MD16G1149200.v1.1

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013271
Physical Location & Seq
Forward (+)
11718771 .. 11728893
10123 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1149200.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGGGGCACTCATACACTCCTTCTCTGTAGCTTCTCTCACTCCAACGGCTCTAGAACTGGTCTGCAAAAATGGGCCCTCCTCCAAAAACCAAAATTCAAGCTTTCAATTCTCAAATGGGTTCTCTTCGTTTTCTTCTCGTCGGCCATTTCCAGCTCAGAAGGTCCCAGTCAGAGTCAGAAGGTCGGTGATTGTTTTTGCAAAGAAGAACAGCAACAAGGAGAAGAAGAAGGAAGACAACCACAGCTTTGCATCGAAATTGGATGACGCCACTGGGCCTTTCCCTGAGTCTGTGCTGCTTAAACAGAAGAAAGTTCAGGAAGATGGTAACCTTCTCCCTGAGTTTGCAGATGCCGAAGAAGAGAAGGTGTATGAATTTTTGAAGCTTCAGCTGCAAAGCGATTTGAATGAGGAACGAATGCGCCACTATGAGCTGGTTTATCTGATTCATGAGAAACATGCCGAAGAGGTTGGGAGTGTCAAAGAGAAAATTGAAGAGTTTCTAGCGGAGAAGAAGGCCAGGATATGGAGAGTGAGCAATTGGGGAATGCGAAGACTAGCATACCAAATAAAGAAAGTGAAGAACGCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

198

Amino Acids

22.68

Weight (kDa)

9.46

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 142 - 197 1.1e-11 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 525
AciI CCGC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 94, 374
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 525
AgsI TTSAA 5 cut(s) 99, 107, 382, 406, 494
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 7 cut(s) 32, 102, 155, 246, 385, 391, 433
AluI AGCT 7 cut(s) 32, 102, 155, 246, 385, 391, 433
AoxI GGCC 4 cut(s) 74, 143, 275, 516
ApaI GGGCCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 295, 391
ApoI RAATTY 2 cut(s) 94, 374
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 4 cut(s) 74, 75, 163, 275
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 2 cut(s) 10, 78
BanII GRGCYC 1 cut(s) 78
BarI GAAGNNNNNNTAC 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 240, 559
BbvI GCAGC 2 cut(s) 282, 378
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 520
BfaI CTAG 4 cut(s) 53, 503, 557, 592
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 2 cut(s) 296, 392
BlsI GCNGC 2 cut(s) 297, 393
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 4 cut(s) 74, 75, 163, 275
BmiI GGNNCC 2 cut(s) 76, 165
BmrFI CCNGG 1 cut(s) 520
BmrI ACTGGG 2 cut(s) 161, 282
BmsI GCATC 2 cut(s) 260, 340
BmuI ACTGGG 2 cut(s) 161, 282
BpiI GAAGAC 2 cut(s) 240, 559
BsaHI GRCGYC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse1I ACTGG 3 cut(s) 63, 167, 277
BseBI CCWGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 525
BseMII CTCAG 3 cut(s) 170, 276, 330
BseNI ACTGG 3 cut(s) 63, 167, 277
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 2 cut(s) 10, 78
BseXI GCAGC 2 cut(s) 282, 378
BshFI GGCC 4 cut(s) 76, 145, 277, 518
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 2 cut(s) 423, 552
BsnI GGCC 4 cut(s) 76, 145, 277, 518
Bsp120I GGGCCC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 10, 78
BspACI CCGC 1 cut(s) 506
BspANI GGCC 4 cut(s) 76, 145, 277, 518
BspCNI CTCAG 3 cut(s) 169, 277, 331
BspHI TCATGA 1 cut(s) 448
BspLI GGNNCC 2 cut(s) 76, 165
BsrI ACTGG 3 cut(s) 63, 167, 277
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 520
Bst6I CTCTTC 4 cut(s) 130, 354, 459, 489
BstACI GRCGYC 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 156, 285, 339
BstEII GGTNACC 1 cut(s) 326
BstF5I GGATG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 423
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 461
BstPI GGTNACC 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 2 cut(s) 10, 78
BstV1I GCAGC 2 cut(s) 282, 378
BstV2I GAAGAC 2 cut(s) 240, 559
BsuRI GGCC 4 cut(s) 76, 145, 277, 518
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 270
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 4 cut(s) 74, 75, 163, 275
CseI GACGC 1 cut(s) 275
CviAII CATG 2 cut(s) 449, 458
DdeI CTNAG 3 cut(s) 156, 285, 339
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 4 cut(s) 130, 354, 459, 489
EarI CTCTTC 4 cut(s) 130, 354, 459, 489
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 326
EcoO109I RGGNCCY 2 cut(s) 75, 163
EcoO65I GGTNACC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 518
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 2 cut(s) 452, 461
FaiI YATR 7 cut(s) 14, 372, 429, 450, 459, 526, 562
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 448, 457
Fnu4HI GCNGC 2 cut(s) 296, 392
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 296, 392
FspBI CTAG 4 cut(s) 53, 503, 557, 592
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 296, 392
HaeIII GGCC 4 cut(s) 76, 145, 277, 518
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 423
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 452, 461
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 2 cut(s) 100, 383
HinfI GANTC 3 cut(s) 174, 287, 445
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 159, 173, 179, 444
Hpy188III TCNNGA 3 cut(s) 53, 317, 449
Hpy99I CGWCG 1 cut(s) 144
HpyAV CCTTC 7 cut(s) 31, 154, 174, 223, 341, 358, 508
HpyCH4V TGCA 5 cut(s) 66, 200, 251, 347, 394
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 3 cut(s) 156, 285, 339
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 452, 461
HspAI GCGC 1 cut(s) 421
Lsp1109I GCAGC 2 cut(s) 282, 378
LweI GCATC 2 cut(s) 260, 340
MaeI CTAG 4 cut(s) 53, 503, 557, 592
MaeIII GTNAC 1 cut(s) 326
MfeI CAATTG 1 cut(s) 538
MhlI GDGCHC 2 cut(s) 10, 78
MluCI AATT 6 cut(s) 94, 107, 257, 374, 489, 538
MlyI GAGTC 2 cut(s) 183, 296
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 88, 91, 403, 460
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 520
MunI CAATTG 1 cut(s) 538
Mva1269I GAATGC 2 cut(s) 423, 552
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 1 cut(s) 391
NlaIII CATG 2 cut(s) 452, 461
NlaIV GGNNCC 2 cut(s) 76, 165
NspI RCATGY 1 cut(s) 461
PagI TCATGA 1 cut(s) 448
PctI GAATGC 2 cut(s) 423, 552
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 445
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 2 cut(s) 297, 393
PleI GAGTC 2 cut(s) 182, 295
PpsI GAGTC 2 cut(s) 182, 295
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 518
PspEI GGTNACC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 2 cut(s) 76, 165
PspOMI GGGCCC 1 cut(s) 74
PspPI GGNCC 4 cut(s) 74, 75, 163, 275
PspPPI RGGWCCY 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 391
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 296, 392
Sau96I GGNCC 4 cut(s) 74, 75, 163, 275
SchI GAGTC 2 cut(s) 183, 296
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 2 cut(s) 10, 78
SfaNI GCATC 2 cut(s) 260, 340
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 163
Sse9I AATT 6 cut(s) 94, 107, 257, 374, 489, 538
SsiI CCGC 1 cut(s) 506
SspMI CTAG 4 cut(s) 53, 503, 557, 592
StyD4I CCNGG 1 cut(s) 518
TaqI TCGA 1 cut(s) 254
TasI AATT 6 cut(s) 94, 107, 257, 374, 489, 538
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 277
TseI GCWGC 2 cut(s) 295, 391
TspDTI ATGAA 2 cut(s) 387, 437
TspRI CASTG 1 cut(s) 277
Van91I CCANNNNNTGG 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 2 cut(s) 94, 374
XbaI TCTAGA 1 cut(s) 52
XceI RCATGY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 4 cut(s) 53, 503, 557, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.