AT3G17170

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013271
Physical Location & Seq
Reverse (-)
5853059 .. 5854906
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17170.1

Sequence Viewer

Length: 945 bp
ATGGAGTCACTCCTGCACGCGTCTTCGTCTCTGGTGTCTCTGAGACCCAGAATCGACGGTAGAGATTCGTTCATCAACCCGTCACGCGTGTGCCTTAATCCTAGTCTCGGCCGCAGAGGATCTAAACCTCTTCCGTTGGTCGCGGCGGCGAAGAAGAAGAAAAGCAAGAAAGATGACAATCATAACTTTTCAGCTAGACCTGACGAAGCCACTGGTCCTTTTCCTGAATCCATTCTTCTCAAAGAGAAGAAGATTGATGAAGAAGGTGATCTTCTTCCCGAGTTTGCTGATGCTGAAGAAAAGGAGCTATATCAGTTTCTGGATCTTCAGCTTCAGAGTGACTTGAATGAAGAAAGGATGAGGCACTATGAGGTGGTTTACTTGATTCATGAAAAACATGCTGAGGAGGTTGAAAGCATTAACCAGAAAGTACAAGATTACCTGAAGGAGAAGAAGGGGAAAGTTTGGAGGTTTAGTGATTGGGGAATGCGTAGACTGGCTTACAAAATACAGAAGGCAGAGAATGCGCACTATATACTGATGAACTTTGAGATAGAGGCAAAATACTTGAACGAATTCAAGGGATTGTTAGATAGTGATGAGAGGGTGATTAGGCATCTTGTGATGAAACGTGATGAGGCCATAACCGAAGACTGTCCTCCACCTCCTGAGTTTCACTCTGTCCGCGCAGGTGATGAATATTATGACGATGATGAAGAGGAAGAGATTGAAGAAGATGAAGATGAAGGTGAGGGTGAAGATGAAGAAGATGCTGATAATATAGAGTACGAAGTAGATGATGATGGTAATGTCGTTATGGTGTTGTACGGAGATGAAGAAGAAGGAGAAGAAGAAGAAGATGGAGCTAGTGAACAAGAAGAAGGACAGGACAAGTCAACTAATGGTAGAAGAGAAACCCGGAGAACAGTTAACGTAGGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

314

Amino Acids

36.28

Weight (kDa)

4.51

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 122 - 210 4.2e-25 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 680
Acc16I TGCGCA 1 cut(s) 528
Acc36I ACCTGC 1 cut(s) 680
AccI GTMKAC 1 cut(s) 493
AccII CGCG 4 cut(s) 20, 87, 143, 687
AciI CCGC 4 cut(s) 112, 143, 146, 685
AclWI GGATC 2 cut(s) 127, 330
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 4 cut(s) 311, 315, 317, 464
AfaI GTAC 3 cut(s) 432, 788, 827
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 2 cut(s) 18, 85
AgsI TTSAA 5 cut(s) 346, 413, 571, 580, 731
AleI CACNNNNGTG 1 cut(s) 88
AluBI AGCT 4 cut(s) 194, 307, 331, 866
AluI AGCT 4 cut(s) 194, 307, 331, 866
Alw26I GTCTC 4 cut(s) 33, 37, 42, 110
AlwI GGATC 2 cut(s) 127, 330
AlwNI CAGNNNCTG 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 109, 639
ApoI RAATTY 1 cut(s) 575
Asp700I GAANNNNTTC 2 cut(s) 231, 575
AspLEI GCGC 2 cut(s) 529, 689
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 919
AsuHPI GGTGA 5 cut(s) 278, 619, 704, 761, 767
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 15, 657
BbvCI CCTCAGC 1 cut(s) 402
BccI CCATC 2 cut(s) 797, 854
BcnI CCSGG 1 cut(s) 919
BcoDI GTCTC 4 cut(s) 33, 37, 42, 110
BfaI CTAG 3 cut(s) 102, 195, 867
BfuAI ACCTGC 1 cut(s) 680
BisI GCNGC 3 cut(s) 112, 144, 147
BlsI GCNGC 3 cut(s) 113, 145, 148
Bme1390I CCNGG 1 cut(s) 919
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 919
BmsI GCATC 3 cut(s) 280, 625, 760
BpiI GAAGAC 2 cut(s) 15, 657
BplI GAGNNNNNCTC 2 cut(s) 662, 694
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 919
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 217, 501
Bse8I GATNNNNATC 1 cut(s) 177
BseGI GGATG 1 cut(s) 363
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 32, 393, 660
BseNI ACTGG 2 cut(s) 217, 501
BseRI GAGGAG 1 cut(s) 419
BseX3I CGGCCG 1 cut(s) 109
Bsh1236I CGCG 4 cut(s) 20, 87, 143, 687
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 111, 641
BsiEI CGRYCG 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 919
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 4 cut(s) 33, 37, 42, 110
BsmBI CGTCTC 1 cut(s) 33
BsmI GAATGC 2 cut(s) 492, 529
BsnI GGCC 2 cut(s) 111, 641
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 3 cut(s) 119, 268, 322
BspACI CCGC 4 cut(s) 112, 143, 146, 685
BspANI GGCC 2 cut(s) 111, 641
BspCNI CTCAG 3 cut(s) 33, 394, 661
BspFNI CGCG 4 cut(s) 20, 87, 143, 687
BspHI TCATGA 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 2 cut(s) 127, 330
BspTNI GGTCTC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 217, 501
BssMI GATC 3 cut(s) 119, 268, 322
Bst4CI ACNGT 3 cut(s) 59, 656, 928
Bst6I CTCTTC 4 cut(s) 135, 711, 717, 904
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 3 cut(s) 41, 402, 669
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 4 cut(s) 20, 87, 143, 687
BstHHI GCGC 2 cut(s) 529, 689
BstKTI GATC 3 cut(s) 122, 271, 325
BstMAI GTCTC 4 cut(s) 33, 37, 42, 110
BstMBI GATC 3 cut(s) 119, 268, 322
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 917
BstUI CGCG 4 cut(s) 20, 87, 143, 687
BstV2I GAAGAC 2 cut(s) 15, 657
BstX2I RGATCY 2 cut(s) 119, 322
BstYI RGATCY 2 cut(s) 119, 322
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 2 cut(s) 111, 641
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 388
CfoI GCGC 2 cut(s) 529, 689
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 431, 787, 826
CviAII CATG 2 cut(s) 389, 398
CviJI RGCY 8 cut(s) 111, 194, 209, 307, 331, 500, 641, 866
CviKI_1 RGCY 8 cut(s) 111, 194, 209, 307, 331, 500, 641, 866
CviQI GTAC 3 cut(s) 431, 787, 826
DdeI CTNAG 3 cut(s) 41, 402, 669
DpnI GATC 3 cut(s) 121, 270, 324
DpnII GATC 3 cut(s) 119, 268, 322
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 4 cut(s) 135, 711, 717, 904
EarI CTCTTC 4 cut(s) 135, 711, 717, 904
EclXI CGGCCG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 215
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 4 cut(s) 311, 315, 317, 464
Eco88I CYCGRG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 575
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 2 cut(s) 392, 401
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 2 cut(s) 388, 397
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 112, 144, 147
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 3 cut(s) 112, 144, 147
FspAI RTGCGCAY 1 cut(s) 528
FspBI CTAG 3 cut(s) 102, 195, 867
FspI TGCGCA 1 cut(s) 528
GlaI GCGC 2 cut(s) 528, 688
GluI GCNGC 3 cut(s) 112, 144, 147
HaeIII GGCC 2 cut(s) 111, 641
HapII CCGG 1 cut(s) 919
HgaI GACGC 1 cut(s) 9
HhaI GCGC 2 cut(s) 529, 689
Hin1II CATG 2 cut(s) 392, 401
Hin6I GCGC 2 cut(s) 527, 687
HinP1I GCGC 2 cut(s) 527, 687
HincII GTYRAC 2 cut(s) 897, 931
HindII GTYRAC 2 cut(s) 897, 931
HinfI GANTC 5 cut(s) 5, 51, 65, 227, 385
HpaI GTTAAC 1 cut(s) 931
HpaII CCGG 1 cut(s) 919
HphI GGTGA 5 cut(s) 278, 619, 704, 761, 767
Hpy166II GTNNAC 5 cut(s) 379, 494, 872, 897, 931
Hpy188I TCNGA 2 cut(s) 42, 336
Hpy188III TCNNGA 5 cut(s) 224, 278, 320, 389, 668
Hpy8I GTNNAC 5 cut(s) 379, 494, 872, 897, 931
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 7 cut(s) 257, 439, 448, 508, 740, 836, 875
HpyCH4III ACNGT 3 cut(s) 59, 656, 928
HpyCH4IV ACGT 2 cut(s) 631, 933
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 3 cut(s) 41, 402, 669
HpySE526I ACGT 2 cut(s) 631, 933
Hsp92II CATG 2 cut(s) 392, 401
HspAI GCGC 2 cut(s) 527, 687
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 3 cut(s) 119, 268, 322
LmnI GCTCC 2 cut(s) 304, 863
LweI GCATC 3 cut(s) 280, 625, 760
MaeI CTAG 3 cut(s) 102, 195, 867
MaeII ACGT 2 cut(s) 631, 933
MaeIII GTNAC 3 cut(s) 6, 81, 338
MalI GATC 3 cut(s) 121, 270, 324
MboI GATC 3 cut(s) 119, 268, 322
MflI RGATCY 2 cut(s) 119, 322
MluCI AATT 1 cut(s) 575
MluI ACGCGT 2 cut(s) 18, 85
MlyI GAGTC 1 cut(s) 14
MroXI GAANNNNTTC 2 cut(s) 231, 575
MseI TTAA 3 cut(s) 96, 420, 930
MslI CAYNNNNRTG 1 cut(s) 88
MspI CCGG 1 cut(s) 919
MspR9I CCNGG 1 cut(s) 919
Mva1269I GAATGC 2 cut(s) 492, 529
MvnI CGCG 4 cut(s) 20, 87, 143, 687
MwoI GCNNNNNNNGC 1 cut(s) 524
NciI CCSGG 1 cut(s) 919
NdeII GATC 3 cut(s) 119, 268, 322
NlaIII CATG 2 cut(s) 392, 401
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 3 cut(s) 6, 81, 338
NsbI TGCGCA 1 cut(s) 528
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 88
PagI TCATGA 1 cut(s) 388
PaqCI CACCTGC 1 cut(s) 680
PctI GAATGC 2 cut(s) 492, 529
PdmI GAANNNNTTC 2 cut(s) 231, 575
PfeI GAWTC 4 cut(s) 51, 65, 227, 385
PkrI GCNGC 3 cut(s) 113, 145, 148
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 2 cut(s) 119, 322
RsaI GTAC 3 cut(s) 432, 788, 827
RsaNI GTAC 3 cut(s) 431, 787, 826
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 3 cut(s) 96, 420, 930
SatI GCNGC 3 cut(s) 112, 144, 147
Sau3AI GATC 3 cut(s) 119, 268, 322
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 919
SfaNI GCATC 3 cut(s) 280, 625, 760
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 88
Sse9I AATT 1 cut(s) 575
SsiI CCGC 4 cut(s) 112, 143, 146, 685
SspI AATATT 1 cut(s) 701
SspMI CTAG 3 cut(s) 102, 195, 867
StyD4I CCNGG 1 cut(s) 917
TaaI ACNGT 3 cut(s) 59, 656, 928
TaiI ACGT 2 cut(s) 634, 936
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 575
TatI WGTACW 1 cut(s) 430
TauI GCSGC 3 cut(s) 114, 146, 149
TfiI GAWTC 4 cut(s) 51, 65, 227, 385
Tru1I TTAA 3 cut(s) 96, 420, 930
Tru9I TTAA 3 cut(s) 96, 420, 930
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 3 cut(s) 6, 81, 338
Tsp45I GTSAC 3 cut(s) 6, 81, 338
TspGWI ACGGA 2 cut(s) 123, 843
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 575
XceI RCATGY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 493
XmnI GAANNNNTTC 2 cut(s) 231, 575
XspI CTAG 3 cut(s) 102, 195, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.