RLG00000005522

Belongs to the group II decarboxylase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
68281506 .. 68284550
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005522

Sequence Viewer

Length: 1515 bp
ATGGTGATCTCGACGACCGCCGTTGATCGTGCAGATCACTTTCTGGACTGTACCTTTGCTTCCAGATATGTGCGCGCTGCTGTCCCCAAGTTCATGATGCCGGCGACCTCACAACCCAAAGAAGCAGCTTATCAGATAATAAGCGATGAGCTTATGCTGGATGGGGCTCCAAGACTCAACTTGGCCTCATTCGTGACCACCTGGATGGAGCCGGAATGCGATAAACTCATGATGGCCTCTATGAACAAAAATTATGTTGACATGGATGAGTACCCTGTCACCACTGAACTTCAGAATCGCTGTGTGAATATGATCGCCAACCTTTTCAATGCTCCCATCGGAGCAGCTGAAACTGCTGTTGGCGTGGGGACGGTAGGATCTTCAGAGGCAATTATGCTGGCTGGCCTAGCTTTTAAAAGAAAATGGCAGCACAGGAGGAAATTAGAAGGCAAACCCTACGACAAGCCCAACATTGTCACTGGAGCTAATGTGCAGGTTTGCTGGGAAAAGTTTGCTAGGTATTTTGAGGTTGAACTGAAGGAGGTAAAGCTATCAGAGGGATACTATGTGATGGACCCTGTCAAAGCAGTTGAGATGGTTGATGAGAACACTATCTGTGTTGCAGCTATTCTAGGTTCAACCCTGACGGGAGAATTTGAGGATGTGAAGCTCCTTAATGATCTTCTTATTAAGAAGAATAAGGAGACAGGATGGGAAACTCCCATTCATGTTGATGCCGCCAGTGGAGGCTTTATAGCGCCGTTCCTTTATCCTGAACTTGAGTGGGACTTCCGTTTGCCATTAGTCAAGAGTATCAATGTAAGTGGCCACAAGTATGGCCTTGTATATGCTGGTGTTGGATGGGTTGTGTGGAGGAGTAAAGAGGACTTGCCCGACGAGCTTGTGTTTCACATCAATTATCTTGGATCTGATCAGCCAACTTTCACCCTCAACTTTTCCAAAGGGTCTAGCCAAATAATTGCTCAGTATTATCAGTTTATACGACTGGGATTTGAGGGTTACAAAAATGTAATGGAAAACTGCATGGACAATACAAGAGCACTGAAAGAAGGACTAGAGAAAACAGGGCGGTTTGAAATTCTGTCCAAAGACATGGGAGTGCCCCTGGTGGCTTTCAAACTAAAAGACAGCAGCAAGCACACTGTGTTTGAGATAGCTGATAGTTTGAGGAAGTTTGGATGGATAGTTCCAGCCTACACTATGCCAGCCAATGCAGAACATATTGCTGTTCTTCGTGTGGTTGTTAGGGAGGATTTTAGCCGGGGCTTGGCGGAGAGACTCCTCTCAGACATCGACAAGGTTTTGAACGAAATCGACACACTGCCAAGCCGCGTGTCTATGAAAGCTGCACATGTCACAGCTACTGTCGATAAAGTAGTCAATGCCAGTGAAGGGATGGTAAAGCCTGGTAAGAAAAGTGTAGAGGAGATTCAAAGAGAGGTAGCAACATATTGGAGGAACCTTGTGGAAAGAAAGAGAACAGGCGTATGCTAG

Protein Analysis

505

Amino Acids

56.64

Weight (kDa)

5.9

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 37 - 382 5.2e-103 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccII CGCG 2 cut(s) 75, 1353
AciI CCGC 5 cut(s) 18, 738, 1090, 1292, 1351
AclWI GGATC 2 cut(s) 385, 934
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 2 cut(s) 653, 1098
AcuI CTGAAG 3 cut(s) 275, 366, 557
AdeI CACNNNGTG 1 cut(s) 1165
AfaI GTAC 2 cut(s) 52, 272
AfiI CCNNNNNNNGG 2 cut(s) 1288, 1413
AflIII ACRYGT 1 cut(s) 1372
AgsI TTSAA 7 cut(s) 328, 533, 639, 1097, 1138, 1327, 1454
AjnI CCWGG 3 cut(s) 200, 1125, 1426
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AloI GAACNNNNNNTCC 2 cut(s) 1191, 1223
Alw21I GWGCWC 1 cut(s) 1063
Alw26I GTCTC 2 cut(s) 698, 1291
AlwI GGATC 2 cut(s) 385, 934
AlwNI CAGNNNCTG 1 cut(s) 1385
AoxI GGCC 5 cut(s) 183, 234, 403, 826, 838
ApeKI GCWGC 7 cut(s) 77, 125, 344, 427, 623, 1152, 1367
ApoI RAATTY 2 cut(s) 653, 1098
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 3 cut(s) 75, 77, 760
AspS9I GGNCC 1 cut(s) 574
AsuC2I CCSGG 1 cut(s) 1283
AsuHPI GGTGA 3 cut(s) 16, 271, 937
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 1125
BalI TGGCCA 1 cut(s) 828
BanII GRGCYC 1 cut(s) 169
BarI GAAGNNNNNNTAC 2 cut(s) 43, 75
Bbv12I GWGCWC 1 cut(s) 1063
BbvI GCAGC 7 cut(s) 64, 137, 356, 439, 635, 1164, 1354
BceAI ACGGC 2 cut(s) 5, 745
BciT130I CCWGG 3 cut(s) 202, 1127, 1428
BciVI GTATCC 1 cut(s) 554
BclI TGATCA 1 cut(s) 931
BcnI CCSGG 1 cut(s) 1283
BcoDI GTCTC 2 cut(s) 698, 1291
BfaI CTAG 6 cut(s) 407, 516, 632, 969, 1076, 1513
BfoI RGCGCY 1 cut(s) 761
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 9 cut(s) 78, 126, 345, 428, 624, 738, 1153, 1351, 1368
BlsI GCNGC 9 cut(s) 79, 127, 346, 429, 625, 739, 1154, 1352, 1369
Bme1390I CCNGG 4 cut(s) 202, 1127, 1283, 1428
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 4 cut(s) 168, 210, 576, 1481
BmrFI CCNGG 4 cut(s) 202, 1127, 1283, 1428
BmrI ACTGGG 1 cut(s) 1016
BmsI GCATC 2 cut(s) 87, 724
BmuI ACTGGG 1 cut(s) 1016
BpmI CTGGAG 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 1283
BsaJI CCNNGG 2 cut(s) 1125, 1282
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 1288, 1413
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 4 cut(s) 484, 741, 1011, 1407
BseBI CCWGG 3 cut(s) 202, 1127, 1428
BseDI CCNNGG 2 cut(s) 1125, 1282
BseGI GGATG 8 cut(s) 166, 210, 271, 667, 716, 866, 1205, 1422
BseLI CCNNNNNNNGG 2 cut(s) 1288, 1413
BseMII CTCAG 2 cut(s) 998, 1320
BseNI ACTGG 4 cut(s) 484, 741, 1011, 1407
BsePI GCGCGC 1 cut(s) 73
BseRI GAGGAG 3 cut(s) 889, 1292, 1460
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 7 cut(s) 64, 137, 356, 439, 635, 1164, 1354
BseYI CCCAGC 1 cut(s) 501
BsgI GTGCAG 3 cut(s) 51, 512, 1353
Bsh1236I CGCG 2 cut(s) 75, 1353
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 5 cut(s) 185, 236, 405, 828, 840
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 1063
BsiSI CCGG 3 cut(s) 101, 212, 1282
BslFI GGGAC 3 cut(s) 68, 382, 800
BslI CCNNNNNNNGG 2 cut(s) 1288, 1413
BsmAI GTCTC 2 cut(s) 698, 1291
BsmFI GGGAC 3 cut(s) 68, 382, 800
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 5 cut(s) 185, 236, 405, 828, 840
Bsp1286I GDGCHC 3 cut(s) 169, 1063, 1125
Bsp143I GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
BspACI CCGC 5 cut(s) 18, 738, 1090, 1292, 1351
BspANI GGCC 5 cut(s) 185, 236, 405, 828, 840
BspCNI CTCAG 2 cut(s) 997, 1319
BspFNI CGCG 2 cut(s) 75, 1353
BspHI TCATGA 2 cut(s) 93, 228
BspLI GGNNCC 4 cut(s) 168, 210, 576, 1481
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 2 cut(s) 385, 934
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 4 cut(s) 484, 741, 1011, 1407
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 1125, 1282
BssHII GCGCGC 1 cut(s) 73
BssMI GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
Bst2UI CCWGG 3 cut(s) 202, 1127, 1428
Bst4CI ACNGT 4 cut(s) 50, 373, 1165, 1387
BstC8I GCNNGC 6 cut(s) 75, 102, 399, 403, 1157, 1227
BstDEI CTNAG 2 cut(s) 984, 1306
BstF5I GGATG 8 cut(s) 166, 210, 271, 667, 716, 866, 1205, 1422
BstFNI CGCG 2 cut(s) 75, 1353
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 3 cut(s) 75, 77, 760
BstKTI GATC 8 cut(s) 9, 28, 37, 315, 380, 682, 929, 934
BstMAI GTCTC 2 cut(s) 698, 1291
BstMBI GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 353, 407, 898
BstNI CCWGG 3 cut(s) 202, 1127, 1428
BstNSI RCATGY 1 cut(s) 1376
BstSCI CCNGG 4 cut(s) 200, 1125, 1281, 1426
BstSLI GKGCMC 1 cut(s) 1125
BstUI CGCG 2 cut(s) 75, 1353
BstV1I GCAGC 7 cut(s) 64, 137, 356, 439, 635, 1164, 1354
BstX2I RGATCY 2 cut(s) 377, 926
BstXI CCANNNNNNTGG 3 cut(s) 205, 836, 1114
BstYI RGATCY 2 cut(s) 377, 926
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 5 cut(s) 185, 236, 405, 828, 840
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 8 cut(s) 166, 210, 271, 667, 716, 866, 1205, 1422
BtsI GCAGTG 1 cut(s) 1340
BtsIMutI CAGTG 7 cut(s) 282, 477, 748, 1061, 1161, 1340, 1414
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 6 cut(s) 75, 102, 399, 403, 1157, 1227
CaiI CAGNNNCTG 1 cut(s) 1385
CciI TCATGA 2 cut(s) 93, 228
CfoI GCGC 3 cut(s) 75, 77, 760
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 2 cut(s) 51, 271
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 7 cut(s) 94, 229, 262, 728, 1045, 1114, 1373
CviQI GTAC 2 cut(s) 51, 271
DdeI CTNAG 2 cut(s) 984, 1306
DpnI GATC 8 cut(s) 8, 27, 36, 314, 379, 681, 928, 933
DpnII GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
DraI TTTAAA 1 cut(s) 415
DraIII CACNNNGTG 1 cut(s) 1165
EaeI YGGCCR 1 cut(s) 826
EciI GGCGGA 1 cut(s) 1307
Eco24I GRGCYC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 3 cut(s) 275, 366, 557
EcoRII CCWGG 3 cut(s) 200, 1125, 1426
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 7 cut(s) 97, 232, 265, 731, 1048, 1117, 1376
FaqI GGGAC 3 cut(s) 68, 382, 800
FatI CATG 7 cut(s) 93, 228, 261, 727, 1044, 1113, 1372
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 9 cut(s) 78, 126, 345, 428, 624, 738, 1153, 1351, 1368
FokI GGATG 8 cut(s) 173, 217, 278, 674, 723, 873, 1212, 1429
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 9 cut(s) 78, 126, 345, 428, 624, 738, 1153, 1351, 1368
FspBI CTAG 6 cut(s) 407, 516, 632, 969, 1076, 1513
GlaI GCGC 3 cut(s) 74, 76, 759
GluI GCNGC 9 cut(s) 78, 126, 345, 428, 624, 738, 1153, 1351, 1368
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 761
HaeIII GGCC 5 cut(s) 185, 236, 405, 828, 840
HapII CCGG 3 cut(s) 101, 212, 1282
HhaI GCGC 3 cut(s) 75, 77, 760
Hin1II CATG 7 cut(s) 97, 232, 265, 731, 1048, 1117, 1376
Hin6I GCGC 3 cut(s) 73, 75, 758
HinP1I GCGC 3 cut(s) 73, 75, 758
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 4 cut(s) 174, 295, 1299, 1450
HpaII CCGG 3 cut(s) 101, 212, 1282
HphI GGTGA 3 cut(s) 16, 271, 937
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 7 cut(s) 135, 294, 341, 385, 556, 931, 1309
Hpy188III TCNNGA 8 cut(s) 10, 44, 63, 94, 193, 229, 773, 808
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 16, 899
HpyAV CCTTC 4 cut(s) 440, 532, 1064, 1406
HpyCH4III ACNGT 4 cut(s) 50, 373, 1165, 1387
HpyCH4V TGCA 6 cut(s) 32, 493, 623, 1044, 1235, 1370
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 407, 898
HpyF3I CTNAG 2 cut(s) 984, 1306
Hsp92II CATG 7 cut(s) 97, 232, 265, 731, 1048, 1117, 1376
HspAI GCGC 3 cut(s) 73, 75, 758
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
LmnI GCTCC 6 cut(s) 172, 208, 337, 341, 482, 675
Lsp1109I GCAGC 7 cut(s) 64, 137, 356, 439, 635, 1164, 1354
LweI GCATC 2 cut(s) 87, 724
MaeI CTAG 6 cut(s) 407, 516, 632, 969, 1076, 1513
MaeIII GTNAC 5 cut(s) 193, 277, 475, 1019, 1375
MalI GATC 8 cut(s) 8, 27, 36, 314, 379, 681, 928, 933
MboI GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
MboII GAAGA 4 cut(s) 372, 674, 706, 1244
MflI RGATCY 2 cut(s) 377, 926
MhlI GDGCHC 3 cut(s) 169, 1063, 1125
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 7 cut(s) 250, 390, 440, 653, 916, 978, 1098
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 168, 1293
MmeI TCCRAC 1 cut(s) 838
Mox20I TGGCCA 1 cut(s) 828
MroNI GCCGGC 1 cut(s) 100
MscI TGGCCA 1 cut(s) 828
MseI TTAA 3 cut(s) 414, 675, 690
MslI CAYNNNNRTG 4 cut(s) 203, 732, 834, 1118
Msp20I TGGCCA 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 3 cut(s) 101, 212, 1282
MspR9I CCNGG 4 cut(s) 202, 1127, 1283, 1428
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 3 cut(s) 202, 1127, 1428
MvnI CGCG 2 cut(s) 75, 1353
MwoI GCNNNNNNNGC 3 cut(s) 353, 407, 898
NaeI GCCGGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 1283
NdeII GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 7 cut(s) 97, 232, 265, 731, 1048, 1117, 1376
NlaIV GGNNCC 4 cut(s) 168, 210, 576, 1481
NmuCI GTSAC 4 cut(s) 193, 277, 475, 1375
NspI RCATGY 1 cut(s) 1376
PagI TCATGA 2 cut(s) 93, 228
PauI GCGCGC 1 cut(s) 73
PciI ACATGT 1 cut(s) 1372
PctI GAATGC 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 295, 1450
PflFI GACNNNGTC 1 cut(s) 578
PkrI GCNGC 9 cut(s) 79, 127, 346, 429, 625, 739, 1154, 1352, 1369
PleI GAGTC 2 cut(s) 168, 1293
PpsI GAGTC 2 cut(s) 168, 1293
PscI ACATGT 1 cut(s) 1372
Psp6I CCWGG 3 cut(s) 200, 1125, 1426
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 3 cut(s) 200, 1125, 1426
PspN4I GGNNCC 4 cut(s) 168, 210, 576, 1481
PspPI GGNCC 1 cut(s) 574
PstNI CAGNNNCTG 1 cut(s) 1385
PsuI RGATCY 2 cut(s) 377, 926
PsyI GACNNNGTC 1 cut(s) 578
PteI GCGCGC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 2 cut(s) 52, 272
RsaNI GTAC 2 cut(s) 51, 271
RseI CAYNNNNRTG 4 cut(s) 203, 732, 834, 1118
SaqAI TTAA 3 cut(s) 414, 675, 690
SatI GCNGC 9 cut(s) 78, 126, 345, 428, 624, 738, 1153, 1351, 1368
Sau3AI GATC 8 cut(s) 6, 25, 34, 312, 377, 679, 926, 931
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 2 cut(s) 168, 1293
ScrFI CCNGG 4 cut(s) 202, 1127, 1283, 1428
SduI GDGCHC 3 cut(s) 169, 1063, 1125
SfaNI GCATC 2 cut(s) 87, 724
SinI GGWCC 1 cut(s) 574
SmiMI CAYNNNNRTG 4 cut(s) 203, 732, 834, 1118
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 7 cut(s) 250, 390, 440, 653, 916, 978, 1098
SsiI CCGC 5 cut(s) 18, 738, 1090, 1292, 1351
SspMI CTAG 6 cut(s) 407, 516, 632, 969, 1076, 1513
StyD4I CCNGG 4 cut(s) 200, 1125, 1281, 1426
TaaI ACNGT 4 cut(s) 50, 373, 1165, 1387
TaqI TCGA 4 cut(s) 11, 1314, 1335, 1389
TasI AATT 7 cut(s) 250, 390, 440, 653, 916, 978, 1098
TauI GCSGC 2 cut(s) 740, 1353
TfiI GAWTC 2 cut(s) 295, 1450
Tru1I TTAA 3 cut(s) 414, 675, 690
Tru9I TTAA 3 cut(s) 414, 675, 690
TscAI CASTG 7 cut(s) 289, 484, 748, 1068, 1168, 1347, 1414
TseFI GTSAC 4 cut(s) 193, 277, 475, 1375
TseI GCWGC 7 cut(s) 77, 125, 344, 427, 623, 1152, 1367
Tsp45I GTSAC 4 cut(s) 193, 277, 475, 1375
TspDTI ATGAA 4 cut(s) 82, 257, 716, 1376
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 7 cut(s) 289, 484, 748, 1068, 1168, 1347, 1414
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 2 cut(s) 653, 1098
XceI RCATGY 1 cut(s) 1376
XcmI CCANNNNNNNNNTGG 1 cut(s) 1414
XspI CTAG 6 cut(s) 407, 516, 632, 969, 1076, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.