Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009608

Physical Location & Seq

Genomic Coordinates Forward (+)

52830502 .. 52832819

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGAAGACAAGTACAACCGGAAGAACCCAGCCGTGAAGCGAATTCTTCAGGAGGTCAAGGAGATGCAATCCAATCCCTCCGACGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTGACTGGCAATTTGCAATTCGAGGCCCTCGGGATACTGAATTCGAGGGTGGCATTTATCATGGGAGGATTCAATTGCCGGCGGAGTACCCATTCAAGCCTCCTTCCTTCATGTTGTTGACGCCTAATGGTCGTTTTGAAACGCAAACCAAGATTTGCTTAAGCATATCGAATCATCATCCTGAGCACTGGCAACCATCATGGAGCGTGCGGACTGCTTTAGTTGCTCTTATTGCATTCATGCCCACCCACCCAAATGGTGCATTGGGTTCACTGGAATACAAAAAGGAAGAAAGGCGTACTCTGGCTGTCAAATCTCGTGAGACAGCCCCAAGATTTGGAACTCCTGAACGTCAGAAGATAATTGATGAGATTCATGAATATATGCTAAGCAAGGCGCCACCTGTTCCTGAAATAAACCCCTCACCAGCTTCAGAAGAGCATTCTTCAAGCAGGGAAGGTGAGATTGACAGGAGTTCACAAAATGCTGGAGCCACACTCACTGGGGAAGAGCTCCCAAACCCAGCAGCAGATGACAGGATTGTTGAAGAAGTACAGGAAGCCCCCCTGAATGCTAACCCCACCCCTGAAATACCAAGGGTGTTGAATGAAGCTCCTTCCGGTGGATCAAGTCGGGTTGTACAGAGGCCAGAAATGAAAGTTCAGAAACCAACTGAAGATCGATTGTTCACATTGGCTGCTGTTGGACTTACCATTGCCATTTTGGTTCTTCTACTGAAGAAGTTTATGAAATCTAGCGGACATGGTGCCGTGTTCATGGACGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

303

Amino Acids

33.95

Weight (kDa)

5.6

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 126	1.1e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17000
fragaria_vesca	FvH4_4g19560 FvH4_4g19560 FvH4_4g19560
malus_domestica	MD13G1155700.v1.1 MD16G1155400.v1.1
prunus_persica	Prupe.1G119000_v2.0.a1 Prupe.1G119000_v2.0.a1
pyrus_communis	pycom13g13270 pycom16g13170
rosa_chinensis	RchiOBHm_Chr4g0424811
rosa_laevigata	RLG00000007420
rosa_multiflora	Rmu_sc0003608.1_g000021 Rmu_sc0007418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367030
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257000 Rh4BG262300 Rh4CG273300 Rh4DG258100
rosa_wichuraiana	Rw4G022170 Rw4G024030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	517, 887
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	4 cut(s)	5, 203, 331, 879
AclWI	GGATC	1 cut(s)	754
AcsI	RAATTY	2 cut(s)	45, 161
AcuI	CTGAAG	4 cut(s)	35, 537, 816, 878
AcyI	GRCGYC	2 cut(s)	242, 518
AfaI	GTAC	5 cut(s)	17, 209, 421, 675, 762
AfiI	CCNNNNNNNGG	3 cut(s)	109, 458, 743
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	6 cut(s)	194, 217, 260, 570, 668, 727
AluBI	AGCT	3 cut(s)	551, 634, 734
AluI	AGCT	3 cut(s)	551, 634, 734
Alw21I	GWGCWC	2 cut(s)	309, 636
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	754
Ama87I	CYCGRG	2 cut(s)	107, 150
AoxI	GGCC	2 cut(s)	145, 767
ApeKI	GCWGC	2 cut(s)	647, 818
ApoI	RAATTY	2 cut(s)	45, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	537, 593
AvaI	CYCGRG	2 cut(s)	107, 150
BanI	GGYRCC	2 cut(s)	517, 887
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	309, 636
BbvI	GCAGC	2 cut(s)	659, 805
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	2 cut(s)	20, 875
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	876
BfoI	RGCGCY	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	648, 819
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	2 cut(s)	649, 820
BmeT110I	CYCGRG	2 cut(s)	107, 150
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	519, 613, 889
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	4 cut(s)	88, 120, 603, 635
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	509
Bsa29I	ATCGAT	1 cut(s)	802
BsaHI	GRCGYC	2 cut(s)	242, 518
BsaJI	CCNNGG	2 cut(s)	149, 716
BsaWI	WCCGGW	2 cut(s)	21, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 458, 743
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	4 cut(s)	131, 314, 399, 628
Bse3DI	GCAATG	1 cut(s)	834
BseCI	ATCGAT	1 cut(s)	802
BseDI	CCNNGG	2 cut(s)	149, 716
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	109, 458, 743
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	4 cut(s)	131, 314, 399, 628
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	659, 805
BseYI	CCCAGC	2 cut(s)	31, 643
BshFI	GGCC	2 cut(s)	147, 769
BshNI	GGYRCC	2 cut(s)	517, 887
BshVI	ATCGAT	1 cut(s)	802
BsiHKAI	GWGCWC	2 cut(s)	309, 636
BsiHKCI	CYCGRG	2 cut(s)	107, 150
BsiSI	CCGG	3 cut(s)	22, 200, 741
BslI	CCNNNNNNNGG	3 cut(s)	109, 458, 743
BsmAI	GTCTC	1 cut(s)	437
BsmI	GAATGC	3 cut(s)	356, 562, 697
BsnI	GGCC	2 cut(s)	147, 769
BsoBI	CYCGRG	2 cut(s)	107, 150
Bsp1286I	GDGCHC	2 cut(s)	309, 636
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	2 cut(s)	746, 799
Bsp1720I	GCTNAGC	1 cut(s)	509
BspACI	CCGC	4 cut(s)	5, 203, 331, 879
BspANI	GGCC	2 cut(s)	147, 769
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	802
BspHI	TCATGA	2 cut(s)	93, 496
BspLI	GGNNCC	3 cut(s)	519, 613, 889
BspPI	GGATC	1 cut(s)	754
BspQI	GCTCTTC	2 cut(s)	552, 624
BspT107I	GGYRCC	2 cut(s)	517, 887
BspTI	CTTAAG	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	131, 314, 399, 628
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	149, 716
BssMI	GATC	2 cut(s)	746, 799
BssNI	GRCGYC	2 cut(s)	242, 518
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	716
Bst2BI	CACGAG	1 cut(s)	438
Bst6I	CTCTTC	2 cut(s)	552, 624
BstACI	GRCGYC	2 cut(s)	242, 518
BstAFI	CTTAAG	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	201, 329
BstDEI	CTNAG	3 cut(s)	303, 509, 909
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	2 cut(s)	749, 802
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	746, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 353
BstV1I	GCAGC	2 cut(s)	659, 805
BstV2I	GAAGAC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	377
Bsu15I	ATCGAT	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	147, 769
BsuTUI	ATCGAT	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	307, 392, 621
Cac8I	GCNNGC	2 cut(s)	201, 329
CciI	TCATGA	2 cut(s)	93, 496
CfoI	GCGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	802
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	5 cut(s)	16, 208, 420, 674, 761
CviAII	CATG	8 cut(s)	94, 182, 232, 321, 361, 497, 884, 898
CviQI	GTAC	5 cut(s)	16, 208, 420, 674, 761
DdeI	CTNAG	3 cut(s)	303, 509, 909
DinI	GGCGCC	1 cut(s)	519
DpnI	GATC	2 cut(s)	748, 801
DpnII	GATC	2 cut(s)	746, 799
Eam1104I	CTCTTC	2 cut(s)	552, 624
EarI	CTCTTC	2 cut(s)	552, 624
EciI	GGCGGA	2 cut(s)	20, 218
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	4 cut(s)	35, 537, 816, 878
Eco88I	CYCGRG	2 cut(s)	107, 150
EcoICRI	GAGCTC	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	2 cut(s)	45, 161
EcoT14I	CCWWGG	1 cut(s)	716
EcoT38I	GRGCYC	1 cut(s)	636
EgeI	GGCGCC	1 cut(s)	519
EheI	GGCGCC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	716
FaeI	CATG	8 cut(s)	97, 185, 235, 324, 364, 500, 887, 901
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	8 cut(s)	93, 181, 231, 320, 360, 496, 883, 897
Fnu4HI	GCNGC	2 cut(s)	648, 819
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	2 cut(s)	648, 819
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	2 cut(s)	648, 819
GsaI	CCCAGC	2 cut(s)	35, 647
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	147, 769
HapII	CCGG	3 cut(s)	22, 200, 741
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	1 cut(s)	520
Hin1I	GRCGYC	2 cut(s)	242, 518
Hin1II	CATG	8 cut(s)	97, 185, 235, 324, 364, 500, 887, 901
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	4 cut(s)	190, 292, 493, 905
HpaII	CCGG	3 cut(s)	22, 200, 741
HphI	GGTGA	2 cut(s)	537, 593
Hpy166II	GTNNAC	4 cut(s)	240, 392, 599, 810
Hpy188I	TCNGA	4 cut(s)	85, 477, 556, 786
Hpy188III	TCNNGA	9 cut(s)	53, 94, 107, 152, 302, 440, 467, 497, 530
Hpy8I	GTNNAC	4 cut(s)	240, 392, 599, 810
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	234, 238, 572, 747
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	4 cut(s)	70, 137, 356, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 353
HpyF3I	CTNAG	3 cut(s)	303, 509, 909
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	2 cut(s)	242, 518
Hsp92II	CATG	8 cut(s)	97, 185, 235, 324, 364, 500, 887, 901
HspAI	GCGC	1 cut(s)	518
KasI	GGCGCC	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	746, 799
LguI	GCTCTTC	2 cut(s)	552, 624
LmnI	GCTCC	4 cut(s)	324, 611, 639, 739
Lsp1109I	GCAGC	2 cut(s)	659, 805
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	1 cut(s)	472
MalI	GATC	2 cut(s)	748, 801
MboI	GATC	2 cut(s)	746, 799
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	309, 636
MluCI	AATT	6 cut(s)	45, 131, 138, 161, 194, 483
Mly113I	GGCGCC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	108, 805
MroNI	GCCGGC	1 cut(s)	199
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	375
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	3 cut(s)	22, 200, 741
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	3 cut(s)	356, 562, 697
MwoI	GCNNNNNNNGC	2 cut(s)	344, 353
NaeI	GCCGGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	518
NdeII	GATC	2 cut(s)	746, 799
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	8 cut(s)	97, 185, 235, 324, 364, 500, 887, 901
NlaIV	GGNNCC	3 cut(s)	519, 613, 889
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	2 cut(s)	93, 496
PciSI	GCTCTTC	2 cut(s)	552, 624
PctI	GAATGC	3 cut(s)	356, 562, 697
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	190, 292, 493
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	649, 820
PluTI	GGCGCC	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	636
PspFI	CCCAGC	2 cut(s)	31, 643
PspN4I	GGNNCC	3 cut(s)	519, 613, 889
PspPI	GGNCC	1 cut(s)	146
RsaI	GTAC	5 cut(s)	17, 209, 421, 675, 762
RsaNI	GTAC	5 cut(s)	16, 208, 420, 674, 761
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	636
SapI	GCTCTTC	2 cut(s)	552, 624
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	648, 819
Sau3AI	GATC	2 cut(s)	746, 799
Sau96I	GGNCC	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	309, 636
SetI	ASST	7 cut(s)	60, 475, 526, 553, 583, 636, 736
SfaNI	GCATC	1 cut(s)	57
SfoI	GGCGCC	1 cut(s)	519
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	107, 280
SmoI	CTYRAG	2 cut(s)	107, 280
Sse9I	AATT	6 cut(s)	45, 131, 138, 161, 194, 483
SsiI	CCGC	4 cut(s)	5, 203, 331, 879
SspDI	GGCGCC	1 cut(s)	517
SspMI	CTAG	1 cut(s)	876
SstI	GAGCTC	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	716
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	5 cut(s)	108, 142, 165, 290, 802
TasI	AATT	6 cut(s)	45, 131, 138, 161, 194, 483
TatI	WGTACW	3 cut(s)	15, 673, 760
TfiI	GAWTC	3 cut(s)	190, 292, 493
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	3 cut(s)	314, 399, 628
TseI	GCWGC	2 cut(s)	647, 818
TspDTI	ATGAA	9 cut(s)	82, 220, 349, 485, 513, 744, 791, 884, 886
TspRI	CASTG	3 cut(s)	314, 399, 628
Van91I	CCANNNNNTGG	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	45, 161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.