Rmu_ssc0000281.1_g000002

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000281.1
OG0013271
Physical Location & Seq
Forward (+)
2339 .. 3621
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000281.1_g000002.1.cds

Sequence Viewer

Length: 486 bp
atggcctctgtagctttcttcactccaccggctctgaaactggtcaccggaaatgtgtcttctcggaaccagagttcttgctcggaattctcaaatgggtacccttcgttttcttcttcttgcagaccatttagagctcagaagctctcagttgggcccagaaggtcagtgattgttggggcgaagaagaagaacaacaacaaggagaggaagaaggaagataagcatagctttgtgtctaaacctgatgaggctactgggccttttcctgaagctgtgctgcttaaacagtcgaaagttcaggaagatggggcacttctccctgagtttgcggacgcagatgaagagaaggtctatgaatttctgaagcttcagctgcaagatgatctggatgaggaaagactgcgccactatgaggtggtttatctgattcatgagaaacatgctgaagaggtggggagtgtgaaggagaacattgaaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

161

Amino Acids

18.09

Weight (kDa)

6.12

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17170
fragaria_vesca FvH4_4g20660
malus_domestica MD13G1149000.v1.1 MD16G1149200.v1.1
prunus_persica Prupe.1G113000_v2.0.a1
pyrus_communis pycom13g12820 pycom16g12750
rosa_chinensis RchiOBHm_Chr4g0426061
rosa_laevigata RLG00000007320
rosa_multiflora Rmu_ssc0000281.1_g000002 Rmu_ssc0000281.1_g000007
rosa_roxburghii Rroxscaffold_5G00368060
rosa_rugosa Rorug04G0208200
rosa_samantha Rh4AG265200 Rh4BG271300 Rh4CG284300 Rh4DG267600
rosa_wichuraiana Rw4G022930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AciI CCGC 1 cut(s) 332
AcsI RAATTY 2 cut(s) 86, 359
AcuI CTGAAG 4 cut(s) 291, 356, 386, 468
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 1 cut(s) 479
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 7 cut(s) 14, 137, 145, 231, 275, 370, 376
AluI AGCT 7 cut(s) 14, 137, 145, 231, 275, 370, 376
Alw21I GWGCWC 1 cut(s) 139
AoxI GGCC 3 cut(s) 3, 155, 260
ApaI GGGCCC 1 cut(s) 159
ApeKI GCWGC 2 cut(s) 280, 376
ApoI RAATTY 2 cut(s) 86, 359
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 155, 156, 260
AsuHPI GGTGA 1 cut(s) 37
BaeGI GKGCMC 2 cut(s) 159, 316
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 2 cut(s) 139, 159
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 267, 363
BccI CCATC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 281, 377
BlsI GCNGC 2 cut(s) 282, 378
BmgT120I GGNCC 3 cut(s) 155, 156, 260
BmiI GGNNCC 3 cut(s) 68, 101, 157
BmrI ACTGGG 1 cut(s) 267
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 45, 262
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMII CTCAG 3 cut(s) 152, 162, 315
BseNI ACTGG 2 cut(s) 45, 262
BseSI GKGCMC 2 cut(s) 159, 316
BseXI GCAGC 2 cut(s) 267, 363
BshFI GGCC 3 cut(s) 5, 157, 262
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 29, 48
BslI CCNNNNNNNGG 1 cut(s) 415
BsnI GGCC 3 cut(s) 5, 157, 262
Bsp120I GGGCCC 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 139, 159, 316
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 1 cut(s) 332
BspANI GGCC 3 cut(s) 5, 157, 262
BspCNI CTCAG 3 cut(s) 151, 161, 316
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 68, 101, 157
BspT107I GGYRCC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 2 cut(s) 45, 262
BssAI RCCGGY 1 cut(s) 28
BssMI GATC 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 339, 444
BstDEI CTNAG 3 cut(s) 138, 148, 324
BstEII GGTNACC 1 cut(s) 43
BstF5I GGATG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 2 cut(s) 11, 376
BstNSI RCATGY 1 cut(s) 446
BstPI GGTNACC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 2 cut(s) 159, 316
BstV1I GCAGC 2 cut(s) 267, 363
BstV2I GAAGAC 1 cut(s) 51
BsuRI GGCC 3 cut(s) 5, 157, 262
BtsCI GGATG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 174
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 3 cut(s) 155, 156, 260
CseI GACGC 1 cut(s) 344
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 434, 443
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 3 cut(s) 138, 148, 324
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 339, 444
EarI CTCTTC 2 cut(s) 339, 444
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 2 cut(s) 139, 159
Eco53kI GAGCTC 1 cut(s) 137
Eco57I CTGAAG 4 cut(s) 291, 356, 386, 468
Eco91I GGTNACC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 139, 159
FaeI CATG 2 cut(s) 437, 446
FaiI YATR 5 cut(s) 228, 357, 414, 435, 444
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 2 cut(s) 433, 442
Fnu4HI GCNGC 2 cut(s) 281, 377
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 2 cut(s) 139, 159
Fsp4HI GCNGC 2 cut(s) 281, 377
GlaI GCGC 1 cut(s) 407
GluI GCNGC 2 cut(s) 281, 377
HaeIII GGCC 3 cut(s) 5, 157, 262
HapII CCGG 2 cut(s) 29, 48
HgaI GACGC 1 cut(s) 344
HhaI GCGC 1 cut(s) 408
Hin1II CATG 2 cut(s) 437, 446
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 430
HpaII CCGG 2 cut(s) 29, 48
HphI GGTGA 1 cut(s) 37
Hpy188I TCNGA 6 cut(s) 36, 66, 85, 141, 366, 429
Hpy188III TCNNGA 4 cut(s) 269, 302, 389, 434
HpyAV CCTTC 6 cut(s) 114, 156, 208, 343, 460, 473
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 123, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 376
HpyF3I CTNAG 3 cut(s) 138, 148, 324
Hsp92II CATG 2 cut(s) 437, 446
HspAI GCGC 1 cut(s) 406
KpnI GGTACC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 385
Lsp1109I GCAGC 2 cut(s) 267, 363
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MhlI GDGCHC 3 cut(s) 139, 159, 316
MluCI AATT 2 cut(s) 86, 359
MnlI CCTC 6 cut(s) 16, 201, 244, 388, 409, 445
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 2 cut(s) 29, 48
MwoI GCNNNNNNNGC 2 cut(s) 11, 376
NdeII GATC 1 cut(s) 385
NlaIII CATG 2 cut(s) 437, 446
NlaIV GGNNCC 3 cut(s) 68, 101, 157
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 446
PagI TCATGA 1 cut(s) 433
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 2 cut(s) 282, 378
Psp124BI GAGCTC 1 cut(s) 139
PspEI GGTNACC 1 cut(s) 43
PspN4I GGNNCC 3 cut(s) 68, 101, 157
PspOMI GGGCCC 1 cut(s) 155
PspPI GGNCC 3 cut(s) 155, 156, 260
PvuII CAGCTG 1 cut(s) 376
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SacI GAGCTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 281, 377
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 3 cut(s) 155, 156, 260
SduI GDGCHC 3 cut(s) 139, 159, 316
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 2 cut(s) 86, 359
SsiI CCGC 1 cut(s) 332
SstI GAGCTC 1 cut(s) 139
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 293
TasI AATT 2 cut(s) 86, 359
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 2 cut(s) 280, 376
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 357, 372, 422
TspRI CASTG 1 cut(s) 174
XapI RAATTY 2 cut(s) 86, 359
XceI RCATGY 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.