Prupe.5G240300_v2.0.a1

Belongs to the group II decarboxylase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
18114254 .. 18117550
3297 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G240300.1

Sequence Viewer

Length: 1512 bp
ATGGTGATCTCAACGACGAGCAGCGAGCGTGGAGGGCAGGTGAACTCTACGTTTGCATCGAGATATGTGCGTAACGCCCTCCCTAAGTTCGAGATGCCGGAGACGTCGATACCCAAGGACGCAGCGTATCAGATAATAAAGGATGAGCTAATGCTGGATGGGAACCCCAGGCTCAACTTGGCATCATTTGTCACGACGTGGATGGAGCCAGAGTGCGATCAGCTCATCATGGCCTCCCTCAACAAAAACTACGTCGACATGGATGAGTACCCTGTTACCACTGAACTCCAGAATCGTTGTGTGAATATAATAGCAAACCTTTTTAATGCTCCCCTTGGAGACGGCGAAACTGCTGTTGGAGTGGGAACTGTTGGTTCTTCAGAGGCAATGATGTTGGCAGGCCTAGCTTTTAAACGAAAGTGGCAGCAAAAGAGAAAAGCAGAGGGCAAGCCTTACGATAAGCCCAACATGGTCACCGGATCCAATGTGCAGGTATGCTGGGAAAAGTTTGCGAGGTATTTTGAGGTTGATCTCAAGGAGGTGAAGCTGTCAGAGGGATACTATGTAATGGACCCTGTGAAAGCAGTTGAGATGGTGGATGAGAACACTATCTGTGTTGCAGCTATTTTAGGATCAACTCTGACGGGAGAATTTGAAGATGTGAAGCTCCTCAATGATCTCCTTACTCAAAAGAACAAAGAGAAGGGCTGGGATACTCCCATTCATGTGGATGCTGCGAGCGGAGGCTTTATAGCTCCATTTCTTTATCCTGATCTTGTGTGGGATTTCCGTTTGCCCTTAGTCAAGAGTATCAATGTAAGTGGCCACAAGTATGGCCTTGTATATGCTGGTGTTGGCTGGGTTGTATGGAGGAGCAAAGAGGACTTGCCGGACGAGCTTGTCTTTCACATCAATTACCTTGGATCTGACCAGCCCACTTTCACCCTTAACTTTTCTAAAGGTTCTAGCCAAATAATTGCTCAGTATTATCAGTTTATTCGACTGGGTTTTGAGGGTTACAAAAATGTCATGGAAAACTGCATGGAGAACACAAGATTTCTGAGAGAAGGATTAGAGAAAACAGGGCGGTTTGAAATTGTCTCCAAAGACATAGGAGTGCCCCTTGTGGCATTTTCTCTAAAAGACAGCAGCAAGCACACCGTGTTCGAGATATCGGATAGTTTGAGAAAGTTTGGGTGGATAGTTCCAGCCTATACGATGCCAGCCAATGCAGAACATATTGCTGTTCTGCGAGTGGTTGTTAGGGAGGATTTTAGCCGGGGTTTGGCTGAGAGGCTTATCTCGGACATTATCAAAGTTGTGAAGGAAACAGACACACTCCCAAGCCGAATCTCTACGAAAACCGCCCATGTCACAGCTACTGTTGATGAAATGGCCCGTAGCAGTGAGGGGGCGGTGAAGCCTGCTAAGAAGAGTGTAGAAGAGATCGAACAAGAGATTACAAGGCGTTGGAAGGGGCTTGTGGATGGCAAGAAAAGAGGCGTATGCTAA

Protein Analysis

504

Amino Acids

56.43

Weight (kDa)

5.77

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
AasI GACNNNNNNGTC 1 cut(s) 899
AatII GACGTC 1 cut(s) 107
Acc36I ACCTGC 2 cut(s) 28, 481
AccBSI CCGCTC 1 cut(s) 741
AccI GTMKAC 1 cut(s) 255
AciI CCGC 4 cut(s) 741, 1087, 1365, 1415
AclWI GGATC 4 cut(s) 474, 487, 640, 931
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 104
AdeI CACNNNGTG 2 cut(s) 198, 1162
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 1285
AgsI TTSAA 2 cut(s) 656, 1094
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 339, 371
AluBI AGCT 9 cut(s) 148, 223, 407, 547, 623, 667, 755, 898, 1379
AluI AGCT 9 cut(s) 148, 223, 407, 547, 623, 667, 755, 898, 1379
Alw26I GTCTC 3 cut(s) 95, 333, 1105
AlwI GGATC 4 cut(s) 474, 487, 640, 931
AlwNI CAGNNNCTG 1 cut(s) 1382
AoxI GGCC 5 cut(s) 231, 400, 823, 835, 1395
ApeKI GCWGC 6 cut(s) 21, 122, 424, 620, 734, 1149
ApoI RAATTY 1 cut(s) 650
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspS9I GGNCC 2 cut(s) 571, 1396
AsuC2I CCSGG 1 cut(s) 1280
AsuHPI GGTGA 6 cut(s) 16, 52, 466, 553, 934, 1429
AvaII GGWCC 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 1122
BalI TGGCCA 1 cut(s) 825
BamHI GGATCC 1 cut(s) 479
BbvI GCAGC 6 cut(s) 33, 134, 436, 632, 721, 1161
BccI CCATC 4 cut(s) 152, 196, 586, 1481
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 169
BciVI GTATCC 2 cut(s) 551, 706
BcnI CCSGG 1 cut(s) 1280
BcoDI GTCTC 3 cut(s) 95, 333, 1105
BfaI CTAG 2 cut(s) 404, 966
BfuAI ACCTGC 2 cut(s) 28, 481
BfuI GTATCC 2 cut(s) 551, 706
BisI GCNGC 6 cut(s) 22, 123, 425, 621, 735, 1150
BlsI GCNGC 6 cut(s) 23, 124, 426, 622, 736, 1151
Bme1390I CCNGG 2 cut(s) 169, 1280
Bme18I GGWCC 1 cut(s) 571
BmgBI CACGTC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 571, 1396
BmiI GGNNCC 4 cut(s) 164, 207, 481, 573
BmrFI CCNGG 2 cut(s) 169, 1280
BmrI ACTGGG 1 cut(s) 1013
BmsI GCATC 5 cut(s) 65, 84, 191, 721, 1209
BmuI ACTGGG 1 cut(s) 1013
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 1280
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 5 cut(s) 114, 167, 334, 919, 1279
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 197, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 1285
Bse1I ACTGG 1 cut(s) 1008
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 5 cut(s) 114, 167, 334, 919, 1279
BseGI GGATG 7 cut(s) 148, 163, 207, 268, 604, 736, 1492
BseLI CCNNNNNNNGG 1 cut(s) 1285
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 3 cut(s) 995, 1052, 1281
BseNI ACTGG 1 cut(s) 1008
BseRI GAGGAG 2 cut(s) 659, 886
BseSI GKGCMC 1 cut(s) 1122
BseXI GCAGC 6 cut(s) 33, 134, 436, 632, 721, 1161
BseYI CCCAGC 3 cut(s) 498, 708, 858
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 5 cut(s) 233, 402, 825, 837, 1397
BsiSI CCGG 4 cut(s) 98, 477, 890, 1279
BslI CCNNNNNNNGG 1 cut(s) 1285
BsmAI GTCTC 3 cut(s) 95, 333, 1105
BsmBI CGTCTC 2 cut(s) 95, 333
BsnI GGCC 5 cut(s) 233, 402, 825, 837, 1397
Bsp1286I GDGCHC 1 cut(s) 1122
Bsp143I GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
BspACI CCGC 4 cut(s) 741, 1087, 1365, 1415
BspANI GGCC 5 cut(s) 233, 402, 825, 837, 1397
BspCNI CTCAG 3 cut(s) 994, 1053, 1282
BspLI GGNNCC 4 cut(s) 164, 207, 481, 573
BspMI ACCTGC 2 cut(s) 28, 481
BspPI GGATC 4 cut(s) 474, 487, 640, 931
BsrBI CCGCTC 1 cut(s) 741
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 1008
BssECI CCNNGG 5 cut(s) 114, 167, 334, 919, 1279
BssMI GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 3 cut(s) 114, 334, 919
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 3 cut(s) 370, 1162, 1384
Bst6I CTCTTC 2 cut(s) 1427, 1437
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 7 cut(s) 26, 400, 449, 739, 1154, 1224, 1425
BstDEI CTNAG 6 cut(s) 84, 799, 981, 1061, 1290, 1428
BstEII GGTNACC 1 cut(s) 472
BstF5I GGATG 7 cut(s) 148, 163, 207, 268, 604, 736, 1492
BstKTI GATC 9 cut(s) 9, 220, 482, 532, 635, 679, 775, 926, 1449
BstMAI GTCTC 3 cut(s) 95, 333, 1105
BstMBI GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
BstMWI GCNNNNNNNGC 3 cut(s) 34, 404, 895
BstNI CCWGG 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 167, 1278
BstSLI GKGCMC 1 cut(s) 1122
BstV1I GCAGC 6 cut(s) 33, 134, 436, 632, 721, 1161
BstX2I RGATCY 2 cut(s) 479, 923
BstXI CCANNNNNNTGG 2 cut(s) 727, 833
BstYI RGATCY 2 cut(s) 479, 923
BsuI GTATCC 2 cut(s) 551, 706
BsuRI GGCC 5 cut(s) 233, 402, 825, 837, 1397
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 7 cut(s) 148, 163, 207, 268, 604, 736, 1492
BtsI GCAGTG 1 cut(s) 1411
BtsIMutI CAGTG 2 cut(s) 279, 1411
BveI ACCTGC 2 cut(s) 28, 481
Cac8I GCNNGC 7 cut(s) 26, 400, 449, 739, 1154, 1224, 1425
CaiI CAGNNNCTG 1 cut(s) 1382
Cfr13I GGNCC 2 cut(s) 571, 1396
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 268
CspCI CAANNNNNGTGG 2 cut(s) 802, 837
CviAII CATG 7 cut(s) 229, 259, 469, 725, 1030, 1042, 1370
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 6 cut(s) 84, 799, 981, 1061, 1290, 1428
DpnI GATC 9 cut(s) 8, 219, 481, 531, 634, 678, 774, 925, 1448
DpnII GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
DraI TTTAAA 1 cut(s) 412
DraIII CACNNNGTG 2 cut(s) 198, 1162
DrdI GACNNNNNNGTC 1 cut(s) 899
DseDI GACNNNNNNGTC 1 cut(s) 899
EaeI YGGCCR 1 cut(s) 823
Eam1104I CTCTTC 2 cut(s) 1427, 1437
EarI CTCTTC 2 cut(s) 1427, 1437
Eco130I CCWWGG 3 cut(s) 114, 334, 919
Eco147I AGGCCT 1 cut(s) 402
Eco32I GATATC 1 cut(s) 1173
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 1173
EcoT14I CCWWGG 3 cut(s) 114, 334, 919
ErhI CCWWGG 3 cut(s) 114, 334, 919
Esp3I CGTCTC 2 cut(s) 95, 333
FaeI CATG 7 cut(s) 232, 262, 472, 728, 1033, 1045, 1373
FatI CATG 7 cut(s) 228, 258, 468, 724, 1029, 1041, 1369
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 6 cut(s) 22, 123, 425, 621, 735, 1150
FokI GGATG 7 cut(s) 155, 170, 214, 275, 611, 743, 1499
Fsp4HI GCNGC 6 cut(s) 22, 123, 425, 621, 735, 1150
FspBI CTAG 2 cut(s) 404, 966
GluI GCNGC 6 cut(s) 22, 123, 425, 621, 735, 1150
GsaI CCCAGC 3 cut(s) 502, 712, 862
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 5 cut(s) 233, 402, 825, 837, 1397
HapII CCGG 4 cut(s) 98, 477, 890, 1279
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 7 cut(s) 232, 262, 472, 728, 1033, 1045, 1373
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 292, 1350
HpaII CCGG 4 cut(s) 98, 477, 890, 1279
HphI GGTGA 6 cut(s) 16, 52, 466, 553, 934, 1429
Hpy166II GTNNAC 2 cut(s) 43, 256
Hpy188I TCNGA 8 cut(s) 132, 382, 553, 642, 928, 1062, 1177, 1306
Hpy188III TCNNGA 7 cut(s) 60, 91, 193, 289, 770, 805, 1168
Hpy8I GTNNAC 2 cut(s) 43, 256
Hpy99I CGWCG 4 cut(s) 19, 109, 199, 257
HpyAV CCTTC 4 cut(s) 697, 1061, 1318, 1468
HpyCH4III ACNGT 3 cut(s) 370, 1162, 1384
HpyCH4IV ACGT 4 cut(s) 50, 104, 197, 252
HpyCH4V TGCA 5 cut(s) 56, 490, 620, 1041, 1232
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 404, 895
HpyF3I CTNAG 6 cut(s) 84, 799, 981, 1061, 1290, 1428
HpySE526I ACGT 4 cut(s) 50, 104, 197, 252
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 7 cut(s) 232, 262, 472, 728, 1033, 1045, 1373
Kzo9I GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
LmnI GCTCC 5 cut(s) 205, 334, 672, 760, 873
Lsp1109I GCAGC 6 cut(s) 33, 134, 436, 632, 721, 1161
LweI GCATC 5 cut(s) 65, 84, 191, 721, 1209
MaeI CTAG 2 cut(s) 404, 966
MaeII ACGT 4 cut(s) 50, 104, 197, 252
MaeIII GTNAC 6 cut(s) 71, 190, 274, 472, 1016, 1372
MalI GATC 9 cut(s) 8, 219, 481, 531, 634, 678, 774, 925, 1448
MbiI CCGCTC 1 cut(s) 741
MboI GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
MboII GAAGA 4 cut(s) 369, 668, 1444, 1454
MflI RGATCY 2 cut(s) 479, 923
MhlI GDGCHC 1 cut(s) 1122
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 4 cut(s) 650, 913, 975, 1095
MluNI TGGCCA 1 cut(s) 825
MmeI TCCRAC 2 cut(s) 337, 1451
Mox20I TGGCCA 1 cut(s) 825
MscI TGGCCA 1 cut(s) 825
MseI TTAA 3 cut(s) 324, 411, 948
MslI CAYNNNNRTG 4 cut(s) 725, 729, 831, 1115
Msp20I TGGCCA 1 cut(s) 825
MspI CCGG 4 cut(s) 98, 477, 890, 1279
MspR9I CCNGG 2 cut(s) 169, 1280
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 34, 404, 895
NciI CCSGG 1 cut(s) 1280
NdeII GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
NlaIII CATG 7 cut(s) 232, 262, 472, 728, 1033, 1045, 1373
NlaIV GGNNCC 4 cut(s) 164, 207, 481, 573
NmuCI GTSAC 3 cut(s) 190, 472, 1372
PaqCI CACCTGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PfeI GAWTC 2 cut(s) 292, 1350
PkrI GCNGC 6 cut(s) 23, 124, 426, 622, 736, 1151
Psp6I CCWGG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 472
PspFI CCCAGC 3 cut(s) 498, 708, 858
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 4 cut(s) 164, 207, 481, 573
PspPI GGNCC 2 cut(s) 571, 1396
PstNI CAGNNNCTG 1 cut(s) 1382
PsuI RGATCY 2 cut(s) 479, 923
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 4 cut(s) 725, 729, 831, 1115
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 324, 411, 948
SatI GCNGC 6 cut(s) 22, 123, 425, 621, 735, 1150
Sau3AI GATC 9 cut(s) 6, 217, 479, 529, 632, 676, 772, 923, 1446
Sau96I GGNCC 2 cut(s) 571, 1396
ScrFI CCNGG 2 cut(s) 169, 1280
SduI GDGCHC 1 cut(s) 1122
SfaNI GCATC 5 cut(s) 65, 84, 191, 721, 1209
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 4 cut(s) 725, 729, 831, 1115
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 4 cut(s) 650, 913, 975, 1095
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 4 cut(s) 741, 1087, 1365, 1415
SspMI CTAG 2 cut(s) 404, 966
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 167, 1278
StyI CCWWGG 3 cut(s) 114, 334, 919
TaaI ACNGT 3 cut(s) 370, 1162, 1384
TaiI ACGT 4 cut(s) 53, 107, 200, 255
TaqI TCGA 7 cut(s) 59, 90, 107, 255, 1000, 1167, 1449
TasI AATT 4 cut(s) 650, 913, 975, 1095
TfiI GAWTC 2 cut(s) 292, 1350
Tru1I TTAA 3 cut(s) 324, 411, 948
Tru9I TTAA 3 cut(s) 324, 411, 948
TscAI CASTG 2 cut(s) 286, 1411
TseFI GTSAC 3 cut(s) 190, 472, 1372
TseI GCWGC 6 cut(s) 21, 122, 424, 620, 734, 1149
Tsp45I GTSAC 3 cut(s) 190, 472, 1372
TspDTI ATGAA 2 cut(s) 713, 1404
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 2 cut(s) 286, 1411
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 404, 966
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.