Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009608

Physical Location & Seq

Genomic Coordinates Forward (+)

23185918 .. 23189102

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19560.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGAGGACAAGTACAACCGGAAGAACCCGGCCGTGAAGCGAATCCTGCAGGAGGTCAAGGAGATGCAATCCAATCCCTCCGACGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTGACTGGCAATTTGCGATTCGCGGCCCTCGGGATACGGAATTCGAGGGCGGCATTTACCACGGCAGGATTCAGTTGCCGGCGGAGTATCCGTTTAAGCCTCCGTCGTTCATGCTGTTGACGCCGAATGGCCGGTTCGAGACGCAAACCAAGATTTGCTTGAGCATTTCAAATCATCATCCTGAGCACTGGCAGCCGTCCTGGAGCGTGCGGACTGCTCTAGTTGCTCTTATTGCATTCATGCCCACCCACCCAAATGGTGCATTGGGTTCACTGGAATACAAAAAGGAAGAAAGGCGTACTTTGGCTGTCAAATCTCGTGAGACAGCCCCAAGATTCGGAACTCCTGAACGTCAGAAGATCATTGATGAGATTCATGAATATATGCTAAGCAAGGCACCAACTGTTCCTGAAATAAACCCCACACCAGCCTCCAAAGAGCATCCTTCAAGCAGGGAAGGTGAAGTTGATGGGACTACACAAAATGCTGGAGCCACACTCACTGGGGAAGAGCTCCCAAACCCGGGAGCAGATGATAGGATTGTTGAAGAAGTACAGGAAGCCCCTCAGAATGCTAACCCCACCCCCGAAATACCAAGGGTGTTGAATGAAGCTCCTTCCGGCGGATCAACTCGGGTTGTACAAAAGCCAGAAATGAGAGTTCAAAAACCAAATGAAGATCGGTTGTTCACATTGGCTGCCGTTGGACTAACCATTGCCATTTTTGTTCTTCTATTGAAGAAGTTCATGAAATCTAGCGGATATGGTGCCGTGTTTATGGACGAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

304

Amino Acids

33.98

Weight (kDa)

5.63

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 98	3.6e-16	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17000
fragaria_vesca	FvH4_4g19560 FvH4_4g19560 FvH4_4g19560
malus_domestica	MD13G1155700.v1.1 MD16G1155400.v1.1
prunus_persica	Prupe.1G119000_v2.0.a1 Prupe.1G119000_v2.0.a1
pyrus_communis	pycom13g13270 pycom16g13170
rosa_chinensis	RchiOBHm_Chr4g0424811
rosa_laevigata	RLG00000007420
rosa_multiflora	Rmu_sc0003608.1_g000021 Rmu_sc0007418.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367030
rosa_rugosa	Rorug04G0199300
rosa_samantha	Rh4AG257000 Rh4BG262300 Rh4CG273300 Rh4DG258100
rosa_wichuraiana	Rw4G022170 Rw4G024030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	517, 887
AccII	CGCG	1 cut(s)	144
AciI	CCGC	7 cut(s)	5, 144, 171, 203, 331, 744, 879
AclWI	GGATC	1 cut(s)	754
AcoI	YGGCCR	2 cut(s)	33, 250
AcsI	RAATTY	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	4 cut(s)	17, 421, 675, 762
AfiI	CCNNNNNNNGG	6 cut(s)	55, 109, 458, 643, 644, 743
AgsI	TTSAA	6 cut(s)	291, 570, 668, 727, 785, 859
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	634, 734
AluI	AGCT	2 cut(s)	634, 734
Alw21I	GWGCWC	2 cut(s)	309, 636
Alw26I	GTCTC	2 cut(s)	254, 437
AlwI	GGATC	1 cut(s)	754
Ama87I	CYCGRG	4 cut(s)	107, 150, 643, 753
AoxI	GGCC	3 cut(s)	33, 145, 250
ApeKI	GCWGC	2 cut(s)	313, 818
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
Asp700I	GAANNNNTTC	1 cut(s)	863
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	3 cut(s)	32, 644, 645
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	4 cut(s)	107, 150, 643, 753
BanI	GGYRCC	2 cut(s)	517, 887
BanII	GRGCYC	1 cut(s)	636
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	309, 636
BbvI	GCAGC	2 cut(s)	325, 805
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	5 cut(s)	20, 199, 301, 806, 875
BciT130I	CCWGG	1 cut(s)	322
BciVI	GTATCC	2 cut(s)	148, 219
BcnI	CCSGG	3 cut(s)	32, 644, 645
BcoDI	GTCTC	2 cut(s)	254, 437
BfaI	CTAG	2 cut(s)	341, 876
BfmI	CTRYAG	1 cut(s)	50
BfuI	GTATCC	2 cut(s)	148, 219
BisI	GCNGC	4 cut(s)	145, 172, 314, 819
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	4 cut(s)	146, 173, 315, 820
Bme1390I	CCNGG	4 cut(s)	32, 322, 644, 645
BmeT110I	CYCGRG	4 cut(s)	107, 150, 643, 753
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	519, 613, 889
BmrFI	CCNGG	4 cut(s)	32, 322, 644, 645
BmrI	ACTGGG	1 cut(s)	633
BmsI	GCATC	2 cut(s)	57, 571
BmuI	ACTGGG	1 cut(s)	633
BplI	GAGNNNNNCTC	4 cut(s)	88, 120, 603, 635
BpmI	CTGGAG	2 cut(s)	343, 630
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	509
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	3 cut(s)	32, 644, 645
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	4 cut(s)	149, 181, 643, 716
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 197, 227
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 109, 458, 643, 644, 743
Bse118I	RCCGGY	2 cut(s)	199, 252
Bse1I	ACTGG	4 cut(s)	131, 314, 399, 628
Bse3DI	GCAATG	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	4 cut(s)	149, 181, 643, 716
BseGI	GGATG	2 cut(s)	298, 562
BseLI	CCNNNNNNNGG	6 cut(s)	55, 109, 458, 643, 644, 743
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	2 cut(s)	294, 701
BseNI	ACTGG	4 cut(s)	131, 314, 399, 628
BseRI	GAGGAG	1 cut(s)	125
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	325, 805
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	35, 147, 252
BshNI	GGYRCC	2 cut(s)	517, 887
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	309, 636
BsiHKCI	CYCGRG	4 cut(s)	107, 150, 643, 753
BsiSI	CCGG	6 cut(s)	22, 32, 200, 253, 644, 741
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	6 cut(s)	55, 109, 458, 643, 644, 743
BsmAI	GTCTC	2 cut(s)	254, 437
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	2 cut(s)	356, 697
BsnI	GGCC	3 cut(s)	35, 147, 252
BsoBI	CYCGRG	4 cut(s)	107, 150, 643, 753
Bsp1286I	GDGCHC	2 cut(s)	309, 636
Bsp1407I	TGTACA	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	480, 746, 799
Bsp1720I	GCTNAGC	1 cut(s)	509
BspACI	CCGC	7 cut(s)	5, 144, 171, 203, 331, 744, 879
BspANI	GGCC	3 cut(s)	35, 147, 252
BspCNI	CTCAG	2 cut(s)	295, 700
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	3 cut(s)	93, 496, 867
BspLI	GGNNCC	3 cut(s)	519, 613, 889
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	754
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	2 cut(s)	517, 887
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	2 cut(s)	199, 252
BsrGI	TGTACA	1 cut(s)	760
BsrI	ACTGG	4 cut(s)	131, 314, 399, 628
BssAI	RCCGGY	2 cut(s)	199, 252
BssECI	CCNNGG	4 cut(s)	149, 181, 643, 716
BssMI	GATC	3 cut(s)	480, 746, 799
BssNI	GRCGYC	1 cut(s)	242
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	716
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	201, 329
BstDEI	CTNAG	4 cut(s)	303, 509, 687, 909
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	298, 562
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	483, 749, 802
BstMAI	GTCTC	2 cut(s)	254, 437
BstMBI	GATC	3 cut(s)	480, 746, 799
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 241, 313, 344, 353
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	4 cut(s)	30, 320, 642, 643
BstSFI	CTRYAG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	325, 805
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstZI	CGGCCG	1 cut(s)	33
BsuI	GTATCC	2 cut(s)	148, 219
BsuRI	GGCC	3 cut(s)	35, 147, 252
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	298, 562
BtsIMutI	CAGTG	3 cut(s)	307, 392, 621
Cac8I	GCNNGC	2 cut(s)	201, 329
CciI	TCATGA	3 cut(s)	93, 496, 867
Cfr10I	RCCGGY	2 cut(s)	199, 252
Cfr13I	GGNCC	1 cut(s)	146
Cfr9I	CCCGGG	1 cut(s)	643
CseI	GACGC	2 cut(s)	250, 271
Csp6I	GTAC	4 cut(s)	16, 420, 674, 761
CviAII	CATG	5 cut(s)	94, 232, 361, 497, 868
CviQI	GTAC	4 cut(s)	16, 420, 674, 761
DdeI	CTNAG	4 cut(s)	303, 509, 687, 909
DpnI	GATC	3 cut(s)	482, 748, 801
DpnII	GATC	3 cut(s)	480, 746, 799
EaeI	YGGCCR	2 cut(s)	33, 250
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
EciI	GGCGGA	3 cut(s)	20, 218, 759
Ecl136II	GAGCTC	1 cut(s)	634
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	636
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	634
Eco88I	CYCGRG	4 cut(s)	107, 150, 643, 753
EcoICRI	GAGCTC	1 cut(s)	634
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	716
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	716
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	5 cut(s)	97, 235, 364, 500, 871
FalI	AAGNNNNNCTT	4 cut(s)	263, 295, 406, 438
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	5 cut(s)	93, 231, 360, 496, 867
Fnu4HI	GCNGC	4 cut(s)	145, 172, 314, 819
FokI	GGATG	2 cut(s)	285, 549
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	4 cut(s)	145, 172, 314, 819
FspBI	CTAG	2 cut(s)	341, 876
GluI	GCNGC	4 cut(s)	145, 172, 314, 819
GsuI	CTGGAG	2 cut(s)	343, 630
HaeIII	GGCC	3 cut(s)	35, 147, 252
HapII	CCGG	6 cut(s)	22, 32, 200, 253, 644, 741
HgaI	GACGC	2 cut(s)	250, 271
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	5 cut(s)	97, 235, 364, 500, 871
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	6 cut(s)	45, 139, 190, 456, 493, 905
HpaII	CCGG	6 cut(s)	22, 32, 200, 253, 644, 741
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	3 cut(s)	240, 392, 810
Hpy188I	TCNGA	4 cut(s)	85, 461, 477, 690
Hpy8I	GTNNAC	3 cut(s)	240, 392, 810
Hpy99I	CGWCG	2 cut(s)	89, 229
HpyAV	CCTTC	3 cut(s)	572, 576, 747
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	4 cut(s)	52, 70, 356, 383
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 241, 313, 344, 353
HpyF3I	CTNAG	4 cut(s)	303, 509, 687, 909
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	5 cut(s)	97, 235, 364, 500, 871
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	480, 746, 799
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	5 cut(s)	324, 611, 639, 647, 739
Lsp1109I	GCAGC	2 cut(s)	325, 805
LweI	GCATC	2 cut(s)	57, 571
MaeI	CTAG	2 cut(s)	341, 876
MaeII	ACGT	1 cut(s)	472
MalI	GATC	3 cut(s)	482, 748, 801
MboI	GATC	3 cut(s)	480, 746, 799
MboII	GAAGA	8 cut(s)	37, 422, 490, 641, 680, 809, 842, 871
MhlI	GDGCHC	2 cut(s)	309, 636
MluCI	AATT	2 cut(s)	131, 161
MmeI	TCCRAC	2 cut(s)	108, 805
MroNI	GCCGGC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	863
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	6 cut(s)	22, 32, 200, 253, 644, 741
MspR9I	CCNGG	4 cut(s)	32, 322, 644, 645
Mva1269I	GAATGC	2 cut(s)	356, 697
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	5 cut(s)	49, 241, 313, 344, 353
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	3 cut(s)	32, 644, 645
NdeII	GATC	3 cut(s)	480, 746, 799
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	97, 235, 364, 500, 871
NlaIV	GGNNCC	3 cut(s)	519, 613, 889
PaeR7I	CTCGAG	1 cut(s)	107
PagI	TCATGA	3 cut(s)	93, 496, 867
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	2 cut(s)	356, 697
PdiI	GCCGGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	863
PfeI	GAWTC	5 cut(s)	45, 139, 190, 456, 493
PfoI	TCCNGGA	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	146, 173, 315, 820
Psp124BI	GAGCTC	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	519, 613, 889
PspPI	GGNCC	1 cut(s)	146
PstI	CTGCAG	1 cut(s)	54
RsaI	GTAC	4 cut(s)	17, 421, 675, 762
RsaNI	GTAC	4 cut(s)	16, 420, 674, 761
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	636
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	145, 172, 314, 819
Sau3AI	GATC	3 cut(s)	480, 746, 799
Sau96I	GGNCC	1 cut(s)	146
SbfI	CCTGCAGG	1 cut(s)	54
ScrFI	CCNGG	4 cut(s)	32, 322, 644, 645
SdaI	CCTGCAGG	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	309, 636
SetI	ASST	5 cut(s)	60, 475, 583, 636, 736
SfaNI	GCATC	2 cut(s)	57, 571
SfcI	CTRYAG	1 cut(s)	50
Sfr274I	CTCGAG	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	107
SmaI	CCCGGG	1 cut(s)	645
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	107, 280
SmoI	CTYRAG	2 cut(s)	107, 280
Sse8387I	CCTGCAGG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	131, 161
SsiI	CCGC	7 cut(s)	5, 144, 171, 203, 331, 744, 879
SspMI	CTAG	2 cut(s)	341, 876
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	4 cut(s)	30, 320, 642, 643
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	3 cut(s)	108, 165, 258
TasI	AATT	2 cut(s)	131, 161
TatI	WGTACW	3 cut(s)	15, 673, 760
TauI	GCSGC	2 cut(s)	147, 174
TfiI	GAWTC	5 cut(s)	45, 139, 190, 456, 493
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	3 cut(s)	314, 399, 628
TseI	GCWGC	2 cut(s)	313, 818
TspDTI	ATGAA	9 cut(s)	82, 220, 349, 485, 513, 744, 810, 856, 884
TspGWI	ACGGA	3 cut(s)	173, 201, 213
TspMI	CCCGGG	1 cut(s)	643
TspRI	CASTG	3 cut(s)	314, 399, 628
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	863
XspI	CTAG	2 cut(s)	341, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.