Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009608

Physical Location & Seq

Genomic Coordinates Reverse (-)

9366984 .. 9368817

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGGAGGACAAGTACAACCTGAAGAACCCGGCGGTGAAGCGGATACTGCAGGAGGTTAAGGAGATGCAATCCAAACCCTCCGACGATTTCATGAGCCTCCCCCTCGAGGAGAACATATTTGACTGGCAATTTGCAATCAGAGGCCCTAGTGATACCGAATTCGAAGGTGGGATTTACCACGGGCGTATCCAGTTGCCGGCGGAGTACCCGTTCAAACCCCCTTCATTCATGTTGCTGACGCCAAATGGTCGCTTCGAAACCCAAACCAAGATTTGCTTGAGCATATCGAATCATCATCCCGAGCATTGGCAGCCATCATGGAGCGTGCGGACTGCTTTAGTTGCAATTATTGCATTCATGCCTACCAACCCAAATGGTGCATTAGGTTCACTGGAATACAAGAAGGAAGAAAGGCGTTCTCTGGCCATCAAATCTCGTGCAGCAGCCCCTAGATATGGCACTGCAGAACGCCAAAAGTTAATGGATGAGATTCATGAATGTATGCTGAGCAAGGCACCCCCTGTCCCTCAACTGAGCCCCTCACAGGCTTCGGAAGAGCATCCTTCAAACAAGGAAGGCGATGTTCAGGAGAGTTCCGAAAGCGCTGGAGCCACACCCCCTGAGGAAACTTCTGGGGAAGGGCCTGCAAACCCAACAGCGGGAGACAGGATTGTTGAAGAAGTACAGGAAGCCCCTCTGAATGCTAACCCTGCCCCTGAAGTAGCAAGGGCGTTGAATGGAGCTCCTTCCGCCGGATCAAGTCAGCTGCTACAGAGGCCAGAAGTTAAAGTACAAAAAGCAGCTGACGATCGCTTGTTCACATGGGCTGCTGTTGGACTTACCTTTGCAATCATGGTTCTGCTTTTTAAGAAGTTTATGAAATCCAGCGGACACGGTGCTGTTTTCATGGATGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

308

Amino Acids

33.81

Weight (kDa)

5.4

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17000
fragaria_vesca	FvH4_4g19560 FvH4_4g19560 FvH4_4g19560
malus_domestica	MD13G1155700.v1.1 MD16G1155400.v1.1
prunus_persica	Prupe.1G119000_v2.0.a1 Prupe.1G119000_v2.0.a1
pyrus_communis	pycom13g13270 pycom16g13170
rosa_chinensis	RchiOBHm_Chr4g0424811
rosa_laevigata	RLG00000007420
rosa_multiflora	Rmu_sc0003608.1_g000021 Rmu_sc0007418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367030
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257000 Rh4BG262300 Rh4CG273300 Rh4DG258100
rosa_wichuraiana	Rw4G022170 Rw4G024030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	517
AciI	CCGC	8 cut(s)	5, 35, 43, 203, 331, 662, 753, 891
AclWI	GGATC	1 cut(s)	766
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	44, 741
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	4 cut(s)	17, 209, 687, 795
AfeI	AGCGCT	1 cut(s)	607
AfiI	CCNNNNNNNGG	8 cut(s)	109, 199, 309, 458, 547, 661, 662, 755
AgsI	TTSAA	4 cut(s)	217, 570, 680, 739
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	746, 769, 806
AluI	AGCT	3 cut(s)	746, 769, 806
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	766
Ama87I	CYCGRG	2 cut(s)	107, 302
Aor51HI	AGCGCT	1 cut(s)	607
AoxI	GGCC	4 cut(s)	145, 426, 644, 779
ApeKI	GCWGC	6 cut(s)	313, 443, 446, 769, 803, 830
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	146, 644
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	2 cut(s)	165, 258
AvaI	CYCGRG	2 cut(s)	107, 302
AxyI	CCTNAGG	1 cut(s)	624
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BalI	TGGCCA	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	542, 748
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	6 cut(s)	325, 455, 458, 756, 815, 817
BccI	CCATC	2 cut(s)	325, 437
BciVI	GTATCC	2 cut(s)	39, 200
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	150, 453
BfmI	CTRYAG	3 cut(s)	50, 465, 773
BfoI	RGCGCY	1 cut(s)	609
BfuI	GTATCC	2 cut(s)	39, 200
BisI	GCNGC	6 cut(s)	314, 444, 447, 770, 804, 831
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	6 cut(s)	315, 445, 448, 771, 805, 832
Bme1390I	CCNGG	1 cut(s)	32
BmeT110I	CYCGRG	2 cut(s)	107, 302
BmgT120I	GGNCC	2 cut(s)	146, 644
BmiI	GGNNCC	2 cut(s)	519, 613
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	57, 571
BpmI	CTGGAG	1 cut(s)	630
Bpu1102I	GCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	2 cut(s)	165, 258
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 197, 227
Bsc4I	CCNNNNNNNGG	8 cut(s)	109, 199, 309, 458, 547, 661, 662, 755
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	3 cut(s)	131, 193, 399
Bse21I	CCTNAGG	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	4 cut(s)	298, 493, 562, 919
BseLI	CCNNNNNNNGG	8 cut(s)	109, 199, 309, 458, 547, 661, 662, 755
BseMII	CTCAG	3 cut(s)	500, 527, 615
BseNI	ACTGG	3 cut(s)	131, 193, 399
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	6 cut(s)	325, 455, 458, 756, 815, 817
BsgI	GTGCAG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	4 cut(s)	147, 428, 646, 781
BshNI	GGYRCC	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	2 cut(s)	107, 302
BsiSI	CCGG	3 cut(s)	32, 200, 756
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	8 cut(s)	109, 199, 309, 458, 547, 661, 662, 755
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	2 cut(s)	356, 709
BsnI	GGCC	4 cut(s)	147, 428, 646, 781
BsoBI	CYCGRG	2 cut(s)	107, 302
Bsp119I	TTCGAA	2 cut(s)	165, 258
Bsp1286I	GDGCHC	2 cut(s)	542, 748
Bsp143I	GATC	2 cut(s)	758, 811
Bsp1720I	GCTNAGC	1 cut(s)	509
BspACI	CCGC	8 cut(s)	5, 35, 43, 203, 331, 662, 753, 891
BspANI	GGCC	4 cut(s)	147, 428, 646, 781
BspCNI	CTCAG	3 cut(s)	501, 528, 616
BspHI	TCATGA	2 cut(s)	93, 496
BspLI	GGNNCC	2 cut(s)	519, 613
BspMAI	CTGCAG	2 cut(s)	54, 469
BspPI	GGATC	1 cut(s)	766
BspQI	GCTCTTC	1 cut(s)	552
BspT104I	TTCGAA	2 cut(s)	165, 258
BspT107I	GGYRCC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	3 cut(s)	131, 193, 399
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	758, 811
BssNI	GRCGYC	1 cut(s)	242
BssSI	CACGAG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	899
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstBI	TTCGAA	2 cut(s)	165, 258
BstC8I	GCNNGC	3 cut(s)	201, 329, 648
BstDEI	CTNAG	4 cut(s)	509, 536, 624, 921
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	4 cut(s)	298, 493, 562, 919
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	2 cut(s)	761, 814
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	758, 811
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	7 cut(s)	49, 313, 344, 353, 713, 752, 778
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	3 cut(s)	50, 465, 773
BstV1I	GCAGC	6 cut(s)	325, 455, 458, 756, 815, 817
Bsu36I	CCTNAGG	1 cut(s)	624
BsuI	GTATCC	2 cut(s)	39, 200
BsuRI	GGCC	4 cut(s)	147, 428, 646, 781
BtgI	CCRYGG	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	4 cut(s)	298, 493, 562, 919
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	392, 462
Cac8I	GCNNGC	3 cut(s)	201, 329, 648
CciI	TCATGA	2 cut(s)	93, 496
CfoI	GCGC	1 cut(s)	608
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	146, 644
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	4 cut(s)	16, 208, 686, 794
CviAII	CATG	8 cut(s)	94, 232, 321, 361, 497, 825, 856, 910
CviQI	GTAC	4 cut(s)	16, 208, 686, 794
DdeI	CTNAG	4 cut(s)	509, 536, 624, 921
DpnI	GATC	2 cut(s)	760, 813
DpnII	GATC	2 cut(s)	758, 811
EaeI	YGGCCR	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	3 cut(s)	20, 218, 742
Ecl136II	GAGCTC	1 cut(s)	746
Eco24I	GRGCYC	2 cut(s)	542, 748
Eco47III	AGCGCT	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	746
Eco57I	CTGAAG	2 cut(s)	44, 741
Eco81I	CCTNAGG	1 cut(s)	624
Eco88I	CYCGRG	2 cut(s)	107, 302
EcoICRI	GAGCTC	1 cut(s)	746
EcoO109I	RGGNCCY	2 cut(s)	146, 644
EcoRI	GAATTC	1 cut(s)	161
EcoT38I	GRGCYC	2 cut(s)	542, 748
FaeI	CATG	8 cut(s)	97, 235, 324, 364, 500, 828, 859, 913
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	8 cut(s)	93, 231, 320, 360, 496, 824, 855, 909
FauI	CCCGC	1 cut(s)	655
Fnu4HI	GCNGC	6 cut(s)	314, 444, 447, 770, 804, 831
FokI	GGATG	3 cut(s)	285, 500, 549
FriOI	GRGCYC	2 cut(s)	542, 748
Fsp4HI	GCNGC	6 cut(s)	314, 444, 447, 770, 804, 831
FspBI	CTAG	2 cut(s)	150, 453
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	6 cut(s)	314, 444, 447, 770, 804, 831
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	4 cut(s)	147, 428, 646, 781
HapII	CCGG	3 cut(s)	32, 200, 756
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	8 cut(s)	97, 235, 324, 364, 500, 828, 859, 913
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	3 cut(s)	292, 493, 917
HpaII	CCGG	3 cut(s)	32, 200, 756
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	392, 822
Hpy188I	TCNGA	5 cut(s)	85, 143, 556, 601, 702
Hpy188III	TCNNGA	4 cut(s)	94, 302, 497, 590
Hpy8I	GTNNAC	2 cut(s)	392, 822
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	7 cut(s)	161, 234, 400, 572, 576, 635, 759
HpyCH4III	ACNGT	1 cut(s)	899
HpyF10VI	GCNNNNNNNGC	7 cut(s)	49, 313, 344, 353, 713, 752, 778
HpyF3I	CTNAG	4 cut(s)	509, 536, 624, 921
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	8 cut(s)	97, 235, 324, 364, 500, 828, 859, 913
HspAI	GCGC	1 cut(s)	606
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	758, 811
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	4 cut(s)	324, 611, 743, 751
Lsp1109I	GCAGC	6 cut(s)	325, 455, 458, 756, 815, 817
LweI	GCATC	2 cut(s)	57, 571
MaeI	CTAG	2 cut(s)	150, 453
MalI	GATC	2 cut(s)	760, 813
MboI	GATC	2 cut(s)	758, 811
MboII	GAAGA	4 cut(s)	37, 422, 569, 692
MhlI	GDGCHC	2 cut(s)	542, 748
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	3 cut(s)	131, 161, 348
MluNI	TGGCCA	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	108, 817
Mox20I	TGGCCA	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	4 cut(s)	60, 482, 789, 870
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	4 cut(s)	662, 769, 806, 891
MspI	CCGG	3 cut(s)	32, 200, 756
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	2 cut(s)	356, 709
MwoI	GCNNNNNNNGC	7 cut(s)	49, 313, 344, 353, 713, 752, 778
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	758, 811
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	8 cut(s)	97, 235, 324, 364, 500, 828, 859, 913
NlaIV	GGNNCC	2 cut(s)	519, 613
NspV	TTCGAA	2 cut(s)	165, 258
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	2 cut(s)	93, 496
PciSI	GCTCTTC	1 cut(s)	552
PctI	GAATGC	2 cut(s)	356, 709
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	292, 493, 917
PkrI	GCNGC	6 cut(s)	315, 445, 448, 771, 805, 832
Ple19I	CGATCG	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	519, 613
PspPI	GGNCC	2 cut(s)	146, 644
PspXI	VCTCGAGB	1 cut(s)	107
PstI	CTGCAG	2 cut(s)	54, 469
PvuI	CGATCG	1 cut(s)	814
PvuII	CAGCTG	2 cut(s)	769, 806
RsaI	GTAC	4 cut(s)	17, 209, 687, 795
RsaNI	GTAC	4 cut(s)	16, 208, 686, 794
SacI	GAGCTC	1 cut(s)	748
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	60, 482, 789, 870
SatI	GCNGC	6 cut(s)	314, 444, 447, 770, 804, 831
Sau3AI	GATC	2 cut(s)	758, 811
Sau96I	GGNCC	2 cut(s)	146, 644
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	542, 748
SetI	ASST	8 cut(s)	24, 60, 172, 391, 748, 771, 808, 848
SfaNI	GCATC	2 cut(s)	57, 571
SfcI	CTRYAG	3 cut(s)	50, 465, 773
Sfr274I	CTCGAG	1 cut(s)	107
SfuI	TTCGAA	2 cut(s)	165, 258
SlaI	CTCGAG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	107, 280
SmoI	CTYRAG	2 cut(s)	107, 280
Sse9I	AATT	3 cut(s)	131, 161, 348
SsiI	CCGC	8 cut(s)	5, 35, 43, 203, 331, 662, 753, 891
SspMI	CTAG	2 cut(s)	150, 453
SstI	GAGCTC	1 cut(s)	748
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	899
TaqI	TCGA	4 cut(s)	108, 165, 258, 290
TasI	AATT	3 cut(s)	131, 161, 348
TatI	WGTACW	3 cut(s)	15, 685, 793
TfiI	GAWTC	3 cut(s)	292, 493, 917
Tru1I	TTAA	4 cut(s)	60, 482, 789, 870
Tru9I	TTAA	4 cut(s)	60, 482, 789, 870
TscAI	CASTG	2 cut(s)	399, 469
TseI	GCWGC	6 cut(s)	313, 443, 446, 769, 803, 830
TspDTI	ATGAA	8 cut(s)	82, 216, 220, 349, 485, 513, 896, 898
TspRI	CASTG	2 cut(s)	399, 469
XapI	RAATTY	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	2 cut(s)	150, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.