7I CCANNNNNTGG 1 cut(s) 656
AccI GTMKAC 1 cut(s) 11
AclWI GGATC 9 cut(s) 160, 165, 170, 175, 180, 190, 804, 817, 964
AcsI RAATTY 2 cut(s) 359, 372
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 3 cut(s) 215, 407, 993
AfeI AGCGCT 1 cut(s) 805
AfiI CCNNNNNNNGG 7 cut(s) 307, 507, 656, 745, 751, 860, 953
AgsI TTSAA 3 cut(s) 114, 415, 768
AjiI CACGTC 1 cut(s) 15
AjnI CCWGG 2 cut(s) 621, 744
AloI GAACNNNNNNTCC 2 cut(s) 395, 427
AluBI AGCT 3 cut(s) 944, 967, 1004
AluI AGCT 3 cut(s) 944, 967, 1004
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 858
AlwI GGATC 9 cut(s) 160, 165, 170, 175, 180, 190, 804, 817, 964
Ama87I CYCGRG 2 cut(s) 305, 500
Aor51HI AGCGCT 1 cut(s) 805
AoxI GGCC 3 cut(s) 343, 842, 977
ApeKI GCWGC 7 cut(s) 4, 511, 641, 644, 923, 967, 1029
ApoI RAATTY 2 cut(s) 359, 372
ArsI GACNNNNNNTTYG 4 cut(s) 314, 344, 346, 376
Asp700I GAANNNNTTC 1 cut(s) 882
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 3 cut(s) 187, 344, 842
AsuC2I CCSGG 3 cut(s) 52, 118, 230
AsuHPI GGTGA 2 cut(s) 247, 946
AsuII TTCGAA 2 cut(s) 363, 456
AvaI CYCGRG 2 cut(s) 305, 500
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 622
BamHI GGATCC 1 cut(s) 809
BanI GGYRCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 740
BarI GAAGNNNNNNTAC 2 cut(s) 975, 1007
BauI CACGAG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 507
BbvCI CCTCAGC 1 cut(s) 822
BbvI GCAGC 7 cut(s) 16, 523, 653, 656, 935, 954, 1016
BccI CCATC 3 cut(s) 193, 523, 1053
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 2 cut(s) 623, 746
BcnI CCSGG 3 cut(s) 52, 118, 230
BcoDI GTCTC 1 cut(s) 858
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 918
BfoI RGCGCY 1 cut(s) 807
BisI GCNGC 7 cut(s) 5, 512, 642, 645, 924, 968, 1030
BlpI GCTNAGC 1 cut(s) 707
BlsI GCNGC 7 cut(s) 6, 513, 643, 646, 925, 969, 1031
Bme1390I CCNGG 5 cut(s) 52, 118, 230, 623, 746
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 305, 500
BmgBI CACGTC 1 cut(s) 15
BmgT120I GGNCC 3 cut(s) 187, 344, 842
BmiI GGNNCC 2 cut(s) 717, 811
BmrFI CCNGG 5 cut(s) 52, 118, 230, 623, 746
BmsI GCATC 2 cut(s) 255, 769
Bpu10I CCTNAGC 1 cut(s) 822
Bpu1102I GCTNAGC 1 cut(s) 707
Bpu14I TTCGAA 2 cut(s) 363, 456
BpuEI CTTGAG 1 cut(s) 499
BpuMI CCSGG 3 cut(s) 52, 118, 230
Bsa29I ATCGAT 1 cut(s) 1009
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 3 cut(s) 379, 621, 744
BsaWI WCCGGW 2 cut(s) 189, 219
BsaXI ACNNNNNCTCC 6 cut(s) 112, 142, 197, 227, 395, 425
Bsc4I CCNNNNNNNGG 7 cut(s) 307, 507, 656, 745, 751, 860, 953
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 4 cut(s) 329, 512, 597, 958
Bse3DI GCAATG 1 cut(s) 787
BseBI CCWGG 2 cut(s) 623, 746
BseCI ATCGAT 1 cut(s) 1009
BseDI CCNNGG 3 cut(s) 379, 621, 744
BseGI GGATG 2 cut(s) 496, 760
BseLI CCNNNNNNNGG 7 cut(s) 307, 507, 656, 745, 751, 860, 953
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 2 cut(s) 698, 813
BseNI ACTGG 4 cut(s) 329, 512, 597, 958
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 7 cut(s) 16, 523, 653, 656, 935, 954, 1016
BseYI CCCAGC 1 cut(s) 833
BsgI GTGCAG 1 cut(s) 660
Bsh1285I CGRYCG 1 cut(s) 1013
BshFI GGCC 3 cut(s) 345, 844, 979
BshNI GGYRCC 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 1009
BsiEI CGRYCG 1 cut(s) 1013
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 2 cut(s) 305, 500
BsiSI CCGG 6 cut(s) 52, 117, 190, 220, 230, 398
BslI CCNNNNNNNGG 7 cut(s) 307, 507, 656, 745, 751, 860, 953
BsmAI GTCTC 1 cut(s) 858
BsmI GAATGC 2 cut(s) 554, 907
BsnI GGCC 3 cut(s) 345, 844, 979
BsoBI CYCGRG 2 cut(s) 305, 500
Bsp119I TTCGAA 2 cut(s) 363, 456
Bsp1286I GDGCHC 3 cut(s) 507, 622, 740
Bsp1720I GCTNAGC 1 cut(s) 707
Bsp19I CCATGG 1 cut(s) 379
BspANI GGCC 3 cut(s) 345, 844, 979
BspCNI CTCAG 2 cut(s) 699, 814
BspDI ATCGAT 1 cut(s) 1009
BspHI TCATGA 2 cut(s) 291, 694
BspLI GGNNCC 2 cut(s) 717, 811
BspPI GGATC 9 cut(s) 160, 165, 170, 175, 180, 190, 804, 817, 964
BspQI GCTCTTC 1 cut(s) 750
BspT104I TTCGAA 2 cut(s) 363, 456
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 4 cut(s) 329, 512, 597, 958
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 3 cut(s) 379, 621, 744
BssNI GRCGYC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 636
BssT1I CCWWGG 1 cut(s) 379
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 623, 746
Bst6I CTCTTC 1 cut(s) 750
BstACI GRCGYC 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 551
BstBI TTCGAA 2 cut(s) 363, 456
BstC8I GCNNGC 5 cut(s) 399, 527, 618, 802, 846
BstDEI CTNAG 2 cut(s) 707, 822
BstDSI CCRYGG 1 cut(s) 379
BstF5I GGATG 2 cut(s) 496, 760
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 1 cut(s) 806
BstMAI GTCTC 1 cut(s) 858
BstMCI CGRYCG 1 cut(s) 1013
BstMWI GCNNNNNNNGC 9 cut(s) 144, 247, 511, 542, 551, 911, 920, 929, 976
BstNI CCWGG 2 cut(s) 623, 746
BstSCI CCNGG 5 cut(s) 50, 116, 228, 621, 744
BstSFI CTRYAG 1 cut(s) 918
BstSLI GKGCMC 1 cut(s) 622
BstV1I GCAGC 7 cut(s) 16, 523, 653, 656, 935, 954, 1016
BstX2I RGATCY 1 cut(s) 809
BstYI RGATCY 1 cut(s) 809
Bsu15I ATCGAT 1 cut(s) 1009
BsuRI GGCC 3 cut(s) 345, 844, 979
BsuTUI ATCGAT 1 cut(s) 1009
BtgI CCRYGG 1 cut(s) 379
BtgZI GCGATG 2 cut(s) 212, 1031
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 2 cut(s) 496, 760
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 5 cut(s) 154, 505, 590, 660, 951
Cac8I GCNNGC 5 cut(s) 399, 527, 618, 802, 846
CciI TCATGA 2 cut(s) 291, 694
CfoI GCGC 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 3 cut(s) 187, 344, 842
ClaI ATCGAT 1 cut(s) 1009
CpoI CGGWCCG 1 cut(s) 187
CseI GACGC 1 cut(s) 448
Csp6I GTAC 3 cut(s) 214, 406, 992
CspI CGGWCCG 1 cut(s) 187
CviAII CATG 8 cut(s) 292, 380, 430, 519, 559, 695, 1024, 1055
CviQI GTAC 3 cut(s) 214, 406, 992
DdeI CTNAG 2 cut(s) 707, 822
DrdI GACNNNNNNGTC 1 cut(s) 872
DseDI GACNNNNNNGTC 1 cut(s) 872
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 3 cut(s) 218, 400, 416
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 805
Eco88I CYCGRG 2 cut(s) 305, 500
EcoO109I RGGNCCY 2 cut(s) 344, 842
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 621, 744
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 8 cut(s) 295, 383, 433, 522, 562, 698, 1027, 1058
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FatI CATG 8 cut(s) 291, 379, 429, 518, 558, 694, 1023, 1054
FauI CCCGC 1 cut(s) 826
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 7 cut(s) 5, 512, 642, 645, 924, 968, 1030
FokI GGATG 2 cut(s) 483, 747
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 7 cut(s) 5, 512, 642, 645, 924, 968, 1030
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 805
GluI GCNGC 7 cut(s) 5, 512, 642, 645, 924, 968, 1030
GsaI CCCAGC 1 cut(s) 837
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 3 cut(s) 345, 844, 979
HapII CCGG 6 cut(s) 52, 117, 190, 220, 230, 398
HgaI GACGC 1 cut(s) 448
HhaI GCGC 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 8 cut(s) 295, 383, 433, 522, 562, 698, 1027, 1058
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 3 cut(s) 388, 490, 691
HpaII CCGG 6 cut(s) 52, 117, 190, 220, 230, 398
HphI GGTGA 2 cut(s) 247, 946
Hpy166II GTNNAC 5 cut(s) 12, 43, 590, 994, 1021
Hpy188I TCNGA 9 cut(s) 157, 162, 167, 172, 187, 283, 341, 754, 900
Hpy188III TCNNGA 5 cut(s) 292, 500, 695, 788, 887
Hpy8I GTNNAC 5 cut(s) 12, 43, 590, 994, 1021
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 7 cut(s) 359, 432, 598, 770, 774, 833, 957
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 8 cut(s) 4, 250, 268, 335, 545, 554, 641, 848
HpyF10VI GCNNNNNNNGC 9 cut(s) 144, 247, 511, 542, 551, 911, 920, 929, 976
HpyF3I CTNAG 2 cut(s) 707, 822
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 8 cut(s) 295, 383, 433, 522, 562, 698, 1027, 1058
HspAI GCGC 1 cut(s) 804
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 2 cut(s) 522, 949
Lsp1109I GCAGC 7 cut(s) 16, 523, 653, 656, 935, 954, 1016
LweI GCATC 2 cut(s) 255, 769
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 350
MboII GAAGA 5 cut(s) 235, 620, 767, 890, 1053
MfeI CAATTG 1 cut(s) 731
MflI RGATCY 1 cut(s) 809
MhlI GDGCHC 3 cut(s) 507, 622, 740
MluCI AATT 6 cut(s) 96, 109, 329, 359, 372, 731
MmeI TCCRAC 1 cut(s) 1016
MroNI GCCGGC 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 882
MseI TTAA 5 cut(s) 108, 258, 680, 987, 1069
MspA1I CMGCKG 3 cut(s) 821, 967, 1004
MspI CCGG 6 cut(s) 52, 117, 190, 220, 230, 398
MspR9I CCNGG 5 cut(s) 52, 118, 230, 623, 746
MunI CAATTG 1 cut(s) 731
Mva1269I GAATGC 2 cut(s) 554, 907
MvaI CCWGG 2 cut(s) 623, 746
MwoI GCNNNNNNNGC 9 cut(s) 144, 247, 511, 542, 551, 911, 920, 929, 976
NaeI GCCGGC 1 cut(s) 399
NciI CCSGG 3 cut(s) 52, 118, 230
NcoI CCATGG 1 cut(s) 379
NgoMIV GCCGGC 1 cut(s) 397
NlaIII CATG 8 cut(s) 295, 383, 433, 522, 562, 698, 1027, 1058
NlaIV GGNNCC 2 cut(s) 717, 811
NmuCI GTSAC 1 cut(s) 350
NspV TTCGAA 2 cut(s) 363, 456
PaeR7I CTCGAG 1 cut(s) 305
PagI TCATGA 2 cut(s) 291, 694
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 2 cut(s) 554, 907
PdiI GCCGGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 882
PfeI GAWTC 3 cut(s) 388, 490, 691
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 7 cut(s) 6, 513, 643, 646, 925, 969, 1031
Ple19I CGATCG 1 cut(s) 1013
Psp6I CCWGG 2 cut(s) 621, 744
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 2 cut(s) 621, 744
PspN4I GGNNCC 2 cut(s) 717, 811
PspPI GGNCC 3 cut(s) 187, 344, 842
PspXI VCTCGAGB 1 cut(s) 305
PsuI RGATCY 1 cut(s) 809
PvuI CGATCG 1 cut(s) 1013
PvuII CAGCTG 2 cut(s) 967, 1004
RsaI GTAC 3 cut(s) 215, 407, 993
RsaNI GTAC 3 cut(s) 214, 406, 992
Rsr2I CGGWCCG 1 cut(s) 187
RsrII CGGWCCG 1 cut(s) 187
SalI GTCGAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 5 cut(s) 108, 258, 680, 987, 1069
SatI GCNGC 7 cut(s) 5, 512, 642, 645, 924, 968, 1030
Sau96I GGNCC 3 cut(s) 187, 344, 842
ScrFI CCNGG 5 cut(s) 52, 118, 230, 623, 746
SduI GDGCHC 3 cut(s) 507, 622, 740
SetI ASST 8 cut(s) 17, 127, 258, 370, 589, 946, 969, 1006
SfaNI GCATC 2 cut(s) 255, 769
SfcI CTRYAG 1 cut(s) 918
Sfr274I CTCGAG 1 cut(s) 305
SfuI TTCGAA 2 cut(s) 363, 456
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 305, 478
SmoI CTYRAG 2 cut(s) 305, 478
Sse9I AATT 6 cut(s) 96, 109, 329, 359, 372, 731
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 5 cut(s) 50, 116, 228, 621, 744
StyI CCWWGG 1 cut(s) 379
TaiI ACGT 1 cut(s) 17
TaqI TCGA 7 cut(s) 11, 306, 363, 456, 488, 876, 1009
TasI AATT 6 cut(s) 96, 109, 329, 359, 372, 731
TatI WGTACW 2 cut(s) 213, 991
TfiI GAWTC 3 cut(s) 388, 490, 691
Tru1I TTAA 5 cut(s) 108, 258, 680, 987, 1069
Tru9I TTAA 5 cut(s) 108, 258, 680, 987, 1069
TscAI CASTG 5 cut(s) 154, 512, 597, 667, 958
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 7 cut(s) 4, 511, 641, 644, 923, 967, 1029
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 9 cut(s) 93, 280, 414, 418, 547, 681, 683, 711, 954
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 5 cut(s) 154, 512, 597, 667, 958
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 2 cut(s) 359, 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 882
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.