Rh4DG267600

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0013271
Physical Location & Seq
Reverse (-)
48723096 .. 48725156
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG267600.1

Sequence Viewer

Length: 576 bp
ATGGCCTCTGTAGCTTTCTTCACTCCACCGGCTCTGAAACTGGTCACCGGAAATGTGTCTTCTCGGAACCAGAGTTCTTGCTCGGAATTCTCAAATGGGTACCCTTCGTTTTCTTCTTCTTGCAGACCAGTTAGAGCTCAGAAGCTCTCAGTTGGGCCCAGAAGGTCAGTGATTGTTGGGGCGAAGAAGAAGAACAACAACAAGGAGAGGAAGAAGGAAGATAAGCATAGCTTTGTGTCTAAACCTGATGAGGCTACTGGGCCTTTTCCTGAAGCTGTGCTGCTTAAACAGTCGAAAGTTCAGGAAGATGGGGCACTTCTCCCTGAGTTTGCGGACGCAGATGAAGAGAAGGTCTATGAATTTCTGAAGCTTCAGCTGCAAGATGATCTGGATGAGGAAAGACTGCGCCACTATGAGGTGGTTTATCTGATTCATGAGAAACATGCTGAAGAGGTGGGGAGTGTGAAGGAGAACATTGAAGTTGACATGTGCCACGACTTTCCATTGATACTTGTGTATGGATTTACTTGCAGCTTTTCTAGGGGAGAAGAGAGCCAGGATATGGAGACTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

191

Amino Acids

21.55

Weight (kDa)

5.26

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 562
AciI CCGC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 86, 359
AcuI CTGAAG 4 cut(s) 291, 356, 386, 468
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 415, 562
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 479
AjnI CCWGG 1 cut(s) 555
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 8 cut(s) 14, 137, 145, 231, 275, 370, 376, 534
AluI AGCT 8 cut(s) 14, 137, 145, 231, 275, 370, 376, 534
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 560
AoxI GGCC 3 cut(s) 3, 155, 260
ApaI GGGCCC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 280, 376, 531
ApoI RAATTY 2 cut(s) 86, 359
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 155, 156, 260
AsuHPI GGTGA 1 cut(s) 37
BaeGI GKGCMC 2 cut(s) 159, 316
BaeI ACNNNNGTAYC 2 cut(s) 500, 533
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 2 cut(s) 139, 159
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 267, 363, 543
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 557
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 3 cut(s) 281, 377, 532
BlsI GCNGC 3 cut(s) 282, 378, 533
Bme1390I CCNGG 1 cut(s) 557
BmgT120I GGNCC 3 cut(s) 155, 156, 260
BmiI GGNNCC 3 cut(s) 68, 101, 157
BmrFI CCNGG 1 cut(s) 557
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 1 cut(s) 557
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 562
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 45, 128, 262
BseBI CCWGG 1 cut(s) 557
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 2 cut(s) 415, 562
BseMII CTCAG 4 cut(s) 152, 162, 315, 561
BseNI ACTGG 3 cut(s) 45, 128, 262
BseSI GKGCMC 2 cut(s) 159, 316
BseXI GCAGC 3 cut(s) 267, 363, 543
BshFI GGCC 3 cut(s) 5, 157, 262
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 29, 48
BslI CCNNNNNNNGG 2 cut(s) 415, 562
BsmAI GTCTC 1 cut(s) 560
BsnI GGCC 3 cut(s) 5, 157, 262
Bsp120I GGGCCC 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 139, 159, 316
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 332
BspANI GGCC 3 cut(s) 5, 157, 262
BspCNI CTCAG 4 cut(s) 151, 161, 316, 562
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 68, 101, 157
BspT107I GGYRCC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 3 cut(s) 45, 128, 262
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 3 cut(s) 339, 444, 543
BstDEI CTNAG 4 cut(s) 138, 148, 324, 570
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 11, 376
BstNI CCWGG 1 cut(s) 557
BstNSI RCATGY 2 cut(s) 446, 490
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 555
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 159, 316
BstV1I GCAGC 3 cut(s) 267, 363, 543
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 3 cut(s) 5, 157, 262
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 174
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 155, 156, 260
CseI GACGC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 100
CviAII CATG 3 cut(s) 434, 443, 487
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 4 cut(s) 138, 148, 324, 570
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 3 cut(s) 339, 444, 543
EarI CTCTTC 3 cut(s) 339, 444, 543
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 2 cut(s) 139, 159
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 4 cut(s) 291, 356, 386, 468
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 555
EcoT38I GRGCYC 2 cut(s) 139, 159
FaeI CATG 3 cut(s) 437, 446, 490
FaiI YATR 8 cut(s) 228, 357, 414, 435, 444, 488, 519, 563
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 3 cut(s) 433, 442, 486
Fnu4HI GCNGC 3 cut(s) 281, 377, 532
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 2 cut(s) 139, 159
Fsp4HI GCNGC 3 cut(s) 281, 377, 532
FspBI CTAG 1 cut(s) 540
GlaI GCGC 1 cut(s) 407
GluI GCNGC 3 cut(s) 281, 377, 532
HaeIII GGCC 3 cut(s) 5, 157, 262
HapII CCGG 2 cut(s) 29, 48
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 408
Hin1II CATG 3 cut(s) 437, 446, 490
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 430
HpaII CCGG 2 cut(s) 29, 48
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 6 cut(s) 36, 66, 85, 141, 366, 429
Hpy188III TCNNGA 4 cut(s) 269, 302, 389, 434
Hpy8I GTNNAC 1 cut(s) 484
HpyAV CCTTC 5 cut(s) 114, 156, 208, 343, 460
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 123, 379, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 376
HpyF3I CTNAG 4 cut(s) 138, 148, 324, 570
Hsp92II CATG 3 cut(s) 437, 446, 490
HspAI GCGC 1 cut(s) 406
KpnI GGTACC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 385
Lsp1109I GCAGC 3 cut(s) 267, 363, 543
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MhlI GDGCHC 3 cut(s) 139, 159, 316
MluCI AATT 2 cut(s) 86, 359
MnlI CCTC 6 cut(s) 16, 201, 244, 388, 409, 445
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 2 cut(s) 29, 48
MspR9I CCNGG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 11, 376
NdeII GATC 1 cut(s) 385
NlaIII CATG 3 cut(s) 437, 446, 490
NlaIV GGNNCC 3 cut(s) 68, 101, 157
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 2 cut(s) 446, 490
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 562
PkrI GCNGC 3 cut(s) 282, 378, 533
PscI ACATGT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 555
PspEI GGTNACC 1 cut(s) 43
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 68, 101, 157
PspOMI GGGCCC 1 cut(s) 155
PspPI GGNCC 3 cut(s) 155, 156, 260
PvuII CAGCTG 1 cut(s) 376
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 281, 377, 532
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 3 cut(s) 155, 156, 260
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 3 cut(s) 139, 159, 316
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 86, 359
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 540
SstI GAGCTC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 293
TasI AATT 2 cut(s) 86, 359
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 280, 376, 531
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 357, 372, 422
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 1 cut(s) 562
XapI RAATTY 2 cut(s) 86, 359
XceI RCATGY 2 cut(s) 446, 490
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.