Prupe.1G113000_v2.0.a1

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013271
Physical Location & Seq
Forward (+)
9002358 .. 9005605
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G113000.1

Sequence Viewer

Length: 891 bp
ATGGGGGCACTCTTACACTCCTTCTCTGTAGCTTTTATCACTCTAAAAACTTTAAAACTGGTCAAGGGAAATGGGTCCTCCAGAAACCAAATTTCAAGCTTGGAATTCGCAAATGGGTACTCCTCGTTTTCTTCTCGTAGGCCACTTACCTCTCAGAAGCTCTCTGTTGGACGTAGAAAGTCGGTGATTGTTGGTGCAAAGAAGAACAATAACAAGGAGAAGAAGAAGAACGACAATCATAGCTTCGTATCAAAACCGGATGAGGCCACTGGCCCTTTCCCTGAAGCTGTGCTGCTTAAAGAGAAGAAAGTTCAGGAAGATGGTAAACTTCTCCCTGAGTTTGCTGACGCAGAAGAAGAGAAGGTGTATGAATTTTTGAAGCTTCAGCGACAAAGCGATTTGAATGAGGAACGAATGCGCCACTATGAGGTGGTTTATCTGATTAATGAGAAGCATGTGGAAGAGGTTGGGAGTGTCAAGGAGAAAATTGAAGGTTTTCTAAGGGAGAAGAAAGCCAGGATATGGAGAGTGAGTGATTGGGGAATGCGAAGACTAGCATACCAAATAAAGAAAGCCAAGAATGCTTACTACATTCTGATGAACTTTGAGATAGAAGCCAAATGGATAAATGACTTTAAGACCATGTTGGACAAGGATGAAAGAGTCATTCGGCATCTTGTGATGAAGAGGGATGAGGCAATCACAGAGGACTGCCCTCCTCCTCCTGAGTTTCACAGCGCAGGTGCAGGTACGGATTCTGATCAGGAAGAGGAGGAGGATATGGAATACGACGACGAAGAGTACGGAGATGAAGATGGGATTATTATTGTTGACGCTGACAATGCTGATATAGAAGATAGGAAACAAGGAATGGTAGAACAAGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

297

Amino Acids

34.1

Weight (kDa)

5.34

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 731
Acc36I ACCTGC 2 cut(s) 731, 737
AccB7I CCANNNNNTGG 1 cut(s) 522
AcsI RAATTY 3 cut(s) 90, 104, 371
AcuI CTGAAG 2 cut(s) 303, 368
AfaI GTAC 3 cut(s) 119, 751, 803
AfiI CCNNNNNNNGG 2 cut(s) 427, 522
AgsI TTSAA 4 cut(s) 96, 379, 403, 491
AjnI CCWGG 1 cut(s) 515
AluBI AGCT 7 cut(s) 32, 99, 160, 243, 287, 382, 887
AluI AGCT 7 cut(s) 32, 99, 160, 243, 287, 382, 887
AoxI GGCC 3 cut(s) 140, 264, 271
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 3 cut(s) 90, 104, 371
AseI ATTAAT 1 cut(s) 444
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 2 cut(s) 420, 740
AspS9I GGNCC 2 cut(s) 75, 272
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 556
BbvI GCAGC 1 cut(s) 279
BccI CCATC 2 cut(s) 314, 809
BciT130I CCWGG 1 cut(s) 517
BclI TGATCA 1 cut(s) 760
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 2 cut(s) 731, 737
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 517
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 75, 272
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 556
BpmI CTGGAG 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 759
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 522
Bse1I ACTGG 2 cut(s) 63, 274
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 1 cut(s) 517
BseGI GGATG 3 cut(s) 265, 661, 697
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 2 cut(s) 427, 522
BseMII CTCAG 3 cut(s) 167, 327, 717
BseNI ACTGG 2 cut(s) 63, 274
BseRI GAGGAG 5 cut(s) 112, 708, 711, 785, 788
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 765
BshFI GGCC 3 cut(s) 142, 266, 273
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 427, 522
BsmI GAATGC 3 cut(s) 420, 549, 586
BsnI GGCC 3 cut(s) 142, 266, 273
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 760
BspANI GGCC 3 cut(s) 142, 266, 273
BspCNI CTCAG 3 cut(s) 166, 328, 718
BspLI GGNNCC 1 cut(s) 76
BspMI ACCTGC 2 cut(s) 731, 737
BsrI ACTGG 2 cut(s) 63, 274
BssMI GATC 1 cut(s) 760
Bst2UI CCWGG 1 cut(s) 517
Bst6I CTCTTC 5 cut(s) 351, 456, 680, 762, 792
BstDEI CTNAG 5 cut(s) 153, 336, 500, 726, 888
BstF5I GGATG 3 cut(s) 265, 661, 697
BstHHI GCGC 2 cut(s) 420, 740
BstKTI GATC 1 cut(s) 763
BstMBI GATC 1 cut(s) 760
BstMWI GCNNNNNNNGC 2 cut(s) 581, 842
BstNI CCWGG 1 cut(s) 517
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 515
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 556
BsuRI GGCC 3 cut(s) 142, 266, 273
BtsCI GGATG 3 cut(s) 265, 661, 697
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 2 cut(s) 731, 737
CfoI GCGC 2 cut(s) 420, 740
Cfr13I GGNCC 2 cut(s) 75, 272
CseI GACGC 2 cut(s) 356, 842
Csp6I GTAC 3 cut(s) 118, 750, 802
CviAII CATG 2 cut(s) 455, 643
CviQI GTAC 3 cut(s) 118, 750, 802
DdeI CTNAG 5 cut(s) 153, 336, 500, 726, 888
DpnI GATC 1 cut(s) 762
DpnII GATC 1 cut(s) 760
DraI TTTAAA 1 cut(s) 54
Eam1104I CTCTTC 5 cut(s) 351, 456, 680, 762, 792
EarI CTCTTC 5 cut(s) 351, 456, 680, 762, 792
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 2 cut(s) 303, 368
EcoO109I RGGNCCY 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 515
FaeI CATG 2 cut(s) 458, 646
FaiI YATR 9 cut(s) 240, 369, 426, 456, 523, 559, 644, 782, 851
FatI CATG 2 cut(s) 454, 642
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 3 cut(s) 272, 668, 704
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 1 cut(s) 554
GlaI GCGC 2 cut(s) 419, 739
GluI GCNGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 3 cut(s) 142, 266, 273
HapII CCGG 1 cut(s) 257
HgaI GACGC 2 cut(s) 356, 842
HhaI GCGC 2 cut(s) 420, 740
Hin1II CATG 2 cut(s) 458, 646
Hin6I GCGC 2 cut(s) 418, 738
HinP1I GCGC 2 cut(s) 418, 738
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 2 cut(s) 97, 380
HinfI GANTC 2 cut(s) 663, 755
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 326, 832
Hpy188I TCNGA 4 cut(s) 156, 441, 597, 760
Hpy188III TCNNGA 4 cut(s) 81, 314, 725, 764
Hpy8I GTNNAC 2 cut(s) 326, 832
Hpy99I CGWCG 2 cut(s) 794, 797
HpyAV CCTTC 3 cut(s) 31, 355, 485
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 197, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 842
HpyF3I CTNAG 5 cut(s) 153, 336, 500, 726, 888
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 2 cut(s) 458, 646
HspAI GCGC 2 cut(s) 418, 738
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 1 cut(s) 760
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 682
MaeI CTAG 1 cut(s) 554
MaeII ACGT 1 cut(s) 172
MalI GATC 1 cut(s) 762
MboI GATC 1 cut(s) 760
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 4 cut(s) 90, 104, 371, 486
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 2 cut(s) 148, 627
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 4 cut(s) 53, 297, 444, 636
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 517
Mva1269I GAATGC 3 cut(s) 420, 549, 586
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 2 cut(s) 581, 842
NdeII GATC 1 cut(s) 760
NlaIII CATG 2 cut(s) 458, 646
NlaIV GGNNCC 1 cut(s) 76
NspI RCATGY 1 cut(s) 458
PaqCI CACCTGC 1 cut(s) 731
PctI GAATGC 3 cut(s) 420, 549, 586
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 755
PflMI CCANNNNNTGG 1 cut(s) 522
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
PpuMI RGGWCCY 1 cut(s) 75
PshBI ATTAAT 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 515
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 75, 272
PspPPI RGGWCCY 1 cut(s) 75
RsaI GTAC 3 cut(s) 119, 751, 803
RsaNI GTAC 3 cut(s) 118, 750, 802
RseI CAYNNNNRTG 1 cut(s) 596
SaqAI TTAA 4 cut(s) 53, 297, 444, 636
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 1 cut(s) 760
Sau96I GGNCC 2 cut(s) 75, 272
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 1 cut(s) 517
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 596
Sse9I AATT 4 cut(s) 90, 104, 371, 486
SspMI CTAG 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 515
TaiI ACGT 1 cut(s) 175
TasI AATT 4 cut(s) 90, 104, 371, 486
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 4 cut(s) 53, 297, 444, 636
Tru9I TTAA 4 cut(s) 53, 297, 444, 636
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 384, 614, 672, 698, 825
TspGWI ACGGA 2 cut(s) 767, 819
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 75
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 3 cut(s) 90, 104, 371
XceI RCATGY 1 cut(s) 458
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 1 cut(s) 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.