Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006000

Physical Location & Seq

Genomic Coordinates Forward (+)

55069071 .. 55072320

Gene Structure 3250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0407700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGAGATCTTCACCGAAAAAGATTGCCATGAGCCTTCAGGCCAGAGAGAGCGCCAGTCCCAGACGGGTAGCGGCAAACCCAGAAGAATGCTCCATTGAGGACGGTTCGTGGAAGGAGGTGGACGTTTGCAGTCCCTTAAAATCTGATAGTAAACTGAAGCACAGGCCCTTGAACGCTTTTAGAGTTGTAAGGGGTGTTCTATGTTTGGTGGTGTTTCTTTCCACTGCTTTCACCATTCTAGTCTGTTTTGCGCCGGTGGTAGCTGTTTTGTTGCGACTTTTTAGCATACATTACAGCAGAAAAGCAACTTCCTTTCTATTTGCTAGGTGGCTGGCTCTCTGGCCCTTTCTATTTGAAAAGATCAACGGGACGAACGTGGTTTTTTCGGGCGATACTGTCCCACCTAGAGAGCGCATTTTGATTATTGCGAATCATAAAACTGAGGTGGATTGGATGTACTTGTGGGATCTTGCATTGCGAAAAGGGTCCCTCGGATATGTTAAATATGTGCTCAAGAGCAGCTTGATGAAGCTGCCTGTTTTCGGTTGGGGGTTCCACGTTCTGGAGTTCATTCCTTTGAAGAGGAAGTGGGAAGTTGATGAACCAATTCTCCGGAAAATGCTATTAAGTTTTGCTGATCCTCGAGACCCTCTCTGGCTTTCTATTTTTCCTGAAGGAACTGATTACGATGAAGAAAAATGCAAAAAGAGCCAGACATTTGCTGCTGAAAATGGACTTCCTGTGCTGTCACATGTGCTACTTCCAAGGACTAAAGGTTTTTGTGCTTGCTTAGAAGCCCTAAGAGGTTCTTTGGATGCAGTTTATGACTTGACAATTGCATACAAGAATCAATGCCCTTCGTTTATGGACAATGCATTTGGTGTAGATCCTTCAGAAGTACACATTCATGTTCGGCGTATCTCAATGGAAGATATCCCGGAGTCTAGCACAGATGCTGCATCTTGGTTAGTGGACACATTCCATCTCAAGGACAACATGCTGTCAGATTTCCATACTCGAGGCCATTTTCCTAATGAAGGAGGAGAAGAAGACATTTCTGCGTTCAAGGGTTTGGTAAATTTTATGTTGATACTTATTTTGACAGTGGTTATCATTTACCTTACCATTTTTTCATCGGTCTGGTTTAAAATATACATCGGTTTATCATGTGCATACCTTGCTTCCGCAACATATTTTGAAATCCAACCGGTGCCAGTATTAGACTTTGTTAAAGCAACATTGGTTTGCAATAGACTCAGATGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

422

Amino Acids

47.94

Weight (kDa)

7.95

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	127 - 251	3e-16	Acyltransferase
Acyltransf_C	PF16076	294 - 362	3e-17	Acyltransferase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17760 AT3G17760
fragaria_vesca	FvH4_4g35930 FvH4_5g18010
malus_domestica	MD06G1235500.v1.1 MD16G1010800.v1.1
prunus_persica	Prupe.1G339900_v2.0.a1 Prupe.5G240300_v2.0.a1
pyrus_communis	pycom06g21060 pycom16g01050
rosa_chinensis	RchiOBHm_Chr4g0406101 RchiOBHm_Chr4g0445561 RchiOBHm_Chr7g0177601
rosa_laevigata	RLG00000005522 RLG00000005730
rosa_multiflora	Rmu_ssc0000253.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386030
rosa_rugosa	Rorug04G0362500 Rorug06G0407700
rosa_samantha	Rh4AG423900 Rh4BG435900 Rh4CG450600 Rh4DG432300 Rh7AG007000 Rh7DG007100
rosa_wichuraiana	Rw4G036330 Rw7G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1210
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccIII	TCCGGA	1 cut(s)	612
AciI	CCGC	2 cut(s)	71, 1185
AclWI	GGATC	3 cut(s)	474, 632, 881
AcsI	RAATTY	1 cut(s)	1078
AcuI	CTGAAG	4 cut(s)	20, 176, 693, 876
AfaI	GTAC	2 cut(s)	458, 900
AfiI	CCNNNNNNNGG	4 cut(s)	542, 562, 988, 1037
AflIII	ACRYGT	1 cut(s)	751
AgeI	ACCGGT	1 cut(s)	1207
AgsI	TTSAA	5 cut(s)	172, 356, 580, 1066, 1199
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	3 cut(s)	263, 522, 532
AluI	AGCT	3 cut(s)	263, 522, 532
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	639
AlwI	GGATC	3 cut(s)	474, 632, 881
AlwNI	CAGNNNCTG	1 cut(s)	956
Ama87I	CYCGRG	2 cut(s)	642, 1017
Aor13HI	TCCGGA	1 cut(s)	612
AoxI	GGCC	4 cut(s)	39, 164, 341, 1021
ApeKI	GCWGC	4 cut(s)	519, 532, 722, 956
ApoI	RAATTY	1 cut(s)	1078
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
AsiGI	ACCGGT	1 cut(s)	1207
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	3 cut(s)	53, 253, 414
AspS9I	GGNCC	3 cut(s)	165, 342, 486
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	2 cut(s)	3, 223
AvaI	CYCGRG	2 cut(s)	642, 1017
AvaII	GGWCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	1210
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	519, 531, 709, 943
BccI	CCATC	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	1 cut(s)	639
BfaI	CTAG	4 cut(s)	239, 324, 405, 945
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	5 cut(s)	72, 520, 533, 723, 957
BlsI	GCNGC	5 cut(s)	73, 521, 534, 724, 958
Bme1390I	CCNGG	1 cut(s)	938
Bme18I	GGWCC	1 cut(s)	486
BmeT110I	CYCGRG	2 cut(s)	642, 1017
BmgT120I	GGNCC	3 cut(s)	165, 342, 486
BmiI	GGNNCC	4 cut(s)	487, 488, 554, 1212
BmrFI	CCNGG	1 cut(s)	938
BmsI	GCATC	3 cut(s)	805, 943, 968
BpiI	GAAGAC	1 cut(s)	1056
BplI	GAGNNNNNCTC	2 cut(s)	636, 668
BpmI	CTGGAG	1 cut(s)	584
BpuEI	CTTGAG	2 cut(s)	497, 971
BpuMI	CCSGG	1 cut(s)	938
BsaI	GGTCTC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	490, 764
BsaWI	WCCGGW	2 cut(s)	612, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	542, 562, 988, 1037
Bse118I	RCCGGY	2 cut(s)	253, 1207
Bse1I	ACTGG	2 cut(s)	54, 1214
Bse3DI	GCAATG	1 cut(s)	473
BseAI	TCCGGA	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	490, 764
BseGI	GGATG	2 cut(s)	459, 820
BseLI	CCNNNNNNNGG	4 cut(s)	542, 562, 988, 1037
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	54, 1214
BseRI	GAGGAG	1 cut(s)	1056
BseXI	GCAGC	4 cut(s)	519, 531, 709, 943
BshFI	GGCC	4 cut(s)	41, 166, 343, 1023
BshNI	GGYRCC	1 cut(s)	1210
BshTI	ACCGGT	1 cut(s)	1207
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	2 cut(s)	642, 1017
BsiSI	CCGG	4 cut(s)	254, 613, 938, 1208
BslFI	GGGAC	5 cut(s)	42, 117, 382, 383, 472
BslI	CCNNNNNNNGG	4 cut(s)	542, 562, 988, 1037
BsmAI	GTCTC	1 cut(s)	639
BsmFI	GGGAC	5 cut(s)	42, 117, 382, 383, 472
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	41, 166, 343, 1023
Bso31I	GGTCTC	1 cut(s)	639
BsoBI	CYCGRG	2 cut(s)	642, 1017
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp13I	TCCGGA	1 cut(s)	612
Bsp143I	GATC	5 cut(s)	5, 360, 466, 637, 886
BspACI	CCGC	2 cut(s)	71, 1185
BspANI	GGCC	4 cut(s)	41, 166, 343, 1023
BspCNI	CTCAG	2 cut(s)	433, 1269
BspEI	TCCGGA	1 cut(s)	612
BspLI	GGNNCC	4 cut(s)	487, 488, 554, 1212
BspPI	GGATC	3 cut(s)	474, 632, 881
BspT107I	GGYRCC	1 cut(s)	1210
BspTNI	GGTCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	473
BsrFI	RCCGGY	2 cut(s)	253, 1207
BsrI	ACTGG	2 cut(s)	54, 1214
BssAI	RCCGGY	2 cut(s)	253, 1207
BssECI	CCNNGG	2 cut(s)	490, 764
BssMI	GATC	5 cut(s)	5, 360, 466, 637, 886
BssT1I	CCWWGG	1 cut(s)	764
Bst4CI	ACNGT	3 cut(s)	104, 397, 1105
Bst6I	CTCTTC	1 cut(s)	575
BstAPI	GCANNNNNTGC	1 cut(s)	1178
BstC8I	GCNNGC	2 cut(s)	333, 787
BstDEI	CTNAG	4 cut(s)	441, 790, 800, 1256
BstENI	CCTNNNNNAGG	1 cut(s)	1035
BstF5I	GGATG	2 cut(s)	459, 820
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	3 cut(s)	53, 253, 414
BstKTI	GATC	5 cut(s)	8, 363, 469, 640, 889
BstMAI	GTCTC	1 cut(s)	639
BstMBI	GATC	5 cut(s)	5, 360, 466, 637, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	708, 1178
BstNSI	RCATGY	2 cut(s)	755, 1000
BstSCI	CCNGG	1 cut(s)	936
BstV1I	GCAGC	4 cut(s)	519, 531, 709, 943
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	3 cut(s)	5, 466, 886
BstYI	RGATCY	3 cut(s)	5, 466, 886
BsuRI	GGCC	4 cut(s)	41, 166, 343, 1023
BtsCI	GGATG	2 cut(s)	459, 820
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 1110
Cac8I	GCNNGC	2 cut(s)	333, 787
CaiI	CAGNNNCTG	1 cut(s)	956
CfoI	GCGC	3 cut(s)	53, 253, 414
Cfr10I	RCCGGY	2 cut(s)	253, 1207
Cfr13I	GGNCC	3 cut(s)	165, 342, 486
Csp6I	GTAC	2 cut(s)	457, 899
CspAI	ACCGGT	1 cut(s)	1207
CviAII	CATG	5 cut(s)	28, 752, 908, 997, 1167
CviQI	GTAC	2 cut(s)	457, 899
DdeI	CTNAG	4 cut(s)	441, 790, 800, 1256
DpnI	GATC	5 cut(s)	7, 362, 468, 639, 888
DpnII	GATC	5 cut(s)	5, 360, 466, 637, 886
DraI	TTTAAA	1 cut(s)	1147
Eam1104I	CTCTTC	1 cut(s)	575
EarI	CTCTTC	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	764
Eco31I	GGTCTC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	934
Eco47I	GGWCC	1 cut(s)	486
Eco57I	CTGAAG	4 cut(s)	20, 176, 693, 876
Eco88I	CYCGRG	2 cut(s)	642, 1017
EcoNI	CCTNNNNNAGG	1 cut(s)	1035
EcoO109I	RGGNCCY	2 cut(s)	165, 486
EcoRV	GATATC	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	764
EcoT22I	ATGCAT	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	5 cut(s)	31, 755, 911, 1000, 1170
FalI	AAGNNNNNCTT	4 cut(s)	506, 538, 793, 825
FaqI	GGGAC	5 cut(s)	42, 117, 382, 383, 472
FatI	CATG	5 cut(s)	27, 751, 907, 996, 1166
Fnu4HI	GCNGC	5 cut(s)	72, 520, 533, 723, 957
FokI	GGATG	2 cut(s)	466, 827
Fsp4HI	GCNGC	5 cut(s)	72, 520, 533, 723, 957
FspBI	CTAG	4 cut(s)	239, 324, 405, 945
GlaI	GCGC	3 cut(s)	52, 252, 413
GluI	GCNGC	5 cut(s)	72, 520, 533, 723, 957
GsuI	CTGGAG	1 cut(s)	584
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	41, 166, 343, 1023
HapII	CCGG	4 cut(s)	254, 613, 938, 1208
HhaI	GCGC	3 cut(s)	53, 253, 414
Hin1II	CATG	5 cut(s)	31, 755, 911, 1000, 1170
Hin6I	GCGC	3 cut(s)	51, 251, 412
HinP1I	GCGC	3 cut(s)	51, 251, 412
HinfI	GANTC	4 cut(s)	430, 847, 941, 1254
HpaII	CCGG	4 cut(s)	254, 613, 938, 1208
HphI	GGTGA	2 cut(s)	3, 223
Hpy166II	GTNNAC	4 cut(s)	121, 152, 901, 973
Hpy188I	TCNGA	5 cut(s)	145, 494, 895, 1006, 1259
Hpy188III	TCNNGA	5 cut(s)	514, 563, 613, 644, 671
Hpy8I	GTNNAC	4 cut(s)	121, 152, 901, 973
HpyAV	CCTTC	6 cut(s)	44, 106, 668, 867, 900, 1031
HpyCH4III	ACNGT	3 cut(s)	104, 397, 1105
HpyCH4IV	ACGT	3 cut(s)	123, 375, 558
HpyCH4V	TGCA	9 cut(s)	129, 473, 702, 818, 839, 875, 959, 1172, 1248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	708, 1178
HpyF3I	CTNAG	4 cut(s)	441, 790, 800, 1256
HpySE526I	ACGT	3 cut(s)	123, 375, 558
Hsp92II	CATG	5 cut(s)	31, 755, 911, 1000, 1170
HspAI	GCGC	3 cut(s)	51, 251, 412
KflI	GGGWCCC	1 cut(s)	486
Kpn2I	TCCGGA	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	5, 360, 466, 637, 886
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	4 cut(s)	519, 531, 709, 943
LweI	GCATC	3 cut(s)	805, 943, 968
MaeI	CTAG	4 cut(s)	239, 324, 405, 945
MaeII	ACGT	3 cut(s)	123, 375, 558
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	5 cut(s)	7, 362, 468, 639, 888
MboI	GATC	5 cut(s)	5, 360, 466, 637, 886
MboII	GAAGA	6 cut(s)	95, 592, 704, 941, 1058, 1061
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	3 cut(s)	5, 466, 886
MhlI	GDGCHC	1 cut(s)	513
MluCI	AATT	3 cut(s)	606, 834, 1078
MlyI	GAGTC	2 cut(s)	950, 1248
MmeI	TCCRAC	1 cut(s)	1228
Mph1103I	ATGCAT	1 cut(s)	877
MroI	TCCGGA	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	5 cut(s)	137, 501, 626, 1146, 1230
MslI	CAYNNNNRTG	1 cut(s)	906
MspI	CCGG	4 cut(s)	254, 613, 938, 1208
MspR9I	CCNGG	1 cut(s)	938
MunI	CAATTG	1 cut(s)	834
Mva1269I	GAATGC	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	708, 1178
NciI	CCSGG	1 cut(s)	938
NdeII	GATC	5 cut(s)	5, 360, 466, 637, 886
NlaIII	CATG	5 cut(s)	31, 755, 911, 1000, 1170
NlaIV	GGNNCC	4 cut(s)	487, 488, 554, 1212
NmuCI	GTSAC	1 cut(s)	747
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	2 cut(s)	755, 1000
PaeR7I	CTCGAG	2 cut(s)	642, 1017
PciI	ACATGT	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	2 cut(s)	430, 847
PflMI	CCANNNNNTGG	1 cut(s)	562
PfoI	TCCNGGA	1 cut(s)	936
PinAI	ACCGGT	1 cut(s)	1207
PkrI	GCNGC	5 cut(s)	73, 521, 534, 724, 958
PleI	GAGTC	2 cut(s)	949, 1248
PpsI	GAGTC	2 cut(s)	949, 1248
PpuMI	RGGWCCY	1 cut(s)	486
PscI	ACATGT	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	486
PspN4I	GGNNCC	4 cut(s)	487, 488, 554, 1212
PspPI	GGNCC	3 cut(s)	165, 342, 486
PspPPI	RGGWCCY	1 cut(s)	486
PspXI	VCTCGAGB	1 cut(s)	1017
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	3 cut(s)	5, 466, 886
RsaI	GTAC	2 cut(s)	458, 900
RsaNI	GTAC	2 cut(s)	457, 899
RseI	CAYNNNNRTG	1 cut(s)	906
SaqAI	TTAA	5 cut(s)	137, 501, 626, 1146, 1230
SatI	GCNGC	5 cut(s)	72, 520, 533, 723, 957
Sau3AI	GATC	5 cut(s)	5, 360, 466, 637, 886
Sau96I	GGNCC	3 cut(s)	165, 342, 486
SchI	GAGTC	2 cut(s)	950, 1248
ScrFI	CCNGG	1 cut(s)	938
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	805, 943, 968
Sfr274I	CTCGAG	2 cut(s)	642, 1017
SgrAI	CRCCGGYG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	486
SlaI	CTCGAG	2 cut(s)	642, 1017
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	4 cut(s)	512, 642, 986, 1017
SmoI	CTYRAG	4 cut(s)	512, 642, 986, 1017
Sse9I	AATT	3 cut(s)	606, 834, 1078
SsiI	CCGC	2 cut(s)	71, 1185
SspMI	CTAG	4 cut(s)	239, 324, 405, 945
StyD4I	CCNGG	1 cut(s)	936
StyI	CCWWGG	1 cut(s)	764
TaaI	ACNGT	3 cut(s)	104, 397, 1105
TaiI	ACGT	3 cut(s)	126, 378, 561
TaqI	TCGA	2 cut(s)	643, 1018
TaqII	GACCGA	1 cut(s)	1126
TasI	AATT	3 cut(s)	606, 834, 1078
TatI	WGTACW	2 cut(s)	456, 898
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	430, 847
Tru1I	TTAA	5 cut(s)	137, 501, 626, 1146, 1230
Tru9I	TTAA	5 cut(s)	137, 501, 626, 1146, 1230
TscAI	CASTG	2 cut(s)	229, 1110
TseFI	GTSAC	1 cut(s)	747
TseI	GCWGC	4 cut(s)	519, 532, 722, 956
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	7 cut(s)	542, 559, 615, 705, 896, 1050, 1122
TspRI	CASTG	2 cut(s)	229, 1110
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	486
XagI	CCTNNNNNAGG	1 cut(s)	1035
XapI	RAATTY	1 cut(s)	1078
XceI	RCATGY	2 cut(s)	755, 1000
XhoI	CTCGAG	2 cut(s)	642, 1017
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	4 cut(s)	239, 324, 405, 945
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.