AT3G17760

Belongs to the group II decarboxylase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6078727 .. 6081355
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17760.1

Sequence Viewer

Length: 1485 bp
ATGGTACTCGCAACCAACTCTGACTCCGACGAGCATTTGCATTCCACTTTTGCTTCTAGATATGTCCGTGCTGTTGTTCCCAGGTTCAAGATGCCTGACCATTGCATGCCCAAAGATGCTGCTTATCAAGTGATCAATGATGAGTTGATGCTTGATGGTAATCCCAGGCTTAACCTAGCCTCCTTTGTCACCACTTGGATGGAACCTGAGTGTGACAAACTCATCATGGATTCTGTCAATAAGAACTATGTTGATATGGATGAATATCCTGTCACCACTGAGCTCCAGAACCGGTGTGTAAATATGATAGCAAACTTGTTCCATGCTCCCGTTGGAGAAGACGAGGCTGCTATTGGGTGTGGAACTGTTGGTTCATCTGAGGCTATAATGCTTGCTGGTTTGGCTTTCAAAAGGAAATGGCAACATAGGAGAAAAGCTCAGGGTCTACCTATTGATAAGCCTAACATTGTCACTGGAGCCAATGTTCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTAGAGCTCAAAGAGGTGAAACTAAGTGAAGACTACTATGTTATGGATCCAGCTAAAGCTGTAGAGATGGTGGATGAGAATACCATCTGTGTTGCAGCAATTCTAGGATCCACACTTACTGGAGAGTTTGAGGACGTTAAGCAATTGAACGATCTCTTAGCTGAGAAAAACGCAGAGACAGGATGGGAAACTCCTATTCATGTTGATGCAGCCAGTGGAGGATTCATTGCTCCTTTCCTCTACCCTGATCTTGAATGGGACTTTAGGCTTCCATGGGTGAAGAGTATTAACGTCAGTGGTCACAAGTATGGACTTGTGTATGCAGGAGTTGGTTGGGTTGTCTGGAGAACAAAAGATGATTTGCCAGAGGAACTTGTCTTCCACATCAACTACTTGGGAGCTGATCAACCCACTTTCACTCTCAACTTCTCAAAAGGGTCGAGCCAAATCATTGCTCAGTACTATCAGTTTATCCGACTAGGCTTTGAGGGATACAAGAACATAATGGAAAACTGCATGGATAACGCAAGGAGGCTAAGAGAAGGAATAGAGATGACAGGGAAGTTCAACATTGTGTCCAAAGATATTGGCGTGCCACTAGTGGCATTCTCTCTCAAAGACAGTAGCAAGCACACGGTGTTTGAGATCGCAGAGTCTTTGAGAAAATTCGGGTGGATCATACCGGCTTACACTATGCCTGCAGATGCACAGCACATTGCTGTGCTCAGAGTTGTGATAAGAGAAGACTTTAGCCGAGGCCTTGCAGATAGACTCATCACACATATCATTCAGGTGCTGAAAGAGATTGAAGGGCTTCCTAGCAGGATTGCACATCTTGCTGCGGCTGCAGCGGTTAGTGGTGATGATGAAGAAGTTAAAGTGAAGACTGCCAAGATGTCCTTGGAGGATATCACTAAGTATTGGAAACGCCTTGTGGAACACAAGAGAAATATTGTCTGCTAA

Protein Analysis

494

Amino Acids

55.77

Weight (kDa)

5.42

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 32 - 380 1.1e-103 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 445
AciI CCGC 2 cut(s) 1364, 1373
AclWI GGATC 5 cut(s) 563, 576, 624, 637, 1205
AcsI RAATTY 1 cut(s) 1187
AdeI CACNNNGTG 1 cut(s) 1159
AfaI GTAC 3 cut(s) 6, 515, 983
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 6 cut(s) 88, 409, 670, 776, 1090, 1331
AhlI ACTAGT 1 cut(s) 1120
AjnI CCWGG 2 cut(s) 80, 164
AloI GAACNNNNNNTCC 4 cut(s) 468, 500, 885, 917
AluBI AGCT 7 cut(s) 283, 437, 529, 575, 581, 683, 923
AluI AGCT 7 cut(s) 283, 437, 529, 575, 581, 683, 923
Alw21I GWGCWC 3 cut(s) 285, 531, 1248
Alw26I GTCTC 1 cut(s) 692
AlwI GGATC 5 cut(s) 563, 576, 624, 637, 1205
AlwNI CAGNNNCTG 1 cut(s) 1318
AoxI GGCC 1 cut(s) 1279
ApeKI GCWGC 7 cut(s) 119, 347, 617, 731, 1361, 1367, 1370
ApoI RAATTY 1 cut(s) 1187
AsiGI ACCGGT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 1335
AsuHPI GGTGA 5 cut(s) 181, 265, 550, 811, 1394
BamHI GGATCC 2 cut(s) 568, 629
BanII GRGCYC 2 cut(s) 285, 531
BbsI GAAGAC 5 cut(s) 345, 558, 892, 1272, 1412
Bbv12I GWGCWC 3 cut(s) 285, 531, 1248
BbvI GCAGC 7 cut(s) 106, 334, 629, 743, 1348, 1354, 1382
BccI CCATC 5 cut(s) 149, 193, 583, 614, 699
BciT130I CCWGG 2 cut(s) 82, 166
BciVI GTATCC 1 cut(s) 1007
BclI TGATCA 2 cut(s) 132, 925
BcoDI GTCTC 1 cut(s) 692
BcuI ACTAGT 1 cut(s) 1120
BfaI CTAG 6 cut(s) 57, 176, 626, 1001, 1121, 1341
BfmI CTRYAG 3 cut(s) 582, 1221, 1368
BfuI GTATCC 1 cut(s) 1007
BisI GCNGC 8 cut(s) 120, 348, 618, 732, 1362, 1365, 1368, 1371
BlsI GCNGC 8 cut(s) 121, 349, 619, 733, 1363, 1366, 1369, 1372
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 2 cut(s) 82, 166
BmiI GGNNCC 4 cut(s) 204, 478, 570, 631
BmrFI CCNGG 2 cut(s) 82, 166
BmsI GCATC 5 cut(s) 81, 106, 138, 718, 1216
BpiI GAAGAC 5 cut(s) 345, 558, 892, 1272, 1412
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BpmI CTGGAG 4 cut(s) 269, 495, 663, 886
Bpu10I CCTNAGC 1 cut(s) 438
BsaBI GATNNNNATC 2 cut(s) 159, 264
BsaJI CCNNGG 5 cut(s) 80, 164, 794, 1276, 1422
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 6 cut(s) 8, 38, 164, 194, 468, 498
Bse118I RCCGGY 2 cut(s) 291, 1204
Bse1I ACTGG 3 cut(s) 478, 646, 735
Bse3DI GCAATG 4 cut(s) 100, 747, 972, 1236
Bse8I GATNNNNATC 2 cut(s) 159, 264
BseBI CCWGG 2 cut(s) 82, 166
BseDI CCNNGG 5 cut(s) 80, 164, 794, 1276, 1422
BseGI GGATG 4 cut(s) 204, 265, 601, 710
BseJI GATNNNNATC 2 cut(s) 159, 264
BseMI GCAATG 4 cut(s) 100, 747, 972, 1236
BseMII CTCAG 7 cut(s) 198, 270, 369, 452, 675, 992, 1261
BseNI ACTGG 3 cut(s) 478, 646, 735
BseXI GCAGC 7 cut(s) 106, 334, 629, 743, 1348, 1354, 1382
BseYI CCCAGC 1 cut(s) 495
BshFI GGCC 1 cut(s) 1281
BshTI ACCGGT 1 cut(s) 291
BsiHKAI GWGCWC 3 cut(s) 285, 531, 1248
BsiSI CCGG 2 cut(s) 292, 1205
BslFI GGGAC 1 cut(s) 794
BsmAI GTCTC 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 2 cut(s) 40, 1127
BsnI GGCC 1 cut(s) 1281
Bsp1286I GDGCHC 3 cut(s) 285, 531, 1248
Bsp143I GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
Bsp19I CCATGG 1 cut(s) 794
BspACI CCGC 2 cut(s) 1364, 1373
BspANI GGCC 1 cut(s) 1281
BspCNI CTCAG 7 cut(s) 199, 271, 370, 451, 676, 991, 1260
BspLI GGNNCC 4 cut(s) 204, 478, 570, 631
BspMAI CTGCAG 2 cut(s) 1225, 1372
BspPI GGATC 5 cut(s) 563, 576, 624, 637, 1205
BsrDI GCAATG 4 cut(s) 100, 747, 972, 1236
BsrFI RCCGGY 2 cut(s) 291, 1204
BsrI ACTGG 3 cut(s) 478, 646, 735
BssAI RCCGGY 2 cut(s) 291, 1204
BssECI CCNNGG 5 cut(s) 80, 164, 794, 1276, 1422
BssMI GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
BssT1I CCWWGG 2 cut(s) 794, 1422
Bst2UI CCWGG 2 cut(s) 82, 166
Bst4CI ACNGT 3 cut(s) 367, 1145, 1159
Bst6I CTCTTC 1 cut(s) 797
BstAPI GCANNNNNTGC 1 cut(s) 1358
BstC8I GCNNGC 5 cut(s) 107, 393, 1115, 1151, 1221
BstDSI CCRYGG 1 cut(s) 794
BstF5I GGATG 4 cut(s) 204, 265, 601, 710
BstKTI GATC 8 cut(s) 135, 571, 632, 676, 772, 928, 1170, 1200
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
BstMWI GCNNNNNNNGC 4 cut(s) 401, 1358, 1367, 1370
BstNI CCWGG 2 cut(s) 82, 166
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 80, 164
BstSFI CTRYAG 3 cut(s) 582, 1221, 1368
BstV1I GCAGC 7 cut(s) 106, 334, 629, 743, 1348, 1354, 1382
BstV2I GAAGAC 5 cut(s) 345, 558, 892, 1272, 1412
BstX2I RGATCY 2 cut(s) 568, 629
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 2 cut(s) 568, 629
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 1 cut(s) 1281
BtgI CCRYGG 1 cut(s) 794
BtsCI GGATG 4 cut(s) 204, 265, 601, 710
BtsIMutI CAGTG 4 cut(s) 276, 471, 742, 823
Cac8I GCNNGC 5 cut(s) 107, 393, 1115, 1151, 1221
CaiI CAGNNNCTG 1 cut(s) 1318
Cfr10I RCCGGY 2 cut(s) 291, 1204
Csp6I GTAC 3 cut(s) 5, 514, 982
CspAI ACCGGT 1 cut(s) 291
CviAII CATG 6 cut(s) 106, 226, 323, 722, 795, 1039
CviQI GTAC 3 cut(s) 5, 514, 982
DpnI GATC 8 cut(s) 134, 570, 631, 675, 771, 927, 1169, 1199
DpnII GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
DraIII CACNNNGTG 1 cut(s) 1159
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Ecl136II GAGCTC 2 cut(s) 283, 529
Eco130I CCWWGG 2 cut(s) 794, 1422
Eco147I AGGCCT 1 cut(s) 1281
Eco24I GRGCYC 2 cut(s) 285, 531
Eco32I GATATC 1 cut(s) 1432
Eco53kI GAGCTC 2 cut(s) 283, 529
EcoICRI GAGCTC 2 cut(s) 283, 529
EcoRII CCWGG 2 cut(s) 80, 164
EcoRV GATATC 1 cut(s) 1432
EcoT14I CCWWGG 2 cut(s) 794, 1422
EcoT38I GRGCYC 2 cut(s) 285, 531
ErhI CCWWGG 2 cut(s) 794, 1422
FaeI CATG 6 cut(s) 109, 229, 326, 725, 798, 1042
FalI AAGNNNNNCTT 2 cut(s) 1406, 1438
FaqI GGGAC 1 cut(s) 794
FatI CATG 6 cut(s) 105, 225, 322, 721, 794, 1038
FbaI TGATCA 2 cut(s) 132, 925
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 8 cut(s) 120, 348, 618, 732, 1362, 1365, 1368, 1371
FokI GGATG 4 cut(s) 211, 272, 608, 717
FriOI GRGCYC 2 cut(s) 285, 531
Fsp4HI GCNGC 8 cut(s) 120, 348, 618, 732, 1362, 1365, 1368, 1371
FspBI CTAG 6 cut(s) 57, 176, 626, 1001, 1121, 1341
GluI GCNGC 8 cut(s) 120, 348, 618, 732, 1362, 1365, 1368, 1371
GsaI CCCAGC 1 cut(s) 499
GsuI CTGGAG 4 cut(s) 269, 495, 663, 886
HaeIII GGCC 1 cut(s) 1281
HapII CCGG 2 cut(s) 292, 1205
Hin1II CATG 6 cut(s) 109, 229, 326, 725, 798, 1042
HinfI GANTC 5 cut(s) 23, 230, 744, 1175, 1293
HpaII CCGG 2 cut(s) 292, 1205
HphI GGTGA 5 cut(s) 181, 265, 550, 811, 1394
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 5 cut(s) 22, 28, 379, 998, 1250
Hpy188III TCNNGA 5 cut(s) 57, 88, 286, 773, 865
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 1058, 1325
HpyCH4III ACNGT 3 cut(s) 367, 1145, 1159
HpyCH4IV ACGT 2 cut(s) 657, 813
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 1358, 1367, 1370
HpySE526I ACGT 2 cut(s) 657, 813
Hsp92II CATG 6 cut(s) 109, 229, 326, 725, 798, 1042
Ksp22I TGATCA 2 cut(s) 132, 925
Kzo9I GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
LmnI GCTCC 5 cut(s) 288, 331, 476, 757, 920
Lsp1109I GCAGC 7 cut(s) 106, 334, 629, 743, 1348, 1354, 1382
LweI GCATC 5 cut(s) 81, 106, 138, 718, 1216
MaeI CTAG 6 cut(s) 57, 176, 626, 1001, 1121, 1341
MaeII ACGT 2 cut(s) 657, 813
MaeIII GTNAC 5 cut(s) 187, 212, 271, 469, 821
MalI GATC 8 cut(s) 134, 570, 631, 675, 771, 927, 1169, 1199
MboI GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
MboII GAAGA 7 cut(s) 350, 563, 814, 892, 1277, 1403, 1417
MfeI CAATTG 1 cut(s) 665
MflI RGATCY 2 cut(s) 568, 629
MhlI GDGCHC 3 cut(s) 285, 531, 1248
MluCI AATT 3 cut(s) 621, 665, 1187
MlyI GAGTC 3 cut(s) 17, 1184, 1287
MmeI TCCRAC 3 cut(s) 51, 313, 1021
MroXI GAANNNNTTC 1 cut(s) 1335
MseI TTAA 4 cut(s) 171, 660, 810, 1398
MslI CAYNNNNRTG 5 cut(s) 197, 726, 828, 1241, 1313
MspA1I CMGCKG 1 cut(s) 1373
MspI CCGG 2 cut(s) 292, 1205
MspR9I CCNGG 2 cut(s) 82, 166
MunI CAATTG 1 cut(s) 665
Mva1269I GAATGC 2 cut(s) 40, 1127
MvaI CCWGG 2 cut(s) 82, 166
MwoI GCNNNNNNNGC 4 cut(s) 401, 1358, 1367, 1370
NcoI CCATGG 1 cut(s) 794
NdeII GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
NlaIII CATG 6 cut(s) 109, 229, 326, 725, 798, 1042
NlaIV GGNNCC 4 cut(s) 204, 478, 570, 631
NmeAIII GCCGAG 1 cut(s) 1301
NmuCI GTSAC 5 cut(s) 187, 212, 271, 469, 821
NspI RCATGY 1 cut(s) 109
PaeI GCATGC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 1281
PctI GAATGC 2 cut(s) 40, 1127
PdmI GAANNNNTTC 1 cut(s) 1335
PfeI GAWTC 2 cut(s) 230, 744
PinAI ACCGGT 1 cut(s) 291
PkrI GCNGC 8 cut(s) 121, 349, 619, 733, 1363, 1366, 1369, 1372
PleI GAGTC 3 cut(s) 17, 1183, 1287
PpsI GAGTC 3 cut(s) 17, 1183, 1287
Psp124BI GAGCTC 2 cut(s) 285, 531
Psp6I CCWGG 2 cut(s) 80, 164
PspFI CCCAGC 1 cut(s) 495
PspGI CCWGG 2 cut(s) 80, 164
PspN4I GGNNCC 4 cut(s) 204, 478, 570, 631
PstI CTGCAG 2 cut(s) 1225, 1372
PstNI CAGNNNCTG 1 cut(s) 1318
PsuI RGATCY 2 cut(s) 568, 629
RsaI GTAC 3 cut(s) 6, 515, 983
RsaNI GTAC 3 cut(s) 5, 514, 982
RseI CAYNNNNRTG 5 cut(s) 197, 726, 828, 1241, 1313
SacI GAGCTC 2 cut(s) 285, 531
SaqAI TTAA 4 cut(s) 171, 660, 810, 1398
SatI GCNGC 8 cut(s) 120, 348, 618, 732, 1362, 1365, 1368, 1371
Sau3AI GATC 8 cut(s) 132, 568, 629, 673, 769, 925, 1167, 1197
ScaI AGTACT 1 cut(s) 983
SchI GAGTC 3 cut(s) 17, 1184, 1287
ScrFI CCNGG 2 cut(s) 82, 166
SduI GDGCHC 3 cut(s) 285, 531, 1248
SfaNI GCATC 5 cut(s) 81, 106, 138, 718, 1216
SfcI CTRYAG 3 cut(s) 582, 1221, 1368
SmiMI CAYNNNNRTG 5 cut(s) 197, 726, 828, 1241, 1313
SpeI ACTAGT 1 cut(s) 1120
SphI GCATGC 1 cut(s) 109
Sse9I AATT 3 cut(s) 621, 665, 1187
SseBI AGGCCT 1 cut(s) 1281
SsiI CCGC 2 cut(s) 1364, 1373
SspI AATATT 1 cut(s) 1474
SspMI CTAG 6 cut(s) 57, 176, 626, 1001, 1121, 1341
SstI GAGCTC 2 cut(s) 285, 531
StuI AGGCCT 1 cut(s) 1281
StyD4I CCNGG 2 cut(s) 80, 164
StyI CCWWGG 2 cut(s) 794, 1422
TaaI ACNGT 3 cut(s) 367, 1145, 1159
TaiI ACGT 2 cut(s) 660, 816
TaqI TCGA 1 cut(s) 962
TasI AATT 3 cut(s) 621, 665, 1187
TatI WGTACW 1 cut(s) 981
TauI GCSGC 1 cut(s) 1367
TfiI GAWTC 2 cut(s) 230, 744
Tru1I TTAA 4 cut(s) 171, 660, 810, 1398
Tru9I TTAA 4 cut(s) 171, 660, 810, 1398
TscAI CASTG 4 cut(s) 283, 478, 742, 823
TseFI GTSAC 5 cut(s) 187, 212, 271, 469, 821
TseI GCWGC 7 cut(s) 119, 347, 617, 731, 1361, 1367, 1370
Tsp45I GTSAC 5 cut(s) 187, 212, 271, 469, 821
TspDTI ATGAA 5 cut(s) 276, 363, 710, 736, 1404
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 4 cut(s) 283, 478, 742, 823
XapI RAATTY 1 cut(s) 1187
XbaI TCTAGA 1 cut(s) 56
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 2 cut(s) 329, 1420
XmiI GTMKAC 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 1335
XspI CTAG 6 cut(s) 57, 176, 626, 1001, 1121, 1341
ZrmI AGTACT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.