Rorug04G0208200

Ribosomal protein S6

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
36272696 .. 36272977
282 bp
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UTR
Exon/CDS
Intron
Rorug04G0208200.1

Sequence Viewer

Length: 174 bp
ATGGTGGGTACTTGCCTAATTGTCGAAGTCTCGAACTGGTCATTGTTCTTGGTTGCTCTCTTCCACATTCTGGGTTCGATTCTTCAGTTGAAGTCTTGCTTGGTAAGTTGCTGCTTTGCTGGATATTCACTAGTGTATGATTTTGGGTTGCTCTTGTTTTGCCGTTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.31

Weight (kDa)

6.49

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013271)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
Alw26I GTCTC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 34
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 1 cut(s) 131
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 65
BstMAI GTCTC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 9
CviQI GTAC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 68
FaiI YATR 1 cut(s) 138
FalI AAGNNNNNCTT 2 cut(s) 83, 115
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 31
LpnPI CCDG 3 cut(s) 22, 56, 105
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 131
MboII GAAGA 2 cut(s) 52, 74
MluCI AATT 1 cut(s) 18
PfeI GAWTC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 1 cut(s) 113
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SatI GCNGC 1 cut(s) 112
SpeI ACTAGT 1 cut(s) 130
Sse9I AATT 1 cut(s) 18
SspMI CTAG 1 cut(s) 131
TaqI TCGA 3 cut(s) 24, 32, 77
TasI AATT 1 cut(s) 18
TfiI GAWTC 1 cut(s) 79
TseI GCWGC 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 70
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.