Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006000

Physical Location & Seq

Genomic Coordinates Forward (+)

641223 .. 642059

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGATAGCCAATCTTTTTAATGCACCACTCAAAGACGGCGAGGCTGCGACCGGAACGGGAACAGTAGGATCATCGGAGGCCATAATGCTGGCGGGCCTTGCATTCAAGAGGAAGTGGCAGAACAAGATGAAGGCTATCGGCAAACCCTATGACAAGCCCAACATAGTCACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAAGTAGAACTGAAGGAAGTGAAAGTGAGGGAAGACTATTATGTAATGGACCCCGTCAAGGCTGTGGAGATGGTGGATGAAAACACCATCTGCGTTGCTGCCATCTTGGGATCCACTTACAATGGCGAATTCGAAGATGTCAAGCTCTTGAACGATCTTTTGATGGAAAAGAACAAGCAAACTGGATGGGACACTCCGATTCATGTTGATGCGGCGAGCGGTGGGTTCATCGCACCTTTCTTGTACCCTGATCTTGAATGGGACTTCCGTCTTCCACTGGTGAAGAGCATCAATGTGAGCGGTCATAAGTATGGCCTTGTTTACGCTGGAATTGGGTGGATTGTTTGGAGGAGCAAACAGGACTTGCCTGAAGACCTAATCTTCCACATCAATTACCTTGGAGCTGACCAGCCCACCTTCACCCTCAATTTCTCCAAAGGGTCTAGTCAGGTTCTTGCTCAATATTATCAGCTCATCCGACTTGGTTTTGAGGTGAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004351 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0016829 GO:0016830 GO:0016831 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

240

Amino Acids

26.9

Weight (kDa)

5.49

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17760 AT3G17760
fragaria_vesca	FvH4_4g35930 FvH4_5g18010
malus_domestica	MD06G1235500.v1.1 MD16G1010800.v1.1
prunus_persica	Prupe.1G339900_v2.0.a1 Prupe.5G240300_v2.0.a1
pyrus_communis	pycom06g21060 pycom16g01050
rosa_chinensis	RchiOBHm_Chr4g0406101 RchiOBHm_Chr4g0445561 RchiOBHm_Chr7g0177601
rosa_laevigata	RLG00000005522 RLG00000005730
rosa_multiflora	Rmu_ssc0000253.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386030
rosa_rugosa	Rorug04G0362500 Rorug06G0407700
rosa_samantha	Rh4AG423900 Rh4BG435900 Rh4CG450600 Rh4DG432300 Rh7AG007000 Rh7DG007100
rosa_wichuraiana	Rw4G036330 Rw7G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccBSI	CCGCTC	2 cut(s)	435, 516
AciI	CCGC	4 cut(s)	92, 428, 435, 516
AclWI	GGATC	3 cut(s)	76, 321, 334
AcsI	RAATTY	2 cut(s)	200, 344
AcuI	CTGAAG	2 cut(s)	248, 606
AfaI	GTAC	2 cut(s)	212, 461
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	106, 218, 367, 473
AluBI	AGCT	3 cut(s)	361, 620, 688
AluI	AGCT	3 cut(s)	361, 620, 688
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	3 cut(s)	76, 321, 334
AoxI	GGCC	3 cut(s)	78, 94, 529
ApeKI	GCWGC	2 cut(s)	44, 314
ApoI	RAATTY	2 cut(s)	200, 344
AspS9I	GGNCC	2 cut(s)	94, 265
AsuHPI	GGTGA	2 cut(s)	508, 628
AsuII	TTCGAA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	3 cut(s)	255, 479, 594
BbvI	GCAGC	2 cut(s)	31, 301
BccI	CCATC	5 cut(s)	280, 311, 326, 373, 396
BceAI	ACGGC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	1 cut(s)	660
BisI	GCNGC	3 cut(s)	45, 315, 429
BlsI	GCNGC	3 cut(s)	46, 316, 430
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	94, 265
BmiI	GGNNCC	3 cut(s)	175, 267, 328
BmsI	GCATC	2 cut(s)	415, 513
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	3 cut(s)	255, 479, 594
Bpu14I	TTCGAA	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	613
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	3 cut(s)	175, 403, 498
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	3 cut(s)	298, 407, 690
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseNI	ACTGG	3 cut(s)	175, 403, 498
BseRI	GAGGAG	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	31, 301
BseYI	CCCAGC	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	80, 96, 531
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	419, 491
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	2 cut(s)	419, 491
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	80, 96, 531
Bsp119I	TTCGAA	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	68, 326, 370, 466
BspACI	CCGC	4 cut(s)	92, 428, 435, 516
BspANI	GGCC	3 cut(s)	80, 96, 531
BspLI	GGNNCC	3 cut(s)	175, 267, 328
BspPI	GGATC	3 cut(s)	76, 321, 334
BspQI	GCTCTTC	1 cut(s)	494
BspT104I	TTCGAA	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	173
BsrBI	CCGCTC	2 cut(s)	435, 516
BsrI	ACTGG	3 cut(s)	175, 403, 498
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	4 cut(s)	68, 326, 370, 466
BssT1I	CCWWGG	1 cut(s)	613
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	494
BstBI	TTCGAA	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	90, 94, 433
BstF5I	GGATG	3 cut(s)	298, 407, 690
BstKTI	GATC	4 cut(s)	71, 329, 373, 469
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	4 cut(s)	68, 326, 370, 466
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstPAI	GACNNNNGTC	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	31, 301
BstV2I	GAAGAC	3 cut(s)	255, 479, 594
BstX2I	RGATCY	1 cut(s)	326
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	80, 96, 531
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	298, 407, 690
BtsIMutI	CAGTG	2 cut(s)	168, 491
Cac8I	GCNNGC	3 cut(s)	90, 94, 433
Cfr13I	GGNCC	2 cut(s)	94, 265
Csp6I	GTAC	2 cut(s)	211, 460
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	2 cut(s)	211, 460
DpnI	GATC	4 cut(s)	70, 328, 372, 468
DpnII	GATC	4 cut(s)	68, 326, 370, 466
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Eco130I	CCWWGG	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	248, 606
EcoRI	GAATTC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	1 cut(s)	422
FaiI	YATR	7 cut(s)	83, 150, 164, 258, 420, 522, 528
FaqI	GGGAC	2 cut(s)	419, 491
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	45, 315, 429
FokI	GGATG	3 cut(s)	305, 414, 677
Fsp4HI	GCNGC	3 cut(s)	45, 315, 429
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	3 cut(s)	45, 315, 429
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	80, 96, 531
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	1 cut(s)	422
HinfI	GANTC	2 cut(s)	415, 714
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	2 cut(s)	508, 628
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	3 cut(s)	76, 414, 695
Hpy188III	TCNNGA	3 cut(s)	106, 364, 470
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	3 cut(s)	124, 223, 643
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	23, 101, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	422
Kzo9I	GATC	4 cut(s)	68, 326, 370, 466
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	567, 617
Lsp1109I	GCAGC	2 cut(s)	31, 301
LweI	GCATC	2 cut(s)	415, 513
MaeI	CTAG	1 cut(s)	660
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	4 cut(s)	70, 328, 372, 468
MbiI	CCGCTC	2 cut(s)	435, 516
MboI	GATC	4 cut(s)	68, 326, 370, 466
MboII	GAAGA	6 cut(s)	260, 362, 479, 511, 589, 599
MflI	RGATCY	1 cut(s)	326
MluCI	AATT	5 cut(s)	200, 344, 546, 607, 643
MlyI	GAGTC	1 cut(s)	708
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	7 cut(s)	34, 70, 102, 237, 558, 650, 700
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	3 cut(s)	423, 509, 525
MspI	CCGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	4 cut(s)	68, 326, 370, 466
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	3 cut(s)	175, 267, 328
NmuCI	GTSAC	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	494
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	415
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	46, 316, 430
PleI	GAGTC	1 cut(s)	708
PpsI	GAGTC	1 cut(s)	708
PshAI	GACNNNNGTC	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	175, 267, 328
PspPI	GGNCC	2 cut(s)	94, 265
PsuI	RGATCY	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	212, 461
RsaNI	GTAC	2 cut(s)	211, 460
RseI	CAYNNNNRTG	3 cut(s)	423, 509, 525
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	3 cut(s)	45, 315, 429
Sau3AI	GATC	4 cut(s)	68, 326, 370, 466
Sau96I	GGNCC	2 cut(s)	94, 265
SchI	GAGTC	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	415, 513
SfuI	TTCGAA	1 cut(s)	348
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	3 cut(s)	423, 509, 525
Sse9I	AATT	5 cut(s)	200, 344, 546, 607, 643
SsiI	CCGC	4 cut(s)	92, 428, 435, 516
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	613
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	348
TasI	AATT	5 cut(s)	200, 344, 546, 607, 643
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	175, 498
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	44, 314
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	143, 309, 407, 433
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	175, 498
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	2 cut(s)	200, 344
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.