AT3G17350

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013145
Physical Location & Seq
Forward (+)
5934033 .. 5935376
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17350.1

Sequence Viewer

Length: 906 bp
ATGACGAAGCTCTTCTTCTTCTTCTTCTCCTTCCTCTACACAATCACAACCCTAACATTTCCGCCATTAACAACCTCAGCAGCAACATCATGCCGAACATTATGCGGCAACATCCCAATAAACTACCCGTTCGGCATCGACGGCGGTTGCGGATCTCCTCAATACAGAGGAATGTTCAATTGCTCCACCGATCTATATTTCACCACTCCTTCCGGCAGCTATAAGGTCCAAAGCATCGATTACGAGAAGAAAACAATGGTAATCTTCGATCCTGCTATGTCTACTTGCTCGATTCTTCAGCCTCACCACGATTTCAAAATGGCGGATATTCAAAACACTCTTATTAGACCTTCGTACGACACCGTTTTCGCACTTTTCAACTGTTCCAACGATTCTCCTGTTCATAATCGTTACCGGAATCTATGTTTTAATGCCGCCGGCCACTCTTGCGACGAGCTTTATAGCTCCTGTACTTCCTTTCGAATCTTCAACACCACTTCTCCCTATGGTAACAACAGTACGGTTCATACGACGCCGTATTGCTGTTTCACTAACTACGATACGGTGCGGGTGATGAGTATGAACATTTTGGATTGCTCACATTACACGACGGTGATTGACAATGGAAAAATGAGAGGAGTGGGGCCTTTGGATTGGTCCTATGGAATCGAGCTTTCGTACTCGGTAACGGAGATTGGCTGTGACCGTTGCCGAAAGTCAGGTGGCACTTGTGGCTTTGACGCCGAGACGGAGATCTTTCTTTGCCAGTGTTCCGGTTCCAACAACAACCCTACGAGAGAATGTGGTGGAGGTATGACTGATCGAGGAGGCTGCAGTTTTACAAACATAAATTTTATAACGACTCTCTTGACTATGTTCATGTCTTTTATTTACACTGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

301

Amino Acids

33.58

Weight (kDa)

5.83

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 31 - 89 6.3e-11 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 222 - 259 8.1e-07 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17350 AT3G17350
fragaria_vesca FvH4_4g21130
malus_domestica MD16G1139400.v1.1
prunus_persica Prupe.1G108900_v2.0.a1
pyrus_communis pycom16g12380
rosa_chinensis RchiOBHm_Chr4g0426711
rosa_laevigata RLG00000007284
rosa_multiflora Rmu_co8392541.1_g000001 Rmu_sc0010934.1_g000002 Rmu_sc0021908.1_g000002
rosa_roxburghii Rroxscaffold_5G00368680
rosa_rugosa Rorug04G0214400
rosa_samantha Rh4AG269400 Rh4BG275700 Rh4CG290200 Rh4DG272700
rosa_wichuraiana Rw4G023370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 857
AccI GTMKAC 1 cut(s) 281
AciI CCGC 7 cut(s) 62, 105, 144, 150, 323, 435, 568
AclWI GGATC 2 cut(s) 160, 263
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 850
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 2 cut(s) 533, 741
AfaI GTAC 4 cut(s) 356, 472, 520, 680
AgsI TTSAA 5 cut(s) 178, 316, 332, 379, 490
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 5 cut(s) 10, 219, 457, 465, 673
AluI AGCT 5 cut(s) 10, 219, 457, 465, 673
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 2 cut(s) 160, 263
AoxI GGCC 2 cut(s) 439, 644
ApeKI GCWGC 3 cut(s) 80, 216, 831
ApoI RAATTY 1 cut(s) 850
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 226, 644, 657
AsuHPI GGTGA 4 cut(s) 193, 296, 583, 625
AsuII TTCGAA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 226, 657
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 3 cut(s) 92, 228, 818
BceAI ACGGC 2 cut(s) 157, 520
BcgI CGANNNNNNTGC 4 cut(s) 84, 118, 813, 847
BcoDI GTCTC 1 cut(s) 740
BfmI CTRYAG 1 cut(s) 832
BglII AGATCT 1 cut(s) 753
BisI GCNGC 5 cut(s) 81, 106, 217, 435, 832
BlsI GCNGC 5 cut(s) 82, 107, 218, 436, 833
Bme18I GGWCC 2 cut(s) 226, 657
BmgT120I GGNCC 3 cut(s) 226, 644, 657
BmiI GGNNCC 2 cut(s) 645, 778
BmsI GCATC 2 cut(s) 144, 243
Bpu10I CCTNAGC 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 237
BsaHI GRCGYC 2 cut(s) 533, 741
BsaWI WCCGGW 2 cut(s) 414, 773
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 766
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 3 cut(s) 147, 651, 840
BseXI GCAGC 3 cut(s) 92, 228, 818
BshFI GGCC 2 cut(s) 441, 646
BshVI ATCGAT 1 cut(s) 237
BsiSI CCGG 4 cut(s) 213, 415, 438, 774
BsiWI CGTACG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 740
BsmBI CGTCTC 1 cut(s) 740
BsnI GGCC 2 cut(s) 441, 646
Bsp119I TTCGAA 1 cut(s) 481
Bsp143I GATC 5 cut(s) 152, 190, 268, 753, 820
BspACI CCGC 7 cut(s) 62, 105, 144, 150, 323, 435, 568
BspANI GGCC 2 cut(s) 441, 646
BspCNI CTCAG 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 645, 778
BspMAI CTGCAG 1 cut(s) 836
BspPI GGATC 2 cut(s) 160, 263
BspQI GCTCTTC 1 cut(s) 17
BspT104I TTCGAA 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 1 cut(s) 766
BssAI RCCGGY 1 cut(s) 437
BssMI GATC 5 cut(s) 152, 190, 268, 753, 820
BssNI GRCGYC 2 cut(s) 533, 741
Bst4CI ACNGT 8 cut(s) 364, 383, 518, 523, 565, 613, 707, 898
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 2 cut(s) 533, 741
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 5 cut(s) 155, 193, 271, 756, 823
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 5 cut(s) 152, 190, 268, 753, 820
BstMWI GCNNNNNNNGC 3 cut(s) 141, 447, 732
BstSFI CTRYAG 1 cut(s) 832
BstV1I GCAGC 3 cut(s) 92, 228, 818
BstX2I RGATCY 2 cut(s) 152, 753
BstYI RGATCY 2 cut(s) 152, 753
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 2 cut(s) 441, 646
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 773, 894
Cac8I GCNNGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 3 cut(s) 226, 644, 657
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 2 cut(s) 541, 749
Csp6I GTAC 4 cut(s) 355, 471, 519, 679
CviAII CATG 2 cut(s) 90, 880
CviQI GTAC 4 cut(s) 355, 471, 519, 679
DdeI CTNAG 1 cut(s) 76
DpnI GATC 5 cut(s) 154, 192, 270, 755, 822
DpnII GATC 5 cut(s) 152, 190, 268, 753, 820
EaeI YGGCCR 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 2 cut(s) 51, 338
Eco47I GGWCC 2 cut(s) 226, 657
Eco57I CTGAAG 1 cut(s) 281
EcoO109I RGGNCCY 1 cut(s) 644
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 2 cut(s) 93, 883
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 2 cut(s) 89, 879
FauI CCCGC 1 cut(s) 561
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 5 cut(s) 81, 106, 217, 435, 832
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 5 cut(s) 81, 106, 217, 435, 832
GluI GCNGC 5 cut(s) 81, 106, 217, 435, 832
HaeIII GGCC 2 cut(s) 441, 646
HapII CCGG 4 cut(s) 213, 415, 438, 774
HgaI GACGC 2 cut(s) 541, 749
Hin1I GRCGYC 2 cut(s) 533, 741
Hin1II CATG 2 cut(s) 93, 883
HinfI GANTC 6 cut(s) 292, 392, 418, 483, 666, 862
HpaII CCGG 4 cut(s) 213, 415, 438, 774
HphI GGTGA 4 cut(s) 193, 296, 583, 625
Hpy166II GTNNAC 1 cut(s) 282
Hpy188III TCNNGA 1 cut(s) 868
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 4 cut(s) 143, 455, 535, 613
HpyAV CCTTC 3 cut(s) 40, 219, 360
HpyCH4III ACNGT 8 cut(s) 364, 383, 518, 523, 565, 613, 707, 898
HpyCH4V TGCA 1 cut(s) 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 447, 732
HpyF3I CTNAG 1 cut(s) 76
Hsp92I GRCGYC 2 cut(s) 533, 741
Hsp92II CATG 2 cut(s) 93, 883
KroI GCCGGC 1 cut(s) 437
KroNI GCCGGC 1 cut(s) 439
Kzo9I GATC 5 cut(s) 152, 190, 268, 753, 820
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 188, 470
LpnPI CCDG 9 cut(s) 226, 285, 411, 428, 451, 481, 705, 779, 787
Lsp1109I GCAGC 3 cut(s) 92, 228, 818
LweI GCATC 2 cut(s) 144, 243
MaeIII GTNAC 4 cut(s) 410, 509, 685, 701
MalI GATC 5 cut(s) 154, 192, 270, 755, 822
MboI GATC 5 cut(s) 152, 190, 268, 753, 820
MboII GAAGA 9 cut(s) 4, 7, 10, 13, 16, 256, 259, 287, 478
MfeI CAATTG 1 cut(s) 178
MflI RGATCY 2 cut(s) 152, 753
MluCI AATT 2 cut(s) 178, 850
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 2 cut(s) 411, 804
MnlI CCTC 9 cut(s) 44, 85, 161, 168, 312, 629, 803, 818, 821
MroNI GCCGGC 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 2 cut(s) 68, 429
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 4 cut(s) 213, 415, 438, 774
MunI CAATTG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 141, 447, 732
NaeI GCCGGC 1 cut(s) 439
NdeII GATC 5 cut(s) 152, 190, 268, 753, 820
NgoMIV GCCGGC 1 cut(s) 437
NlaIII CATG 2 cut(s) 93, 883
NlaIV GGNNCC 2 cut(s) 645, 778
NmeAIII GCCGAG 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 701
NspV TTCGAA 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PdiI GCCGGC 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 5 cut(s) 292, 392, 418, 483, 666
Pfl23II CGTACG 1 cut(s) 354
PkrI GCNGC 5 cut(s) 82, 107, 218, 436, 833
PleI GAGTC 1 cut(s) 856
PpsI GAGTC 1 cut(s) 856
PsiI TTATAA 1 cut(s) 857
PspLI CGTACG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 645, 778
PspPI GGNCC 3 cut(s) 226, 644, 657
PstI CTGCAG 1 cut(s) 836
PsuI RGATCY 2 cut(s) 152, 753
RsaI GTAC 4 cut(s) 356, 472, 520, 680
RsaNI GTAC 4 cut(s) 355, 471, 519, 679
RseI CAYNNNNRTG 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 68, 429
SatI GCNGC 5 cut(s) 81, 106, 217, 435, 832
Sau3AI GATC 5 cut(s) 152, 190, 268, 753, 820
Sau96I GGNCC 3 cut(s) 226, 644, 657
SchI GAGTC 1 cut(s) 856
SfaNI GCATC 2 cut(s) 144, 243
SfcI CTRYAG 1 cut(s) 832
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 2 cut(s) 226, 657
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 2 cut(s) 178, 850
SsiI CCGC 7 cut(s) 62, 105, 144, 150, 323, 435, 568
TaaI ACNGT 8 cut(s) 364, 383, 518, 523, 565, 613, 707, 898
TaqI TCGA 7 cut(s) 138, 237, 267, 290, 481, 669, 823
TasI AATT 2 cut(s) 178, 850
TatI WGTACW 1 cut(s) 470
TauI GCSGC 2 cut(s) 108, 437
TfiI GAWTC 5 cut(s) 292, 392, 418, 483, 666
Tru1I TTAA 2 cut(s) 68, 429
Tru9I TTAA 2 cut(s) 68, 429
TscAI CASTG 2 cut(s) 773, 901
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 3 cut(s) 80, 216, 831
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 4 cut(s) 392, 515, 596, 868
TspGWI ACGGA 2 cut(s) 704, 764
TspRI CASTG 2 cut(s) 773, 901
VpaK11BI GGWCC 2 cut(s) 226, 657
XapI RAATTY 1 cut(s) 850
XmiI GTMKAC 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.