MD13G1155700.v1.1

Belongs to the ubiquitin-conjugating enzyme family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
12125929 .. 12128506
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1155700.v1.1.491

Sequence Viewer

Length: 924 bp
ATGGCGGAGGACAAGTACAACCGGAAGAACCCGGCGGTGAAGCGGATTTTGCAGGAGGTTAAGGAGATGCAATCCAAACCCTCCGACGATTTCATGAGCCTCCCCCTCGAGGAGAACATATTTGACTGGCAATTTGCAATCAGAGGCCCTAGGGACACCGAATTCGAAGGTGGGATTTACCACGGGCGGATTCAGTTGCCGGCGGAGTACCCGTTCAAACCCCCTTCATTCATGTTGCTGACGCCAAATGGTCGCTTCGAAACCCAAACCAAGATTTGCTTGAGCATATCGAATCATCATCCCGAGCACTGGCAACCGTCATGGAGCGTGCGGACTGCTTTAGTTGCACTTATTGCTTTCATGCCTACCAACCCAAATGGTGCATTAGGTTCACTGGAATACAAGAAGGAAGAAAGGCGTGCCCTGGCCATCAAATCTCGTGCAGCAGCCCCAAGATATGGCACTGATGAACGCCAGAAGTTAATGGACGAGATTCATGAATATATGCTGAGCAAGGCACCCCCTGTTCCTCAACTGAGCCCCTCACAGGCTTCGGAAGAGCATCCTTCAAACAAGGAAGGCAATGTTCAGGAGAGTTCCGCAAGCGCTGGATCCACACCCGCGGAGGAAACTGCTGGGGAAGGGCCTGCAAACCCAACAGCAGGAGACAGGATTGTCGAAGAAGTTCAGGAAGCCCCTCTGAATGCTAACCCTGCCCCTGTAGCGGCAAGGGCGGTGGACGAAGCTCCTTCCACTGGATCAAGTCAGCTGCTACAAAGGCCAGAAGTTAAAGTACACAAACCAGCTGACGATCGCTTGTTCACATGGGCTGCTGTTGGACTTACCATCGCAATCATGGTTCTTCTATTTAAGAAGTTTATGAAATCCGGCGGACACGGTGCTGTTTTCATGGACGGATCGTAG

Protein Analysis

308

Amino Acids

33.86

Weight (kDa)

5.82

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 15 - 126 9.7e-20 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AbsI CCTCGAGG 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 458
AccII CGCG 1 cut(s) 623
AclWI GGATC 3 cut(s) 606, 619, 766
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 3 cut(s) 17, 209, 795
AfeI AGCGCT 1 cut(s) 607
AfiI CCNNNNNNNGG 7 cut(s) 109, 309, 458, 547, 662, 724, 755
AgsI TTSAA 2 cut(s) 217, 570
AjnI CCWGG 1 cut(s) 423
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 3 cut(s) 746, 769, 806
AluI AGCT 3 cut(s) 746, 769, 806
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 3 cut(s) 606, 619, 766
Ama87I CYCGRG 2 cut(s) 107, 302
Aor51HI AGCGCT 1 cut(s) 607
AoxI GGCC 4 cut(s) 145, 426, 644, 779
ApeKI GCWGC 4 cut(s) 443, 446, 769, 830
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 4 cut(s) 116, 146, 148, 178
Asp700I GAANNNNTTC 1 cut(s) 684
AspA2I CCTAGG 1 cut(s) 149
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 146, 644
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 2 cut(s) 165, 258
AvaI CYCGRG 2 cut(s) 107, 302
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 1 cut(s) 428
BamHI GGATCC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 777, 809
BauI CACGAG 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 4 cut(s) 455, 458, 756, 817
BccI CCATC 2 cut(s) 437, 854
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 609
BisI GCNGC 5 cut(s) 444, 447, 726, 770, 831
BlnI CCTAGG 1 cut(s) 149
BlpI GCTNAGC 1 cut(s) 509
BlsI GCNGC 5 cut(s) 445, 448, 727, 771, 832
Bme1390I CCNGG 2 cut(s) 32, 425
BmeT110I CYCGRG 2 cut(s) 107, 302
BmgT120I GGNCC 2 cut(s) 146, 644
BmiI GGNNCC 2 cut(s) 519, 613
BmrFI CCNGG 2 cut(s) 32, 425
BmsI GCATC 2 cut(s) 57, 571
Bpu1102I GCTNAGC 1 cut(s) 509
Bpu14I TTCGAA 2 cut(s) 165, 258
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 149, 181, 423, 621
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 3 cut(s) 29, 197, 227
Bsc4I CCNNNNNNNGG 7 cut(s) 109, 309, 458, 547, 662, 724, 755
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 4 cut(s) 131, 314, 399, 760
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 4 cut(s) 149, 181, 423, 621
BseGI GGATG 2 cut(s) 298, 562
BseLI CCNNNNNNNGG 7 cut(s) 109, 309, 458, 547, 662, 724, 755
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 2 cut(s) 500, 527
BseNI ACTGG 4 cut(s) 131, 314, 399, 760
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 4 cut(s) 455, 458, 756, 817
BseYI CCCAGC 1 cut(s) 635
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 623
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 4 cut(s) 147, 428, 646, 781
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 2 cut(s) 107, 302
BsiSI CCGG 4 cut(s) 22, 32, 200, 888
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 7 cut(s) 109, 309, 458, 547, 662, 724, 755
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 4 cut(s) 147, 428, 646, 781
BsoBI CYCGRG 2 cut(s) 107, 302
Bsp119I TTCGAA 2 cut(s) 165, 258
Bsp1286I GDGCHC 3 cut(s) 309, 424, 542
Bsp143I GATC 4 cut(s) 611, 758, 811, 917
Bsp1720I GCTNAGC 1 cut(s) 509
BspANI GGCC 4 cut(s) 147, 428, 646, 781
BspCNI CTCAG 2 cut(s) 501, 528
BspFNI CGCG 1 cut(s) 623
BspHI TCATGA 2 cut(s) 93, 496
BspLI GGNNCC 2 cut(s) 519, 613
BspPI GGATC 3 cut(s) 606, 619, 766
BspQI GCTCTTC 1 cut(s) 552
BspT104I TTCGAA 2 cut(s) 165, 258
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 4 cut(s) 131, 314, 399, 760
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 4 cut(s) 149, 181, 423, 621
BssMI GATC 4 cut(s) 611, 758, 811, 917
BssNI GRCGYC 1 cut(s) 242
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 2 cut(s) 318, 899
Bst6I CTCTTC 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 353
BstBI TTCGAA 2 cut(s) 165, 258
BstC8I GCNNGC 5 cut(s) 201, 329, 420, 604, 648
BstDEI CTNAG 2 cut(s) 509, 536
BstDSI CCRYGG 2 cut(s) 181, 621
BstF5I GGATG 2 cut(s) 298, 562
BstFNI CGCG 1 cut(s) 623
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 4 cut(s) 614, 761, 814, 920
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 4 cut(s) 611, 758, 811, 917
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 7 cut(s) 49, 344, 353, 713, 722, 731, 778
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 30, 423
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 4 cut(s) 455, 458, 756, 817
BstX2I RGATCY 1 cut(s) 611
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 4 cut(s) 147, 428, 646, 781
BtgI CCRYGG 2 cut(s) 181, 621
BtgZI GCGATG 1 cut(s) 832
BtsCI GGATG 2 cut(s) 298, 562
BtsIMutI CAGTG 4 cut(s) 307, 392, 462, 753
Cac8I GCNNGC 5 cut(s) 201, 329, 420, 604, 648
CciI TCATGA 2 cut(s) 93, 496
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 146, 644
Cfr42I CCGCGG 1 cut(s) 624
CseI GACGC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 16, 208, 794
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviAII CATG 8 cut(s) 94, 232, 321, 361, 497, 825, 856, 910
CviQI GTAC 3 cut(s) 16, 208, 794
DdeI CTNAG 2 cut(s) 509, 536
DpnI GATC 4 cut(s) 613, 760, 813, 919
DpnII GATC 4 cut(s) 611, 758, 811, 917
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
EciI GGCGGA 4 cut(s) 20, 202, 218, 906
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 542
Eco47III AGCGCT 1 cut(s) 607
Eco88I CYCGRG 2 cut(s) 107, 302
EcoO109I RGGNCCY 2 cut(s) 146, 644
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 8 cut(s) 97, 235, 324, 364, 500, 828, 859, 913
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 167
FatI CATG 8 cut(s) 93, 231, 320, 360, 496, 824, 855, 909
FauI CCCGC 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 444, 447, 726, 770, 831
FokI GGATG 2 cut(s) 285, 549
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 5 cut(s) 444, 447, 726, 770, 831
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 607
GluI GCNGC 5 cut(s) 444, 447, 726, 770, 831
GsaI CCCAGC 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 4 cut(s) 147, 428, 646, 781
HapII CCGG 4 cut(s) 22, 32, 200, 888
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 8 cut(s) 97, 235, 324, 364, 500, 828, 859, 913
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HinfI GANTC 3 cut(s) 190, 292, 493
HpaII CCGG 4 cut(s) 22, 32, 200, 888
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 4 cut(s) 392, 739, 796, 822
Hpy188I TCNGA 4 cut(s) 85, 143, 556, 702
Hpy188III TCNNGA 5 cut(s) 94, 302, 497, 590, 689
Hpy8I GTNNAC 4 cut(s) 392, 739, 796, 822
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 7 cut(s) 161, 234, 400, 572, 576, 635, 759
HpyCH4III ACNGT 2 cut(s) 318, 899
HpyCH4V TGCA 7 cut(s) 52, 70, 137, 347, 383, 443, 650
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 344, 353, 713, 722, 731, 778
HpyF3I CTNAG 2 cut(s) 509, 536
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 8 cut(s) 97, 235, 324, 364, 500, 828, 859, 913
HspAI GCGC 1 cut(s) 606
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
KspI CCGCGG 1 cut(s) 624
Kzo9I GATC 4 cut(s) 611, 758, 811, 917
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 2 cut(s) 324, 751
Lsp1109I GCAGC 4 cut(s) 455, 458, 756, 817
LweI GCATC 2 cut(s) 57, 571
MaeI CTAG 1 cut(s) 150
MalI GATC 4 cut(s) 613, 760, 813, 919
MboI GATC 4 cut(s) 611, 758, 811, 917
MboII GAAGA 5 cut(s) 37, 422, 569, 692, 854
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 3 cut(s) 309, 424, 542
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 2 cut(s) 131, 161
MluNI TGGCCA 1 cut(s) 428
MmeI TCCRAC 2 cut(s) 108, 817
Mox20I TGGCCA 1 cut(s) 428
MroNI GCCGGC 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 684
MscI TGGCCA 1 cut(s) 428
MseI TTAA 4 cut(s) 60, 482, 789, 870
Msp20I TGGCCA 1 cut(s) 428
MspA1I CMGCKG 3 cut(s) 623, 769, 806
MspI CCGG 4 cut(s) 22, 32, 200, 888
MspR9I CCNGG 2 cut(s) 32, 425
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 7 cut(s) 49, 344, 353, 713, 722, 731, 778
NaeI GCCGGC 1 cut(s) 201
NciI CCSGG 1 cut(s) 32
NdeII GATC 4 cut(s) 611, 758, 811, 917
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 8 cut(s) 97, 235, 324, 364, 500, 828, 859, 913
NlaIV GGNNCC 2 cut(s) 519, 613
NspV TTCGAA 2 cut(s) 165, 258
PaeR7I CTCGAG 1 cut(s) 107
PagI TCATGA 2 cut(s) 93, 496
PciSI GCTCTTC 1 cut(s) 552
PctI GAATGC 1 cut(s) 709
PdiI GCCGGC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 684
PfeI GAWTC 3 cut(s) 190, 292, 493
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 5 cut(s) 445, 448, 727, 771, 832
Ple19I CGATCG 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 519, 613
PspPI GGNCC 2 cut(s) 146, 644
PspXI VCTCGAGB 1 cut(s) 107
PsuI RGATCY 1 cut(s) 611
PvuI CGATCG 1 cut(s) 814
PvuII CAGCTG 2 cut(s) 769, 806
RsaI GTAC 3 cut(s) 17, 209, 795
RsaNI GTAC 3 cut(s) 16, 208, 794
SacII CCGCGG 1 cut(s) 624
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 60, 482, 789, 870
SatI GCNGC 5 cut(s) 444, 447, 726, 770, 831
Sau3AI GATC 4 cut(s) 611, 758, 811, 917
Sau96I GGNCC 2 cut(s) 146, 644
ScrFI CCNGG 2 cut(s) 32, 425
SduI GDGCHC 3 cut(s) 309, 424, 542
SetI ASST 6 cut(s) 60, 172, 391, 748, 771, 808
SfaNI GCATC 2 cut(s) 57, 571
SfcI CTRYAG 1 cut(s) 720
Sfr274I CTCGAG 1 cut(s) 107
Sfr303I CCGCGG 1 cut(s) 624
SfuI TTCGAA 2 cut(s) 165, 258
SgrBI CCGCGG 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 107, 280
SmoI CTYRAG 2 cut(s) 107, 280
Sse9I AATT 2 cut(s) 131, 161
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 30, 423
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 318, 899
TaqI TCGA 5 cut(s) 108, 165, 258, 290, 678
TasI AATT 2 cut(s) 131, 161
TatI WGTACW 2 cut(s) 15, 793
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 3 cut(s) 190, 292, 493
Tru1I TTAA 4 cut(s) 60, 482, 789, 870
Tru9I TTAA 4 cut(s) 60, 482, 789, 870
TscAI CASTG 4 cut(s) 314, 399, 469, 760
TseI GCWGC 4 cut(s) 443, 446, 769, 830
TspDTI ATGAA 9 cut(s) 82, 216, 220, 349, 483, 485, 513, 896, 898
TspRI CASTG 4 cut(s) 314, 399, 469, 760
Van91I CCANNNNNTGG 1 cut(s) 458
XapI RAATTY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 853
XhoI CTCGAG 1 cut(s) 107
XmaJI CCTAGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 684
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.