MD16G1155400.v1.1

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
12314502 .. 12316781
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1155400.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGAATGCTCAACCCCCTTCTCTCTCTCGTATAAACACCGACTGGTTCTCTCTATCCTCTTCCCCGCTTCGTATTCGTATTTCGTATATAAAATTGTTAACCGGGAGAGGAGGTGGTGGTGGTGGCGGTGGATCGGATCGGAGCAGATCGAATCGGATCGATTCGGATCGGACTGTGATGGCGGAGGACAAGTACAACCTGAAGAACCCGGCGGTGAAGCGGATACTGCAGGAGGTTAAGGAGATGCAATCCAAACCCTCCGACGATTTCATGAGCCTCCCCCTCGAGGAGAACATATTTGACTGGCAATTTGCAATCAGAGGCCCTCGTGATACCGAATTCGAAGGTGGGATTTACCACGGGCGTATCCAGTTGCCGGCGGAGTACCCGTTCAAACCCCCTTCATTCATGTTGCTGACGCCAAATGGTCGCTTCGAAACCCAAACCAAGATTTGCTTGAGCATATCGAATCATCATCCCGAGCATTGGCAGCCATCATGGAGCGTGCGGACCGCTTTAGTTGCACTTATTGCATTCATGCCTACCAACCCAAATGGTGCATTAGGTTCACTGGAATACAAGAAGGAAGAAAGGCGTTCTCTGGCCATCAAATCTCGTGCAGCAGCCCCTAGATATGGCACTGCAGAACGCCAAAAGTTAATGGATGAGATTCATGAATGTATGCTGAACAAGGCACCCCCTGTCCCTCAACTGAGCCCCTCACAGGCTTCGGAAGAGCATCCTTCAAACAAGGAAGGCGATGTTCAGGAGAGTTCTGAAAGCGCTGGAGCCACACCCGCCGAGGAAACTTCTGGGGAAGGGCCTGCAAACCCAACGGCGGGAGACAGGATTGTTGAAGAAGTACAGGAAGCCCCTCTGAATGCTAACCCTGCCCCTGAAGTAGCAAGGGCGTTGAATGGAGCTCCTTCCGTCGGATCAAGTCAGCTGCTACAAAGGCCAGAAGTTAAAGTACAAAAAGCAGCCGACGATCGCTTGTTCACATGGGCTGCTGTTGGACTTACCATTGCAATCATGGTTCTGCTTTTTAAGAAGTTTATGAAATCCAGCGGACACGGTGCTGTTTTCATGGATGAATCTTAG

Protein Analysis

367

Amino Acids

40.18

Weight (kDa)

6.22

Isoelectric Point (pI)

53.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 74 - 185 1.4e-19 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 284
AccB1I GGYRCC 1 cut(s) 694
AclWI GGATC 5 cut(s) 139, 144, 164, 174, 943
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 2 cut(s) 221, 918
AcyI GRCGYC 1 cut(s) 419
AfaI GTAC 4 cut(s) 194, 386, 864, 972
AfeI AGCGCT 1 cut(s) 784
AfiI CCNNNNNNNGG 8 cut(s) 286, 376, 486, 635, 724, 838, 839, 932
AgsI TTSAA 4 cut(s) 394, 747, 857, 916
AloI GAACNNNNNNTCC 2 cut(s) 374, 406
AluBI AGCT 2 cut(s) 923, 946
AluI AGCT 2 cut(s) 923, 946
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 1 cut(s) 837
AlwI GGATC 5 cut(s) 139, 144, 164, 174, 943
Ama87I CYCGRG 2 cut(s) 284, 479
Aor51HI AGCGCT 1 cut(s) 784
AoxI GGCC 4 cut(s) 322, 603, 821, 956
ApeKI GCWGC 6 cut(s) 490, 620, 623, 946, 980, 1007
ApoI RAATTY 1 cut(s) 338
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 3 cut(s) 323, 510, 821
AsuC2I CCSGG 2 cut(s) 103, 209
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 2 cut(s) 342, 435
AvaI CYCGRG 2 cut(s) 284, 479
AvaII GGWCC 1 cut(s) 510
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 1 cut(s) 694
BanII GRGCYC 2 cut(s) 719, 925
BarI GAAGNNNNNNTAC 2 cut(s) 954, 986
BauI CACGAG 2 cut(s) 327, 615
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 6 cut(s) 502, 632, 635, 933, 992, 994
BccI CCATC 3 cut(s) 172, 502, 614
BceAI ACGGC 1 cut(s) 852
BciVI GTATCC 2 cut(s) 216, 377
BcnI CCSGG 2 cut(s) 103, 209
BcoDI GTCTC 1 cut(s) 837
BfaI CTAG 1 cut(s) 630
BfmI CTRYAG 2 cut(s) 227, 642
BfoI RGCGCY 1 cut(s) 786
BfuI GTATCC 2 cut(s) 216, 377
BisI GCNGC 6 cut(s) 491, 621, 624, 947, 981, 1008
BlsI GCNGC 6 cut(s) 492, 622, 625, 948, 982, 1009
Bme1390I CCNGG 2 cut(s) 103, 209
Bme18I GGWCC 1 cut(s) 510
BmeT110I CYCGRG 2 cut(s) 284, 479
BmgT120I GGNCC 3 cut(s) 323, 510, 821
BmiI GGNNCC 2 cut(s) 696, 790
BmrFI CCNGG 2 cut(s) 103, 209
BmsI GCATC 2 cut(s) 234, 748
BpmI CTGGAG 1 cut(s) 807
Bpu14I TTCGAA 2 cut(s) 342, 435
BpuEI CTTGAG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 103, 209
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 358, 801
BsaXI ACNNNNNCTCC 6 cut(s) 97, 127, 176, 206, 374, 404
Bsc4I CCNNNNNNNGG 8 cut(s) 286, 376, 486, 635, 724, 838, 839, 932
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 4 cut(s) 47, 308, 370, 576
Bse3DI GCAATG 1 cut(s) 1023
Bse8I GATNNNNATC 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 358, 801
BseGI GGATG 4 cut(s) 475, 670, 739, 1096
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 8 cut(s) 286, 376, 486, 635, 724, 838, 839, 932
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 4 cut(s) 47, 308, 370, 576
BseRI GAGGAG 2 cut(s) 123, 302
BseXI GCAGC 6 cut(s) 502, 632, 635, 933, 992, 994
BsgI GTGCAG 1 cut(s) 639
Bsh1285I CGRYCG 1 cut(s) 991
BshFI GGCC 4 cut(s) 324, 605, 823, 958
BshNI GGYRCC 1 cut(s) 694
BshVI ATCGAT 1 cut(s) 159
BsiEI CGRYCG 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 2 cut(s) 284, 479
BsiSI CCGG 3 cut(s) 102, 209, 377
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 8 cut(s) 286, 376, 486, 635, 724, 838, 839, 932
BsmAI GTCTC 1 cut(s) 837
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 3 cut(s) 10, 533, 886
BsnI GGCC 4 cut(s) 324, 605, 823, 958
BsoBI CYCGRG 2 cut(s) 284, 479
Bsp119I TTCGAA 2 cut(s) 342, 435
Bsp1286I GDGCHC 2 cut(s) 719, 925
Bsp143I GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
BspANI GGCC 4 cut(s) 324, 605, 823, 958
BspCNI CTCAG 1 cut(s) 705
BspDI ATCGAT 1 cut(s) 159
BspHI TCATGA 2 cut(s) 270, 673
BspLI GGNNCC 2 cut(s) 696, 790
BspMAI CTGCAG 2 cut(s) 231, 646
BspPI GGATC 5 cut(s) 139, 144, 164, 174, 943
BspQI GCTCTTC 1 cut(s) 729
BspT104I TTCGAA 2 cut(s) 342, 435
BspT107I GGYRCC 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 4 cut(s) 47, 308, 370, 576
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 358, 801
BssMI GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
BssNI GRCGYC 1 cut(s) 419
BssSI CACGAG 2 cut(s) 327, 615
Bst2BI CACGAG 2 cut(s) 327, 615
Bst4CI ACNGT 2 cut(s) 175, 1076
Bst6I CTCTTC 2 cut(s) 64, 729
BstACI GRCGYC 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 530
BstBI TTCGAA 2 cut(s) 342, 435
BstC8I GCNNGC 3 cut(s) 378, 506, 825
BstDEI CTNAG 2 cut(s) 713, 1098
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 4 cut(s) 475, 670, 739, 1096
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 1 cut(s) 785
BstKTI GATC 7 cut(s) 134, 139, 149, 159, 169, 938, 991
BstMAI GTCTC 1 cut(s) 837
BstMBI GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
BstMCI CGRYCG 1 cut(s) 991
BstMWI GCNNNNNNNGC 7 cut(s) 226, 490, 521, 530, 797, 890, 955
BstSCI CCNGG 2 cut(s) 101, 207
BstSFI CTRYAG 2 cut(s) 227, 642
BstV1I GCAGC 6 cut(s) 502, 632, 635, 933, 992, 994
Bsu15I ATCGAT 1 cut(s) 159
BsuI GTATCC 2 cut(s) 216, 377
BsuRI GGCC 4 cut(s) 324, 605, 823, 958
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 774
BtsCI GGATG 4 cut(s) 475, 670, 739, 1096
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 569, 639
Cac8I GCNNGC 3 cut(s) 378, 506, 825
CciI TCATGA 2 cut(s) 270, 673
CfoI GCGC 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 323, 510, 821
ClaI ATCGAT 1 cut(s) 159
CpoI CGGWCCG 1 cut(s) 510
CseI GACGC 1 cut(s) 427
Csp6I GTAC 4 cut(s) 193, 385, 863, 971
CspI CGGWCCG 1 cut(s) 510
CviAII CATG 8 cut(s) 271, 409, 498, 538, 674, 1002, 1033, 1087
CviQI GTAC 4 cut(s) 193, 385, 863, 971
DdeI CTNAG 2 cut(s) 713, 1098
DpnI GATC 7 cut(s) 133, 138, 148, 158, 168, 937, 990
DpnII GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 2 cut(s) 64, 729
EarI CTCTTC 2 cut(s) 64, 729
EciI GGCGGA 2 cut(s) 197, 395
Ecl136II GAGCTC 1 cut(s) 923
Eco24I GRGCYC 2 cut(s) 719, 925
Eco47I GGWCC 1 cut(s) 510
Eco47III AGCGCT 1 cut(s) 784
Eco53kI GAGCTC 1 cut(s) 923
Eco57I CTGAAG 2 cut(s) 221, 918
Eco88I CYCGRG 2 cut(s) 284, 479
EcoICRI GAGCTC 1 cut(s) 923
EcoO109I RGGNCCY 2 cut(s) 323, 821
EcoRI GAATTC 1 cut(s) 338
EcoT38I GRGCYC 2 cut(s) 719, 925
FaeI CATG 8 cut(s) 274, 412, 501, 541, 677, 1005, 1036, 1090
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 689
FatI CATG 8 cut(s) 270, 408, 497, 537, 673, 1001, 1032, 1086
FauI CCCGC 3 cut(s) 72, 805, 832
Fnu4HI GCNGC 6 cut(s) 491, 621, 624, 947, 981, 1008
FokI GGATG 3 cut(s) 462, 677, 726
FriOI GRGCYC 2 cut(s) 719, 925
Fsp4HI GCNGC 6 cut(s) 491, 621, 624, 947, 981, 1008
FspBI CTAG 1 cut(s) 630
GlaI GCGC 1 cut(s) 784
GluI GCNGC 6 cut(s) 491, 621, 624, 947, 981, 1008
GsuI CTGGAG 1 cut(s) 807
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 4 cut(s) 324, 605, 823, 958
HapII CCGG 3 cut(s) 102, 209, 377
HgaI GACGC 1 cut(s) 427
HhaI GCGC 1 cut(s) 785
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 8 cut(s) 274, 412, 501, 541, 677, 1005, 1036, 1090
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 5 cut(s) 151, 161, 469, 670, 1094
HpaI GTTAAC 1 cut(s) 99
HpaII CCGG 3 cut(s) 102, 209, 377
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 99, 569, 999
Hpy188III TCNNGA 5 cut(s) 271, 329, 479, 674, 767
Hpy8I GTNNAC 3 cut(s) 99, 569, 999
Hpy99I CGWCG 3 cut(s) 266, 935, 989
HpyAV CCTTC 8 cut(s) 27, 338, 411, 577, 749, 753, 812, 936
HpyCH4III ACNGT 2 cut(s) 175, 1076
HpyF10VI GCNNNNNNNGC 7 cut(s) 226, 490, 521, 530, 797, 890, 955
HpyF3I CTNAG 2 cut(s) 713, 1098
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 8 cut(s) 274, 412, 501, 541, 677, 1005, 1036, 1090
HspAI GCGC 1 cut(s) 783
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 5 cut(s) 141, 501, 788, 920, 928
Lsp1109I GCAGC 6 cut(s) 502, 632, 635, 933, 992, 994
LweI GCATC 2 cut(s) 234, 748
MaeI CTAG 1 cut(s) 630
MalI GATC 7 cut(s) 133, 138, 148, 158, 168, 937, 990
MboI GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
MboII GAAGA 5 cut(s) 51, 214, 599, 746, 869
MhlI GDGCHC 2 cut(s) 719, 925
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 3 cut(s) 92, 308, 338
MluNI TGGCCA 1 cut(s) 605
MmeI TCCRAC 3 cut(s) 285, 913, 994
Mox20I TGGCCA 1 cut(s) 605
MroNI GCCGGC 1 cut(s) 376
MscI TGGCCA 1 cut(s) 605
MseI TTAA 5 cut(s) 98, 237, 659, 966, 1047
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 946, 1068
MspI CCGG 3 cut(s) 102, 209, 377
MspR9I CCNGG 2 cut(s) 103, 209
Mva1269I GAATGC 3 cut(s) 10, 533, 886
MwoI GCNNNNNNNGC 7 cut(s) 226, 490, 521, 530, 797, 890, 955
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 2 cut(s) 103, 209
NdeII GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 8 cut(s) 274, 412, 501, 541, 677, 1005, 1036, 1090
NlaIV GGNNCC 2 cut(s) 696, 790
NmeAIII GCCGAG 1 cut(s) 826
NspV TTCGAA 2 cut(s) 342, 435
PaeR7I CTCGAG 1 cut(s) 284
PagI TCATGA 2 cut(s) 270, 673
PciSI GCTCTTC 1 cut(s) 729
PctI GAATGC 3 cut(s) 10, 533, 886
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 5 cut(s) 151, 161, 469, 670, 1094
PkrI GCNGC 6 cut(s) 492, 622, 625, 948, 982, 1009
Ple19I CGATCG 1 cut(s) 991
Psp124BI GAGCTC 1 cut(s) 925
PspN4I GGNNCC 2 cut(s) 696, 790
PspPI GGNCC 3 cut(s) 323, 510, 821
PspXI VCTCGAGB 1 cut(s) 284
PstI CTGCAG 2 cut(s) 231, 646
PvuI CGATCG 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 946
RsaI GTAC 4 cut(s) 194, 386, 864, 972
RsaNI GTAC 4 cut(s) 193, 385, 863, 971
Rsr2I CGGWCCG 1 cut(s) 510
RsrII CGGWCCG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 925
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 5 cut(s) 98, 237, 659, 966, 1047
SatI GCNGC 6 cut(s) 491, 621, 624, 947, 981, 1008
Sau3AI GATC 7 cut(s) 131, 136, 146, 156, 166, 935, 988
Sau96I GGNCC 3 cut(s) 323, 510, 821
ScrFI CCNGG 2 cut(s) 103, 209
SduI GDGCHC 2 cut(s) 719, 925
SetI ASST 7 cut(s) 115, 201, 237, 349, 568, 925, 948
SfaNI GCATC 2 cut(s) 234, 748
SfcI CTRYAG 2 cut(s) 227, 642
Sfr274I CTCGAG 1 cut(s) 284
SfuI TTCGAA 2 cut(s) 342, 435
SinI GGWCC 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 284, 457
SmoI CTYRAG 2 cut(s) 284, 457
Sse9I AATT 3 cut(s) 92, 308, 338
SspMI CTAG 1 cut(s) 630
SstI GAGCTC 1 cut(s) 925
StyD4I CCNGG 2 cut(s) 101, 207
TaaI ACNGT 2 cut(s) 175, 1076
TaqI TCGA 6 cut(s) 149, 159, 285, 342, 435, 467
TasI AATT 3 cut(s) 92, 308, 338
TatI WGTACW 3 cut(s) 192, 862, 970
TfiI GAWTC 5 cut(s) 151, 161, 469, 670, 1094
Tru1I TTAA 5 cut(s) 98, 237, 659, 966, 1047
Tru9I TTAA 5 cut(s) 98, 237, 659, 966, 1047
TscAI CASTG 2 cut(s) 576, 646
TseI GCWGC 6 cut(s) 490, 620, 623, 946, 980, 1007
TspDTI ATGAA 9 cut(s) 17, 259, 393, 397, 526, 662, 690, 1073, 1075
TspGWI ACGGA 1 cut(s) 919
TspRI CASTG 2 cut(s) 576, 646
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 1030
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.