Rh4CG290200

Wall-associated receptor kinase C-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013145
Physical Location & Seq
Forward (+)
54890909 .. 54892275
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG290200.1

Sequence Viewer

Length: 978 bp
ATGTTACATCACCTTTTCCTTCTCCTCCAGCTAGCTGCTGCTTCTTCTTCCTCTTCTTCACTCTCTTACTCTGTTCACACAAAAATGAGGTCTCTCTCAAAACCAGTCACCATCATCAACTTCATAGTAGTACTCCTCTCACAGCTCCCTACCCTAACTCTCTCCCAATGCCGCGACTCCTGCGGCGACATCCCCATAAAGTACCCTTTTGCCCTCGATGATGGCTGCGGCGCCCCGCAGTTCCGCCGCATGCTCAATTGCTCCACCGACCTCTTCTTCCTCACCCCCTCCGGCTCCTACAAAGTCGAGTCCATCAATTACGACAAGAAAACCATCGTCGTTTACGACCCCGCCATGTCCACCTGCTCCATCCTCCAGCCCCACCACGACTTCCTCATGACCGATATCCAGTCAGCCCTAATTCCCCCGACCTCTGACACCGTCTTTGCCCTCCTCAACTGCTCTATTGACTCCCCTGTCCTCAACCACTACAGTTACCTCTGCTTCAACTTCTCTTCTCACTCCTGCGACGAGCTCTACGGCTCGTGCAACGCGTTTAGGGTTTTCCACATGGTTGCCAACACTACTTCGCCGCCGTGCTGCTTTACAGGTTACGACACCGTTAAGTTCATGAGCATGAACATCTTGGACTGCACGCATTACACCACGGTGACGAACACGGATGAGTTGAGGGGGATTGGACCGCAGGATTGGGTTTATGGGATCAAGATGACCTTTGCCGTGCCGGATTCCGGTTGCAACAGGTGTGCGATGTCCGGTGGCACGTGCGGGTTTGATACAGAGACCGAAGGGGCACTATGTCTTTGCTCGAGTTCGTCGAATTATACTAGAGAATGTGCTGTAGGCAGTGTCACGGCGGGAGTGAACAACTGTGCAACCAGCAGCATATTCTTGCAATCAATTTTTGTGATCGTGTTGATCCATAATTTATTCAACCTAGTATTTTTGTCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

325

Amino Acids

35.61

Weight (kDa)

5.59

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 57 - 116 1e-13 Wall-associated receptor kinase galacturonan-binding
WAK_assoc PF14380 241 - 278 5.7e-06 Wall-associated receptor kinase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17350 AT3G17350
fragaria_vesca FvH4_4g21130
malus_domestica MD16G1139400.v1.1
prunus_persica Prupe.1G108900_v2.0.a1
pyrus_communis pycom16g12380
rosa_chinensis RchiOBHm_Chr4g0426711
rosa_laevigata RLG00000007284
rosa_multiflora Rmu_co8392541.1_g000001 Rmu_sc0010934.1_g000002 Rmu_sc0021908.1_g000002
rosa_roxburghii Rroxscaffold_5G00368680
rosa_rugosa Rorug04G0214400
rosa_samantha Rh4AG269400 Rh4BG275700 Rh4CG290200 Rh4DG272700
rosa_wichuraiana Rw4G023370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
AasI GACNNNNNNGTC 1 cut(s) 476
Acc36I ACCTGC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 230
AccII CGCG 2 cut(s) 174, 554
AclWI GGATC 2 cut(s) 731, 934
AcvI CACGTG 1 cut(s) 786
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 132, 203
AfiI CCNNNNNNNGG 1 cut(s) 752
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 2 cut(s) 508, 955
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 4 cut(s) 31, 35, 145, 535
AluI AGCT 4 cut(s) 31, 35, 145, 535
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 2 cut(s) 96, 797
AlwI GGATC 2 cut(s) 731, 934
Ama87I CYCGRG 1 cut(s) 829
ApeKI GCWGC 5 cut(s) 35, 38, 225, 600, 903
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 428, 460
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 701
AsuHPI GGTGA 3 cut(s) 100, 274, 682
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 829
AvaII GGWCC 1 cut(s) 701
BaeGI GKGCMC 1 cut(s) 817
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 537
BauI CACGAG 1 cut(s) 544
BbrPI CACGTG 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 5 cut(s) 22, 25, 212, 587, 915
BccI CCATC 5 cut(s) 119, 215, 320, 341, 377
BceAI ACGGC 4 cut(s) 556, 580, 725, 891
BcoDI GTCTC 2 cut(s) 96, 797
BfaI CTAG 3 cut(s) 32, 849, 959
BfmI CTRYAG 2 cut(s) 490, 861
BfoI RGCGCY 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 371
BmcAI AGTACT 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 1 cut(s) 829
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 2 cut(s) 232, 295
BmtI GCTAGC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 11, 359
BsaAI YACGTR 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 96, 797
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 2 cut(s) 752, 776
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 2 cut(s) 104, 409
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 3 cut(s) 189, 369, 688
BseLI CCNNNNNNNGG 1 cut(s) 752
BseNI ACTGG 2 cut(s) 104, 409
BseRI GAGGAG 3 cut(s) 14, 125, 443
BseSI GKGCMC 1 cut(s) 817
BseXI GCAGC 5 cut(s) 22, 25, 212, 587, 915
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 2 cut(s) 174, 554
BshNI GGYRCC 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 829
BsiSI CCGG 4 cut(s) 291, 746, 753, 777
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 2 cut(s) 96, 797
Bso31I GGTCTC 2 cut(s) 96, 797
BsoBI CYCGRG 1 cut(s) 829
Bsp1286I GDGCHC 2 cut(s) 537, 817
Bsp143I GATC 3 cut(s) 723, 930, 939
BspFNI CGCG 2 cut(s) 174, 554
BspHI TCATGA 2 cut(s) 396, 630
BspLI GGNNCC 2 cut(s) 232, 295
BspMI ACCTGC 1 cut(s) 371
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 731, 934
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 2 cut(s) 96, 797
BsrI ACTGG 2 cut(s) 104, 409
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 3 cut(s) 723, 930, 939
BssNI GRCGYC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 544
Bst2BI CACGAG 1 cut(s) 544
Bst4CI ACNGT 5 cut(s) 442, 494, 622, 670, 893
Bst6I CTCTTC 3 cut(s) 58, 278, 520
BstACI GRCGYC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 786
BstC8I GCNNGC 3 cut(s) 33, 251, 656
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 189, 369, 688
BstFNI CGCG 2 cut(s) 174, 554
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 726, 933, 942
BstMAI GTCTC 2 cut(s) 96, 797
BstMBI GATC 3 cut(s) 723, 930, 939
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 490, 861
BstSLI GKGCMC 1 cut(s) 817
BstUI CGCG 2 cut(s) 174, 554
BstV1I GCAGC 5 cut(s) 22, 25, 212, 587, 915
BtgI CCRYGG 1 cut(s) 666
BtgZI GCGATG 1 cut(s) 785
BtsCI GGATG 3 cut(s) 189, 369, 688
BtsI GCAGTG 1 cut(s) 874
BtsIMutI CAGTG 1 cut(s) 874
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 3 cut(s) 33, 251, 656
CciI TCATGA 2 cut(s) 396, 630
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 701
Csp6I GTAC 2 cut(s) 131, 202
CviAII CATG 6 cut(s) 250, 355, 397, 571, 631, 637
CviJI RGCY 9 cut(s) 31, 35, 145, 225, 294, 379, 416, 535, 543
CviKI_1 RGCY 9 cut(s) 31, 35, 145, 225, 294, 379, 416, 535, 543
CviQI GTAC 2 cut(s) 131, 202
DinI GGCGCC 1 cut(s) 232
DpnI GATC 3 cut(s) 725, 932, 941
DpnII GATC 3 cut(s) 723, 930, 939
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 3 cut(s) 58, 278, 520
EarI CTCTTC 3 cut(s) 58, 278, 520
EciI GGCGGA 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 537
Eco31I GGTCTC 2 cut(s) 96, 797
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 535
Eco72I CACGTG 1 cut(s) 786
Eco88I CYCGRG 1 cut(s) 829
EcoICRI GAGCTC 1 cut(s) 535
EcoRV GATATC 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 537
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
FaeI CATG 6 cut(s) 253, 358, 400, 574, 634, 640
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FatI CATG 6 cut(s) 249, 354, 396, 570, 630, 636
FauI CCCGC 4 cut(s) 243, 358, 782, 871
FokI GGATG 3 cut(s) 176, 356, 695
FriOI GRGCYC 1 cut(s) 537
FspBI CTAG 3 cut(s) 32, 849, 959
GlaI GCGC 1 cut(s) 232
GsuI CTGGAG 2 cut(s) 11, 359
HaeII RGCGCY 1 cut(s) 234
HapII CCGG 4 cut(s) 291, 746, 753, 777
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 6 cut(s) 253, 358, 400, 574, 634, 640
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 4 cut(s) 176, 308, 470, 749
HpaII CCGG 4 cut(s) 291, 746, 753, 777
HphI GGTGA 3 cut(s) 100, 274, 682
Hpy166II GTNNAC 4 cut(s) 76, 343, 360, 886
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 3 cut(s) 397, 631, 727
Hpy8I GTNNAC 4 cut(s) 76, 343, 360, 886
Hpy99I CGWCG 3 cut(s) 341, 533, 841
HpyAV CCTTC 2 cut(s) 29, 803
HpyCH4III ACNGT 5 cut(s) 442, 494, 622, 670, 893
HpyCH4IV ACGT 1 cut(s) 785
HpyCH4V TGCA 5 cut(s) 549, 654, 759, 896, 916
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 785
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 6 cut(s) 253, 358, 400, 574, 634, 640
HspAI GCGC 1 cut(s) 231
KasI GGCGCC 1 cut(s) 230
Kzo9I GATC 3 cut(s) 723, 930, 939
LmnI GCTCC 4 cut(s) 150, 266, 299, 371
Lsp1109I GCAGC 5 cut(s) 22, 25, 212, 587, 915
MaeI CTAG 3 cut(s) 32, 849, 959
MaeII ACGT 1 cut(s) 785
MaeIII GTNAC 6 cut(s) 3, 106, 494, 611, 670, 871
MalI GATC 3 cut(s) 725, 932, 941
MboI GATC 3 cut(s) 723, 930, 939
MboII GAAGA 7 cut(s) 36, 39, 45, 48, 265, 268, 507
MfeI CAATTG 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 537, 817
MluCI AATT 7 cut(s) 256, 316, 420, 841, 921, 946, 973
MluI ACGCGT 1 cut(s) 552
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 3 cut(s) 170, 317, 464
MseI TTAA 2 cut(s) 624, 976
MslI CAYNNNNRTG 3 cut(s) 83, 635, 668
MspI CCGG 4 cut(s) 291, 746, 753, 777
MunI CAATTG 1 cut(s) 256
MvnI CGCG 2 cut(s) 174, 554
MwoI GCNNNNNNNGC 1 cut(s) 180
NarI GGCGCC 1 cut(s) 231
NdeII GATC 3 cut(s) 723, 930, 939
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 6 cut(s) 253, 358, 400, 574, 634, 640
NlaIV GGNNCC 2 cut(s) 232, 295
NmuCI GTSAC 3 cut(s) 106, 670, 871
NspI RCATGY 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 668
PaeI GCATGC 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 829
PagI TCATGA 2 cut(s) 396, 630
PaqCI CACCTGC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 3 cut(s) 342, 551, 836
PfeI GAWTC 1 cut(s) 749
PflFI GACNNNGTC 1 cut(s) 440
PleI GAGTC 3 cut(s) 170, 316, 464
PluTI GGCGCC 1 cut(s) 234
PmaCI CACGTG 1 cut(s) 786
PmlI CACGTG 1 cut(s) 786
PpsI GAGTC 3 cut(s) 170, 316, 464
Ppu21I YACGTR 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 537
PspCI CACGTG 1 cut(s) 786
PspN4I GGNNCC 2 cut(s) 232, 295
PspPI GGNCC 1 cut(s) 701
PspXI VCTCGAGB 1 cut(s) 829
PsyI GACNNNGTC 1 cut(s) 440
RsaI GTAC 2 cut(s) 132, 203
RsaNI GTAC 2 cut(s) 131, 202
RseI CAYNNNNRTG 3 cut(s) 83, 635, 668
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 2 cut(s) 624, 976
Sau3AI GATC 3 cut(s) 723, 930, 939
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 132
SchI GAGTC 3 cut(s) 170, 317, 464
SduI GDGCHC 2 cut(s) 537, 817
SfcI CTRYAG 2 cut(s) 490, 861
SfoI GGCGCC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 829
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 829
SmiMI CAYNNNNRTG 3 cut(s) 83, 635, 668
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
SphI GCATGC 1 cut(s) 253
Sse9I AATT 7 cut(s) 256, 316, 420, 841, 921, 946, 973
SspDI GGCGCC 1 cut(s) 230
SspMI CTAG 3 cut(s) 32, 849, 959
SstI GAGCTC 1 cut(s) 537
TaaI ACNGT 5 cut(s) 442, 494, 622, 670, 893
TaiI ACGT 1 cut(s) 788
TaqI TCGA 4 cut(s) 216, 306, 830, 839
TaqII GACCGA 2 cut(s) 416, 821
TasI AATT 7 cut(s) 256, 316, 420, 841, 921, 946, 973
TatI WGTACW 1 cut(s) 130
TauI GCSGC 5 cut(s) 174, 186, 231, 249, 595
TfiI GAWTC 1 cut(s) 749
Tru1I TTAA 2 cut(s) 624, 976
Tru9I TTAA 2 cut(s) 624, 976
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 3 cut(s) 106, 670, 871
TseI GCWGC 5 cut(s) 35, 38, 225, 600, 903
Tsp45I GTSAC 3 cut(s) 106, 670, 871
TspDTI ATGAA 3 cut(s) 112, 619, 653
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 1 cut(s) 874
Tth111I GACNNNGTC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 701
XceI RCATGY 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 829
XspI CTAG 3 cut(s) 32, 849, 959
ZrmI AGTACT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.