pycom16g12380

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013145
Physical Location & Seq
Reverse (-)
8690104 .. 8691291
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g12380.2

Sequence Viewer

Length: 1050 bp
ATGTGGTGGTCTCAGTCAAAACCACTCATCACCACCGTCAACGTCCTCCTCCTATCACTCCACCTCCACCTCCTCCCCACCCCCACTCTCTCCCAATGCCGCACCTCCTGCGGCCCCATCCCCATACACTACCCTTTCGCCCTCGATGACGGCTGTGGCGCGCCCCAGTTCCGCCACATGTTCAACTGCTCCACCGACCTCTTCTTCGCCACCCCATCCGGAAACTACAAAGTCCAGTCCATAAACTACGACAAGAAAACCATGGTCGTCTACGACCCCGCCATGTCCACCTGCTCCATCCTCCAGCCCCACCACGACTTCCTCATGACCCCAATCCAGTCCGCCATTATCCCGCCGACCTCCGACACCGTCTTCGCACTCCTCAACTGCTCCGTCGACTCCCCTGTCCTCAACCACTACAAGTACCTCTGCTTCAACTTCTCCGGCCACTCCTGTGACGAGCTCTACGACTCCTGCAACGCTTTTCGAATTTTCCGTACCGGTTCCGGATTGGCCACTCCTACCCCCAGCCCCGGAGGATTTTTAAGCAACGGTACTACCCCCAGTCCCGGAGGATTTTTAAGCAACGGTACTACCCCCAGTCCCGGAGGATTTCTAACCAACGGTACTCCTCCTCCTCCTGCTACTACGACTACTTCTCCGCCGTGTTGTTTTACGGGGTACGATTCGGTGAAGTTCATGAGCATGAATATATTGGACTGCACGCATTATACTAGCGTGACGAATACGGATGGATTGAAAGGGTTAGGACCGCCGGATTGGGTTTACGGGATTAAGCTGAGCTTCGCGGTGCCGGATACCGGGTGTGAGAGGTGTGCGCAGTCCGGTGGGACTTGTGGGTTTGATACCGAGACTGAAGGGTCTCTCTGCCTCTGCTCAACTTCCTCTAATTTCACTAGACAATGTGGTGCAGGCAGTTTTTCAGCGGTAGGACGGGACTGTTCTCCCAATATACTATTCCAAGCATCCTTTGTGATTTTGGGGGCGTTGTTAGTCTTTTTGCATGAGTTTAGGATGCTGAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

350

Amino Acids

37.55

Weight (kDa)

5.87

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17350 AT3G17350
fragaria_vesca FvH4_4g21130
malus_domestica MD16G1139400.v1.1
prunus_persica Prupe.1G108900_v2.0.a1
pyrus_communis pycom16g12380
rosa_chinensis RchiOBHm_Chr4g0426711
rosa_laevigata RLG00000007284
rosa_multiflora Rmu_co8392541.1_g000001 Rmu_sc0010934.1_g000002 Rmu_sc0021908.1_g000002
rosa_roxburghii Rroxscaffold_5G00368680
rosa_rugosa Rorug04G0214400
rosa_samantha Rh4AG269400 Rh4BG275700 Rh4CG290200 Rh4DG272700
rosa_wichuraiana Rw4G023370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
AasI GACNNNNNNGTC 2 cut(s) 404, 880
Acc16I TGCGCA 1 cut(s) 840
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 811
AccI GTMKAC 2 cut(s) 270, 396
AccII CGCG 2 cut(s) 161, 809
AccIII TCCGGA 2 cut(s) 218, 506
AcoI YGGCCR 2 cut(s) 445, 513
AcsI RAATTY 2 cut(s) 489, 1042
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 6 cut(s) 425, 499, 556, 592, 628, 683
AfiI CCNNNNNNNGG 4 cut(s) 533, 569, 605, 821
AflIII ACRYGT 1 cut(s) 177
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 3 cut(s) 184, 436, 760
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 3 cut(s) 463, 799, 804
AluI AGCT 3 cut(s) 463, 799, 804
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 3 cut(s) 15, 866, 888
Aor13HI TCCGGA 2 cut(s) 218, 506
AoxI GGCC 3 cut(s) 112, 445, 513
ApoI RAATTY 2 cut(s) 489, 1042
ArsI GACNNNNNNTTYG 4 cut(s) 188, 220, 356, 388
AscI GGCGCGCC 1 cut(s) 159
AsiGI ACCGGT 1 cut(s) 500
AspLEI GCGC 3 cut(s) 161, 163, 841
AspS9I GGNCC 2 cut(s) 113, 770
AsuC2I CCSGG 4 cut(s) 534, 570, 606, 823
AsuHPI GGTGA 2 cut(s) 22, 703
AsuII TTCGAA 1 cut(s) 487
AvaII GGWCC 1 cut(s) 770
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 1 cut(s) 465
BarI GAAGNNNNNNTAC 2 cut(s) 416, 448
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 465
BccI CCATC 4 cut(s) 125, 223, 305, 746
BceAI ACGGC 2 cut(s) 166, 649
BciVI GTATCC 1 cut(s) 811
BcnI CCSGG 4 cut(s) 534, 570, 606, 823
BcoDI GTCTC 3 cut(s) 15, 866, 888
BfaI CTAG 2 cut(s) 735, 918
BfuAI ACCTGC 1 cut(s) 299
BfuI GTATCC 1 cut(s) 811
BisI GCNGC 2 cut(s) 100, 112
BlpI GCTNAGC 1 cut(s) 800
BlsI GCNGC 2 cut(s) 101, 113
Bme1390I CCNGG 4 cut(s) 534, 570, 606, 823
Bme18I GGWCC 1 cut(s) 770
BmgT120I GGNCC 2 cut(s) 113, 770
BmiI GGNNCC 3 cut(s) 115, 505, 813
BmrFI CCNGG 4 cut(s) 534, 570, 606, 823
BmrI ACTGGG 3 cut(s) 160, 558, 594
BmsI GCATC 2 cut(s) 995, 1026
BmuI ACTGGG 3 cut(s) 160, 558, 594
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 800
Bpu14I TTCGAA 1 cut(s) 487
BpuMI CCSGG 4 cut(s) 534, 570, 606, 823
BsaI GGTCTC 2 cut(s) 15, 888
BsaJI CCNNGG 2 cut(s) 261, 532
BsaWI WCCGGW 4 cut(s) 218, 500, 506, 845
BsaXI ACNNNNNCTCC 6 cut(s) 48, 78, 619, 643, 649, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 569, 605, 821
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 5 cut(s) 166, 235, 337, 564, 600
BseAI TCCGGA 2 cut(s) 218, 506
BseDI CCNNGG 2 cut(s) 261, 532
BseGI GGATG 6 cut(s) 117, 215, 297, 757, 986, 1041
BseLI CCNNNNNNNGG 4 cut(s) 533, 569, 605, 821
BseMII CTCAG 2 cut(s) 26, 791
BseNI ACTGG 5 cut(s) 166, 235, 337, 564, 600
BsePI GCGCGC 1 cut(s) 159
BseRI GAGGAG 6 cut(s) 38, 62, 371, 621, 624, 627
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 2 cut(s) 706, 951
Bsh1236I CGCG 2 cut(s) 161, 809
BshFI GGCC 3 cut(s) 114, 447, 515
BshNI GGYRCC 1 cut(s) 811
BshTI ACCGGT 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 465
BslFI GGGAC 4 cut(s) 552, 588, 865, 971
BslI CCNNNNNNNGG 4 cut(s) 533, 569, 605, 821
BsmAI GTCTC 3 cut(s) 15, 866, 888
BsmFI GGGAC 4 cut(s) 552, 588, 865, 971
BsnI GGCC 3 cut(s) 114, 447, 515
Bso31I GGTCTC 2 cut(s) 15, 888
Bsp119I TTCGAA 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 465
Bsp13I TCCGGA 2 cut(s) 218, 506
Bsp1720I GCTNAGC 1 cut(s) 800
Bsp19I CCATGG 1 cut(s) 261
BspANI GGCC 3 cut(s) 114, 447, 515
BspCNI CTCAG 2 cut(s) 25, 792
BspEI TCCGGA 2 cut(s) 218, 506
BspFNI CGCG 2 cut(s) 161, 809
BspHI TCATGA 2 cut(s) 324, 699
BspLI GGNNCC 3 cut(s) 115, 505, 813
BspMI ACCTGC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 487
BspT107I GGYRCC 1 cut(s) 811
BspTNI GGTCTC 2 cut(s) 15, 888
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 5 cut(s) 166, 235, 337, 564, 600
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 261, 532
BssHII GCGCGC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 6 cut(s) 37, 370, 554, 590, 626, 962
Bst6I CTCTTC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 161, 725, 934
BstDEI CTNAG 2 cut(s) 12, 800
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 6 cut(s) 117, 215, 297, 757, 986, 1041
BstFNI CGCG 2 cut(s) 161, 809
BstHHI GCGC 3 cut(s) 161, 163, 841
BstMAI GTCTC 3 cut(s) 15, 866, 888
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 4 cut(s) 532, 568, 604, 821
BstUI CGCG 2 cut(s) 161, 809
BstV2I GAAGAC 1 cut(s) 364
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 3 cut(s) 114, 447, 515
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 6 cut(s) 117, 215, 297, 757, 986, 1041
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 161, 725, 934
CciI TCATGA 2 cut(s) 324, 699
CfoI GCGC 3 cut(s) 161, 163, 841
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 2 cut(s) 113, 770
Csp6I GTAC 6 cut(s) 424, 498, 555, 591, 627, 682
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 7 cut(s) 178, 262, 283, 325, 700, 706, 1025
CviJI RGCY 9 cut(s) 114, 153, 307, 447, 463, 515, 531, 799, 804
CviKI_1 RGCY 9 cut(s) 114, 153, 307, 447, 463, 515, 531, 799, 804
CviQI GTAC 6 cut(s) 424, 498, 555, 591, 627, 682
DdeI CTNAG 2 cut(s) 12, 800
DrdI GACNNNNNNGTC 2 cut(s) 404, 880
DseDI GACNNNNNNGTC 2 cut(s) 404, 880
EaeI YGGCCR 2 cut(s) 445, 513
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EciI GGCGGA 3 cut(s) 161, 331, 651
Ecl136II GAGCTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 465
Eco31I GGTCTC 2 cut(s) 15, 888
Eco47I GGWCC 1 cut(s) 770
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 7 cut(s) 181, 265, 286, 328, 703, 709, 1028
FalI AAGNNNNNCTT 2 cut(s) 788, 820
FaqI GGGAC 4 cut(s) 552, 588, 865, 971
FatI CATG 7 cut(s) 177, 261, 282, 324, 699, 705, 1024
FauI CCCGC 2 cut(s) 286, 360
FblI GTMKAC 2 cut(s) 270, 396
Fnu4HI GCNGC 2 cut(s) 100, 112
FokI GGATG 5 cut(s) 104, 202, 284, 764, 973
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 2 cut(s) 100, 112
FspBI CTAG 2 cut(s) 735, 918
FspI TGCGCA 1 cut(s) 840
GlaI GCGC 3 cut(s) 160, 162, 840
GluI GCNGC 2 cut(s) 100, 112
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 3 cut(s) 114, 447, 515
HhaI GCGC 3 cut(s) 161, 163, 841
Hin1II CATG 7 cut(s) 181, 265, 286, 328, 703, 709, 1028
Hin6I GCGC 3 cut(s) 159, 161, 839
HinP1I GCGC 3 cut(s) 159, 161, 839
HincII GTYRAC 2 cut(s) 40, 397
HindII GTYRAC 2 cut(s) 40, 397
HinfI GANTC 3 cut(s) 398, 470, 686
HphI GGTGA 2 cut(s) 22, 703
Hpy166II GTNNAC 5 cut(s) 40, 271, 288, 397, 787
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 4 cut(s) 219, 325, 507, 700
Hpy8I GTNNAC 5 cut(s) 40, 271, 288, 397, 787
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 872
HpyCH4III ACNGT 6 cut(s) 37, 370, 554, 590, 626, 962
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 477, 723, 932, 1024
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 12, 800
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 7 cut(s) 181, 265, 286, 328, 703, 709, 1028
HspAI GCGC 3 cut(s) 159, 161, 839
Kpn2I TCCGGA 2 cut(s) 218, 506
LmnI GCTCC 3 cut(s) 194, 299, 395
LweI GCATC 2 cut(s) 995, 1026
MaeI CTAG 2 cut(s) 735, 918
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 455, 739
MboII GAAGA 3 cut(s) 193, 196, 364
MhlI GDGCHC 1 cut(s) 465
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 3 cut(s) 489, 910, 1042
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 2 cut(s) 392, 464
MmeI TCCRAC 1 cut(s) 387
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 2 cut(s) 218, 506
MscI TGGCCA 1 cut(s) 515
MseI TTAA 3 cut(s) 545, 581, 795
MslI CAYNNNNRTG 2 cut(s) 453, 704
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 947
MspR9I CCNGG 4 cut(s) 534, 570, 606, 823
MvnI CGCG 2 cut(s) 161, 809
MwoI GCNNNNNNNGC 1 cut(s) 108
NciI CCSGG 4 cut(s) 534, 570, 606, 823
NcoI CCATGG 1 cut(s) 261
NlaIII CATG 7 cut(s) 181, 265, 286, 328, 703, 709, 1028
NlaIV GGNNCC 3 cut(s) 115, 505, 813
NmuCI GTSAC 2 cut(s) 455, 739
NsbI TGCGCA 1 cut(s) 840
NspI RCATGY 1 cut(s) 181
NspV TTCGAA 1 cut(s) 487
OliI CACNNNNGTG 1 cut(s) 453
PagI TCATGA 2 cut(s) 324, 699
PalAI GGCGCGCC 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 299
PauI GCGCGC 1 cut(s) 159
PciI ACATGT 1 cut(s) 177
PcsI WCGNNNNNNNCGW 2 cut(s) 465, 493
PfeI GAWTC 1 cut(s) 686
PflFI GACNNNGTC 1 cut(s) 368
PfoI TCCNGGA 2 cut(s) 568, 604
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 2 cut(s) 101, 113
PleI GAGTC 2 cut(s) 392, 464
PpsI GAGTC 2 cut(s) 392, 464
PscI ACATGT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 527
PspN4I GGNNCC 3 cut(s) 115, 505, 813
PspPI GGNCC 2 cut(s) 113, 770
PsyI GACNNNGTC 1 cut(s) 368
PteI GCGCGC 1 cut(s) 159
RsaI GTAC 6 cut(s) 425, 499, 556, 592, 628, 683
RsaNI GTAC 6 cut(s) 424, 498, 555, 591, 627, 682
RseI CAYNNNNRTG 2 cut(s) 453, 704
SacI GAGCTC 1 cut(s) 465
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 3 cut(s) 545, 581, 795
SatI GCNGC 2 cut(s) 100, 112
Sau96I GGNCC 2 cut(s) 113, 770
SchI GAGTC 2 cut(s) 392, 464
ScrFI CCNGG 4 cut(s) 534, 570, 606, 823
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 2 cut(s) 995, 1026
SfuI TTCGAA 1 cut(s) 487
SgsI GGCGCGCC 1 cut(s) 159
SinI GGWCC 1 cut(s) 770
SmiMI CAYNNNNRTG 2 cut(s) 453, 704
Sse9I AATT 3 cut(s) 489, 910, 1042
SspMI CTAG 2 cut(s) 735, 918
SstI GAGCTC 1 cut(s) 465
StyD4I CCNGG 4 cut(s) 532, 568, 604, 821
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 6 cut(s) 37, 370, 554, 590, 626, 962
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 144, 396, 487
TasI AATT 3 cut(s) 489, 910, 1042
TauI GCSGC 2 cut(s) 102, 114
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 3 cut(s) 545, 581, 795
Tru9I TTAA 3 cut(s) 545, 581, 795
TseFI GTSAC 2 cut(s) 455, 739
Tsp45I GTSAC 2 cut(s) 455, 739
TspDTI ATGAA 2 cut(s) 688, 722
TspGWI ACGGA 3 cut(s) 382, 485, 764
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 2 cut(s) 489, 1042
XceI RCATGY 1 cut(s) 181
XmiI GTMKAC 2 cut(s) 270, 396
XspI CTAG 2 cut(s) 735, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.