Prupe.1G119000_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
9319244 .. 9321702
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G119000.2

Sequence Viewer

Length: 924 bp
ATGGCGGAGGACAAGTACAACCTGAAGAACCCAGCGGTGAAGCGGATTCTACAGGAGGTTAAGGAGATGCAATCCAATCCCTCCGACGATTTCATGAGCCTCCCCCTCGAGGAGAACATATTTGACTGGCAATTTGCAATCAGAGGCCCTAGTGAAACCGAATTTGAGGGTGGGATTTATCATGGGCGGATCCAGTTGCCGGCGGAATACCCATTCAAGCCTCCTTCATTTATGTTGTTGACGCCAAATGGTCGCTTCGAAACCCAAACCAAGATTTGCTTAAGCATATCGAATCATCATCCCGAGCACTGGCAGCCATCATGGAGCGTGCGAACTGCTTTAGTTGCACTTATTGCATTTATGCCCACCAACCCAAATGGTGCATTGGGTTCAGTAGAATACAAGAAGGAAGAAAGGCGTTCCCTGGCCATCAAATCTCGTGCAGCAGCCCCAAGATATGGCACTGTTGAACGTCAGAAGCTAATTGATGAGATTCATGAATGTATGCTAAGCAAGGTACCACCTGTTCCTCAACTGAGCCCCTCACAGGATTCCAAAGAGCATCCTTCAAACAGGGAAGGCGAGGTTCAGGTGAGTTCCCAACATGATGGAGCCACACCTGCTGGGGAAGCTGCTGCAGAAGGGTCTCCAAACCCAGCAGTAGGGGACAGGATTGTTGAAGAAGTACAGGAAGCCCCTTTGAATGGTAACCCAGGCCCTGAAGTAGCGAGGACATTGAATGCAGCTCCTTCCGGTGGATCAAGTCAGCTGCTACAAAGGCCAGAAATGAAAGTACAAAAACCGGCCGATGATCGCTTGTTCACATGGGCTGCTGTTGGACTTACCATTGCAATTATGGTTCTTCTATTTAAGAAGTTTATGAAATCTAGCGGACACGGTGCTGTTTTCATGGATGGATCTTAG

Protein Analysis

308

Amino Acids

33.82

Weight (kDa)

5.81

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 628
AbsI CCTCGAGG 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 628
Acc65I GGTACC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 458
AciI CCGC 6 cut(s) 5, 35, 43, 187, 203, 891
AclWI GGATC 3 cut(s) 184, 197, 766
AcoI YGGCCR 2 cut(s) 426, 804
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 44, 741
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 4 cut(s) 17, 519, 687, 795
AfiI CCNNNNNNNGG 8 cut(s) 109, 199, 309, 458, 547, 662, 704, 755
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 6 cut(s) 217, 470, 570, 680, 703, 739
AjnI CCWGG 2 cut(s) 423, 712
AluBI AGCT 4 cut(s) 481, 632, 746, 769
AluI AGCT 4 cut(s) 481, 632, 746, 769
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 651
AlwI GGATC 3 cut(s) 184, 197, 766
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 2 cut(s) 107, 302
AoxI GGCC 5 cut(s) 145, 426, 715, 779, 804
ApeKI GCWGC 8 cut(s) 313, 443, 446, 632, 635, 743, 769, 830
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
Asp718I GGTACC 1 cut(s) 517
AspS9I GGNCC 2 cut(s) 146, 716
AsuHPI GGTGA 2 cut(s) 49, 604
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 2 cut(s) 107, 302
BalI TGGCCA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 542
BauI CACGAG 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 8 cut(s) 325, 455, 458, 619, 622, 755, 756, 817
BccI CCATC 4 cut(s) 325, 437, 602, 908
BciT130I CCWGG 2 cut(s) 425, 714
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 2 cut(s) 150, 888
BfmI CTRYAG 2 cut(s) 50, 636
BfrI CTTAAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 628
BisI GCNGC 8 cut(s) 314, 444, 447, 633, 636, 744, 770, 831
BlpI GCTNAGC 1 cut(s) 509
BlsI GCNGC 8 cut(s) 315, 445, 448, 634, 637, 745, 771, 832
Bme1390I CCNGG 2 cut(s) 425, 714
BmeT110I CYCGRG 2 cut(s) 107, 302
BmgT120I GGNCC 2 cut(s) 146, 716
BmiI GGNNCC 3 cut(s) 191, 519, 613
BmrFI CCNGG 2 cut(s) 425, 714
BmsI GCATC 2 cut(s) 57, 571
Bpu1102I GCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 423, 712
BsaWI WCCGGW 1 cut(s) 752
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 8 cut(s) 109, 199, 309, 458, 547, 662, 704, 755
Bse118I RCCGGY 2 cut(s) 199, 802
Bse1I ACTGG 3 cut(s) 131, 193, 314
Bse3DI GCAATG 1 cut(s) 846
BseBI CCWGG 2 cut(s) 425, 714
BseDI CCNNGG 2 cut(s) 423, 712
BseGI GGATG 3 cut(s) 298, 562, 919
BseLI CCNNNNNNNGG 8 cut(s) 109, 199, 309, 458, 547, 662, 704, 755
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 3 cut(s) 131, 193, 314
BseRI GAGGAG 1 cut(s) 125
BseX3I CGGCCG 1 cut(s) 804
BseXI GCAGC 8 cut(s) 325, 455, 458, 619, 622, 755, 756, 817
BseYI CCCAGC 3 cut(s) 31, 623, 655
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 5 cut(s) 147, 428, 717, 781, 806
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 2 cut(s) 107, 302
BsiSI CCGG 3 cut(s) 200, 753, 803
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 8 cut(s) 109, 199, 309, 458, 547, 662, 704, 755
BsmAI GTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 5 cut(s) 147, 428, 717, 781, 806
Bso31I GGTCTC 1 cut(s) 651
BsoBI CYCGRG 2 cut(s) 107, 302
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 309, 542
Bsp143I GATC 4 cut(s) 189, 758, 811, 917
Bsp1720I GCTNAGC 1 cut(s) 509
BspACI CCGC 6 cut(s) 5, 35, 43, 187, 203, 891
BspANI GGCC 5 cut(s) 147, 428, 717, 781, 806
BspCNI CTCAG 1 cut(s) 528
BspHI TCATGA 2 cut(s) 93, 496
BspLI GGNNCC 3 cut(s) 191, 519, 613
BspMAI CTGCAG 1 cut(s) 640
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 3 cut(s) 184, 197, 766
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 517
BspTI CTTAAG 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 846
BsrFI RCCGGY 2 cut(s) 199, 802
BsrI ACTGG 3 cut(s) 131, 193, 314
BssAI RCCGGY 2 cut(s) 199, 802
BssECI CCNNGG 2 cut(s) 423, 712
BssMI GATC 4 cut(s) 189, 758, 811, 917
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 425, 714
Bst4CI ACNGT 2 cut(s) 466, 899
BstACI GRCGYC 1 cut(s) 242
BstAFI CTTAAG 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 201, 329
BstDEI CTNAG 3 cut(s) 509, 536, 921
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 3 cut(s) 298, 562, 919
BstKTI GATC 4 cut(s) 192, 761, 814, 920
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 4 cut(s) 189, 758, 811, 917
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 6 cut(s) 313, 344, 353, 620, 629, 778
BstNI CCWGG 2 cut(s) 425, 714
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 2 cut(s) 423, 712
BstSFI CTRYAG 2 cut(s) 50, 636
BstV1I GCAGC 8 cut(s) 325, 455, 458, 619, 622, 755, 756, 817
BstX2I RGATCY 2 cut(s) 189, 917
BstXI CCANNNNNNTGG 1 cut(s) 608
BstYI RGATCY 2 cut(s) 189, 917
BstZI CGGCCG 1 cut(s) 804
BsuRI GGCC 5 cut(s) 147, 428, 717, 781, 806
BtsCI GGATG 3 cut(s) 298, 562, 919
BtsIMutI CAGTG 2 cut(s) 307, 462
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 201, 329
CaiI CAGNNNCTG 1 cut(s) 719
CciI TCATGA 2 cut(s) 93, 496
Cfr10I RCCGGY 2 cut(s) 199, 802
Cfr13I GGNCC 2 cut(s) 146, 716
CseI GACGC 1 cut(s) 250
Csp6I GTAC 4 cut(s) 16, 518, 686, 794
CviAII CATG 7 cut(s) 94, 182, 321, 497, 605, 825, 910
CviQI GTAC 4 cut(s) 16, 518, 686, 794
DdeI CTNAG 3 cut(s) 509, 536, 921
DpnI GATC 4 cut(s) 191, 760, 813, 919
DpnII GATC 4 cut(s) 189, 758, 811, 917
EaeI YGGCCR 2 cut(s) 426, 804
EagI CGGCCG 1 cut(s) 804
EciI GGCGGA 3 cut(s) 20, 202, 218
EclXI CGGCCG 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 651
Eco52I CGGCCG 1 cut(s) 804
Eco57I CTGAAG 2 cut(s) 44, 741
Eco88I CYCGRG 2 cut(s) 107, 302
Eco91I GGTNACC 1 cut(s) 707
EcoO109I RGGNCCY 2 cut(s) 146, 716
EcoO65I GGTNACC 1 cut(s) 707
EcoRII CCWGG 2 cut(s) 423, 712
EcoT38I GRGCYC 1 cut(s) 542
FaeI CATG 7 cut(s) 97, 185, 324, 500, 608, 828, 913
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 680
FatI CATG 7 cut(s) 93, 181, 320, 496, 604, 824, 909
Fnu4HI GCNGC 8 cut(s) 314, 444, 447, 633, 636, 744, 770, 831
FokI GGATG 2 cut(s) 285, 549
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 8 cut(s) 314, 444, 447, 633, 636, 744, 770, 831
FspBI CTAG 2 cut(s) 150, 888
GluI GCNGC 8 cut(s) 314, 444, 447, 633, 636, 744, 770, 831
GsaI CCCAGC 3 cut(s) 35, 627, 659
HaeIII GGCC 5 cut(s) 147, 428, 717, 781, 806
HapII CCGG 3 cut(s) 200, 753, 803
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 7 cut(s) 97, 185, 324, 500, 608, 828, 913
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HinfI GANTC 4 cut(s) 46, 292, 493, 551
HpaII CCGG 3 cut(s) 200, 753, 803
HphI GGTGA 2 cut(s) 49, 604
Hpy166II GTNNAC 2 cut(s) 240, 822
Hpy188I TCNGA 3 cut(s) 85, 143, 477
Hpy188III TCNNGA 3 cut(s) 94, 302, 497
Hpy8I GTNNAC 2 cut(s) 240, 822
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 6 cut(s) 234, 400, 572, 576, 635, 759
HpyCH4III ACNGT 2 cut(s) 466, 899
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 9 cut(s) 70, 137, 347, 356, 383, 443, 638, 743, 851
HpyF10VI GCNNNNNNNGC 6 cut(s) 313, 344, 353, 620, 629, 778
HpyF3I CTNAG 3 cut(s) 509, 536, 921
HpySE526I ACGT 1 cut(s) 472
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 7 cut(s) 97, 185, 324, 500, 608, 828, 913
KpnI GGTACC 1 cut(s) 521
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
Kzo9I GATC 4 cut(s) 189, 758, 811, 917
LmnI GCTCC 3 cut(s) 324, 611, 751
Lsp1109I GCAGC 8 cut(s) 325, 455, 458, 619, 622, 755, 756, 817
LweI GCATC 2 cut(s) 57, 571
MaeI CTAG 2 cut(s) 150, 888
MaeII ACGT 1 cut(s) 472
MaeIII GTNAC 1 cut(s) 707
MalI GATC 4 cut(s) 191, 760, 813, 919
MboI GATC 4 cut(s) 189, 758, 811, 917
MboII GAAGA 4 cut(s) 37, 422, 692, 854
MflI RGATCY 2 cut(s) 189, 917
MhlI GDGCHC 2 cut(s) 309, 542
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 4 cut(s) 131, 161, 483, 852
MluNI TGGCCA 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 108, 817
Mox20I TGGCCA 1 cut(s) 428
MroNI GCCGGC 1 cut(s) 199
MscI TGGCCA 1 cut(s) 428
MseI TTAA 3 cut(s) 60, 281, 870
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 2 cut(s) 35, 769
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 3 cut(s) 200, 753, 803
MspR9I CCNGG 2 cut(s) 425, 714
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 2 cut(s) 425, 714
MwoI GCNNNNNNNGC 6 cut(s) 313, 344, 353, 620, 629, 778
NaeI GCCGGC 1 cut(s) 201
NdeII GATC 4 cut(s) 189, 758, 811, 917
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 7 cut(s) 97, 185, 324, 500, 608, 828, 913
NlaIV GGNNCC 3 cut(s) 191, 519, 613
NspV TTCGAA 1 cut(s) 258
PaeR7I CTCGAG 1 cut(s) 107
PagI TCATGA 2 cut(s) 93, 496
PaqCI CACCTGC 1 cut(s) 628
PctI GAATGC 1 cut(s) 745
PdiI GCCGGC 1 cut(s) 201
PfeI GAWTC 4 cut(s) 46, 292, 493, 551
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 8 cut(s) 315, 445, 448, 634, 637, 745, 771, 832
Psp6I CCWGG 2 cut(s) 423, 712
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 3 cut(s) 31, 623, 655
PspGI CCWGG 2 cut(s) 423, 712
PspN4I GGNNCC 3 cut(s) 191, 519, 613
PspPI GGNCC 2 cut(s) 146, 716
PspXI VCTCGAGB 1 cut(s) 107
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PstI CTGCAG 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 2 cut(s) 189, 917
PvuII CAGCTG 1 cut(s) 769
RsaI GTAC 4 cut(s) 17, 519, 687, 795
RsaNI GTAC 4 cut(s) 16, 518, 686, 794
SaqAI TTAA 3 cut(s) 60, 281, 870
SatI GCNGC 8 cut(s) 314, 444, 447, 633, 636, 744, 770, 831
Sau3AI GATC 4 cut(s) 189, 758, 811, 917
Sau96I GGNCC 2 cut(s) 146, 716
ScrFI CCNGG 2 cut(s) 425, 714
SduI GDGCHC 2 cut(s) 309, 542
SfaNI GCATC 2 cut(s) 57, 571
SfcI CTRYAG 2 cut(s) 50, 636
Sfr274I CTCGAG 1 cut(s) 107
SfuI TTCGAA 1 cut(s) 258
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 107, 280
SmoI CTYRAG 2 cut(s) 107, 280
Sse9I AATT 4 cut(s) 131, 161, 483, 852
SsiI CCGC 6 cut(s) 5, 35, 43, 187, 203, 891
SspMI CTAG 2 cut(s) 150, 888
StyD4I CCNGG 2 cut(s) 423, 712
TaaI ACNGT 2 cut(s) 466, 899
TaiI ACGT 1 cut(s) 475
TaqI TCGA 3 cut(s) 108, 258, 290
TasI AATT 4 cut(s) 131, 161, 483, 852
TatI WGTACW 3 cut(s) 15, 685, 793
TfiI GAWTC 4 cut(s) 46, 292, 493, 551
Tru1I TTAA 3 cut(s) 60, 281, 870
Tru9I TTAA 3 cut(s) 60, 281, 870
TscAI CASTG 2 cut(s) 314, 469
TseI GCWGC 8 cut(s) 313, 443, 446, 632, 635, 743, 769, 830
TspDTI ATGAA 7 cut(s) 82, 216, 485, 513, 803, 896, 898
TspRI CASTG 2 cut(s) 314, 469
Van91I CCANNNNNTGG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 280
XapI RAATTY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 107
XspI CTAG 2 cut(s) 150, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.