Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006000

Physical Location & Seq

Genomic Coordinates Forward (+)

494530 .. 497730

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGTGATCTCGACGACCGCCGGTGATCGTGCAGATCACTTTCTGGACTGTACCTTTGCTTCCAGATATGTGCGCAATCCCGTCCCCAAGTTCATGATGCCGGAGACCTCACAACCCAAAGAAGCAGCTTATCAGATAATAAGCGATGAGCTTATGCTGGATGGGGCTCCAAGACTCAACTTGGCCTCATTCGTGACCACCTGGATGGAGCCGGAATGCGATAAACTCATGATGGCCTCTATGAACAAAAACTATGTTGACATGGACGAGTACCCTGTCACCACTGAACTTCAGAATCGCTGTGTGAATATGATCGCCAACCTTTTCAATGCTCCCATCGGAGCAGCTGAAACTGCTGTTGGCGTGGGGACGGTAGGATCTTCAGAGGCAATTATGCTGGCTGGCCTAGCTTTTAAAAGAAAATGGCAGCACAGGAGGAAATTAGAAGGCAAACCCTACGACAAGCCCAACATTGTCACCGGAGCTAATGTGCAGGTTTGCTGGGAAAAGTTTGCTAGGTATTTTGAGGTTGAACTGAAGGAGGTAAAGCTATCAGAGGGATACTATGTGATGGACCCTGTCAAAGCAGTTGAGATGGTTGATGAGAACACTATCTGTGTTGCAGCTATTCTAGGTTCAACCCTGACGGGAGAGTTTGAGGATGTGAAGCTCCTTAATGATCTTCTTATTAAGAAGAATAAGGAGACAGGATGGGAAACTCCCATTCATGTTGATGCTGCCAGTGGAGGCTTTATAGCGCCGTTCCTTTATCCTGAACTTGAGTGGGACTTCCGTTTGCCATTAGTCAAGAGTATCAATGTAAGTGGCCACAAGTATGGCCTTGTATATGCTGGTGTTGGATGGGTTGTGTGGAGGAGTAAAGAGGACTTGCCCGACGAGCTTGTGTTTCACATCAATTATCTTGGATCTGATCAACCAACTTTCACCCTCAACTTTTCCAAAGGGTCTAGCCAAATAATTGCTCAGTATTATCAGTTTATACGACTGGGATTTGAGGGTTACAAAAATGTAATGGAAAACTGCATGGACAATACAAGAGCACTGAAAGAAGGACTAGAGAAAACAGGGCGGTTTGAAATTCTGTCCAAAGACATAGGAGTGCCCCTGGTGGCTTTCAAACTAAAAGACAGCAGCAAGCACACTGTGTTTGAGATAGCTGATAGTTTGAGAAAGTTTGGATGGATAGTTCCAGCCTACACTATGCCAGCCAATGCAGAACATATTGCTGTTCTTCGTGTGGTTGTTAGGGAGGATTTTAGCCGGAGCTTGGCGGAGAGACTCCTCTCAGACATCGACAAGGTTTTGAACGAAATTGACACACTGCCAAGCCGTGTGTCTATGAAAGCTGCAAATGTCACAGCTACTGTCGATGAAGTAGTCAATGCCAGTGAAGGGATGGTAAAGCCTGGTAAGAAAAGTGTAGAGGAAATTCAAAGAGAGGTAGCAACATATTGGAGGAACCTTGTGGAAAGAAAGAGAACAGGTGTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

ko00250 ko00410 ko00430 ko00650 ko01100 ko01110 ko01120 ko02024 ko04727 ko04940 map00250 map00410 map00430 map00650 map01100 map01110 map01120 map02024 map04727 map04940

Pfam Domains

Protein Families

Pyridoxal_deC

Protein Analysis

504

Amino Acids

56.72

Weight (kDa)

5.54

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	34 - 382	3e-103	Pyridoxal-dependent decarboxylase conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17760 AT3G17760
fragaria_vesca	FvH4_4g35930 FvH4_5g18010
malus_domestica	MD06G1235500.v1.1 MD16G1010800.v1.1
prunus_persica	Prupe.1G339900_v2.0.a1 Prupe.5G240300_v2.0.a1
pyrus_communis	pycom06g21060 pycom16g01050
rosa_chinensis	RchiOBHm_Chr4g0406101 RchiOBHm_Chr4g0445561 RchiOBHm_Chr7g0177601
rosa_laevigata	RLG00000005522 RLG00000005730
rosa_multiflora	Rmu_ssc0000253.1_g000007
rosa_roxburghii	Rroxscaffold_5G00386030
rosa_rugosa	Rorug04G0362500 Rorug06G0407700
rosa_samantha	Rh4AG423900 Rh4BG435900 Rh4CG450600 Rh4DG432300 Rh7AG007000 Rh7DG007100
rosa_wichuraiana	Rw4G036330 Rw7G000600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	3 cut(s)	18, 1090, 1292
AclWI	GGATC	2 cut(s)	385, 934
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	2 cut(s)	1098, 1449
AcuI	CTGAAG	3 cut(s)	275, 366, 557
AdeI	CACNNNGTG	1 cut(s)	1165
AfaI	GTAC	2 cut(s)	52, 272
AfiI	CCNNNNNNNGG	2 cut(s)	1288, 1413
AgsI	TTSAA	7 cut(s)	328, 533, 639, 1097, 1138, 1327, 1454
AjnI	CCWGG	3 cut(s)	200, 1125, 1426
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AloI	GAACNNNNNNTCC	2 cut(s)	1191, 1223
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	3 cut(s)	98, 698, 1291
AlwI	GGATC	2 cut(s)	385, 934
AlwNI	CAGNNNCTG	1 cut(s)	1385
AoxI	GGCC	5 cut(s)	183, 234, 403, 826, 838
ApeKI	GCWGC	7 cut(s)	125, 344, 427, 623, 737, 1152, 1367
ApoI	RAATTY	2 cut(s)	1098, 1449
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	2 cut(s)	75, 760
AspS9I	GGNCC	1 cut(s)	574
AsuHPI	GGTGA	5 cut(s)	16, 35, 271, 469, 937
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	1 cut(s)	1125
BalI	TGGCCA	1 cut(s)	828
BanII	GRGCYC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	7 cut(s)	137, 356, 439, 635, 724, 1164, 1354
BceAI	ACGGC	2 cut(s)	745, 1335
BciT130I	CCWGG	3 cut(s)	202, 1127, 1428
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	3 cut(s)	98, 698, 1291
BfaI	CTAG	6 cut(s)	407, 516, 632, 969, 1076, 1513
BfoI	RGCGCY	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	7 cut(s)	126, 345, 428, 624, 738, 1153, 1368
BlsI	GCNGC	7 cut(s)	127, 346, 429, 625, 739, 1154, 1369
Bme1390I	CCNGG	3 cut(s)	202, 1127, 1428
Bme18I	GGWCC	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	4 cut(s)	168, 210, 576, 1481
BmrFI	CCNGG	3 cut(s)	202, 1127, 1428
BmrI	ACTGGG	1 cut(s)	1016
BmsI	GCATC	2 cut(s)	87, 724
BmuI	ACTGGG	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	1125
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	1288, 1413
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	741, 1011, 1407
BseBI	CCWGG	3 cut(s)	202, 1127, 1428
BseDI	CCNNGG	1 cut(s)	1125
BseGI	GGATG	7 cut(s)	166, 210, 667, 716, 866, 1205, 1422
BseLI	CCNNNNNNNGG	2 cut(s)	1288, 1413
BseMII	CTCAG	2 cut(s)	998, 1320
BseNI	ACTGG	3 cut(s)	741, 1011, 1407
BseRI	GAGGAG	2 cut(s)	889, 1292
BseSI	GKGCMC	1 cut(s)	1125
BseXI	GCAGC	7 cut(s)	137, 356, 439, 635, 724, 1164, 1354
BseYI	CCCAGC	1 cut(s)	501
BsgI	GTGCAG	2 cut(s)	51, 512
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	5 cut(s)	185, 236, 405, 828, 840
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiSI	CCGG	5 cut(s)	21, 101, 212, 480, 1282
BslFI	GGGAC	3 cut(s)	68, 382, 800
BslI	CCNNNNNNNGG	2 cut(s)	1288, 1413
BsmAI	GTCTC	3 cut(s)	98, 698, 1291
BsmFI	GGGAC	3 cut(s)	68, 382, 800
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	5 cut(s)	185, 236, 405, 828, 840
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	169, 1063, 1125
Bsp143I	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
BspACI	CCGC	3 cut(s)	18, 1090, 1292
BspANI	GGCC	5 cut(s)	185, 236, 405, 828, 840
BspCNI	CTCAG	2 cut(s)	997, 1319
BspHI	TCATGA	2 cut(s)	93, 228
BspLI	GGNNCC	4 cut(s)	168, 210, 576, 1481
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	385, 934
BspTNI	GGTCTC	1 cut(s)	98
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	3 cut(s)	741, 1011, 1407
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	1125
BssMI	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
Bst2UI	CCWGG	3 cut(s)	202, 1127, 1428
Bst4CI	ACNGT	4 cut(s)	50, 373, 1165, 1387
BstC8I	GCNNGC	4 cut(s)	399, 403, 1157, 1227
BstDEI	CTNAG	2 cut(s)	984, 1306
BstF5I	GGATG	7 cut(s)	166, 210, 667, 716, 866, 1205, 1422
BstH2I	RGCGCY	1 cut(s)	761
BstHHI	GCGC	2 cut(s)	75, 760
BstKTI	GATC	8 cut(s)	9, 28, 37, 315, 380, 682, 929, 934
BstMAI	GTCTC	3 cut(s)	98, 698, 1291
BstMBI	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 407, 898
BstNI	CCWGG	3 cut(s)	202, 1127, 1428
BstSCI	CCNGG	3 cut(s)	200, 1125, 1426
BstSLI	GKGCMC	1 cut(s)	1125
BstV1I	GCAGC	7 cut(s)	137, 356, 439, 635, 724, 1164, 1354
BstX2I	RGATCY	2 cut(s)	377, 926
BstXI	CCANNNNNNTGG	2 cut(s)	205, 836
BstYI	RGATCY	2 cut(s)	377, 926
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	5 cut(s)	185, 236, 405, 828, 840
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	7 cut(s)	166, 210, 667, 716, 866, 1205, 1422
BtsI	GCAGTG	1 cut(s)	1340
BtsIMutI	CAGTG	6 cut(s)	282, 748, 1061, 1161, 1340, 1414
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	4 cut(s)	399, 403, 1157, 1227
CaiI	CAGNNNCTG	1 cut(s)	1385
CciI	TCATGA	2 cut(s)	93, 228
CfoI	GCGC	2 cut(s)	75, 760
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	51, 271
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviAII	CATG	5 cut(s)	94, 229, 262, 728, 1045
CviQI	GTAC	2 cut(s)	51, 271
DdeI	CTNAG	2 cut(s)	984, 1306
DpnI	GATC	8 cut(s)	8, 27, 36, 314, 379, 681, 928, 933
DpnII	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
DraI	TTTAAA	1 cut(s)	415
DraIII	CACNNNGTG	1 cut(s)	1165
EaeI	YGGCCR	1 cut(s)	826
EciI	GGCGGA	1 cut(s)	1307
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	3 cut(s)	275, 366, 557
EcoRII	CCWGG	3 cut(s)	200, 1125, 1426
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	5 cut(s)	97, 232, 265, 731, 1048
FaqI	GGGAC	3 cut(s)	68, 382, 800
FatI	CATG	5 cut(s)	93, 228, 261, 727, 1044
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	7 cut(s)	126, 345, 428, 624, 738, 1153, 1368
FokI	GGATG	7 cut(s)	173, 217, 674, 723, 873, 1212, 1429
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	7 cut(s)	126, 345, 428, 624, 738, 1153, 1368
FspBI	CTAG	6 cut(s)	407, 516, 632, 969, 1076, 1513
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	2 cut(s)	74, 759
GluI	GCNGC	7 cut(s)	126, 345, 428, 624, 738, 1153, 1368
GsaI	CCCAGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	761
HaeIII	GGCC	5 cut(s)	185, 236, 405, 828, 840
HapII	CCGG	5 cut(s)	21, 101, 212, 480, 1282
HhaI	GCGC	2 cut(s)	75, 760
Hin1II	CATG	5 cut(s)	97, 232, 265, 731, 1048
Hin6I	GCGC	2 cut(s)	73, 758
HinP1I	GCGC	2 cut(s)	73, 758
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	174, 295, 1299
HpaII	CCGG	5 cut(s)	21, 101, 212, 480, 1282
HphI	GGTGA	5 cut(s)	16, 35, 271, 469, 937
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	7 cut(s)	135, 294, 341, 385, 556, 931, 1309
Hpy188III	TCNNGA	8 cut(s)	10, 44, 63, 94, 193, 229, 773, 808
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	16, 899
HpyAV	CCTTC	4 cut(s)	440, 532, 1064, 1406
HpyCH4III	ACNGT	4 cut(s)	50, 373, 1165, 1387
HpyCH4V	TGCA	6 cut(s)	32, 493, 623, 1044, 1235, 1370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 407, 898
HpyF3I	CTNAG	2 cut(s)	984, 1306
Hsp92II	CATG	5 cut(s)	97, 232, 265, 731, 1048
HspAI	GCGC	2 cut(s)	73, 758
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
LmnI	GCTCC	7 cut(s)	172, 208, 337, 341, 482, 675, 1284
Lsp1109I	GCAGC	7 cut(s)	137, 356, 439, 635, 724, 1164, 1354
LweI	GCATC	2 cut(s)	87, 724
MaeI	CTAG	6 cut(s)	407, 516, 632, 969, 1076, 1513
MaeIII	GTNAC	5 cut(s)	193, 277, 475, 1019, 1375
MalI	GATC	8 cut(s)	8, 27, 36, 314, 379, 681, 928, 933
MboI	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
MboII	GAAGA	4 cut(s)	372, 674, 706, 1244
MflI	RGATCY	2 cut(s)	377, 926
MhlI	GDGCHC	3 cut(s)	169, 1063, 1125
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	7 cut(s)	390, 440, 916, 978, 1098, 1332, 1449
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	2 cut(s)	168, 1293
MmeI	TCCRAC	1 cut(s)	838
Mox20I	TGGCCA	1 cut(s)	828
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	3 cut(s)	414, 675, 690
MslI	CAYNNNNRTG	4 cut(s)	203, 732, 834, 1118
Msp20I	TGGCCA	1 cut(s)	828
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	5 cut(s)	21, 101, 212, 480, 1282
MspR9I	CCNGG	3 cut(s)	202, 1127, 1428
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	3 cut(s)	202, 1127, 1428
MwoI	GCNNNNNNNGC	3 cut(s)	353, 407, 898
NdeII	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
NlaIII	CATG	5 cut(s)	97, 232, 265, 731, 1048
NlaIV	GGNNCC	4 cut(s)	168, 210, 576, 1481
NmuCI	GTSAC	4 cut(s)	193, 277, 475, 1375
NsbI	TGCGCA	1 cut(s)	74
PagI	TCATGA	2 cut(s)	93, 228
PctI	GAATGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	578
PkrI	GCNGC	7 cut(s)	127, 346, 429, 625, 739, 1154, 1369
PleI	GAGTC	2 cut(s)	168, 1293
PpsI	GAGTC	2 cut(s)	168, 1293
Psp6I	CCWGG	3 cut(s)	200, 1125, 1426
PspFI	CCCAGC	1 cut(s)	501
PspGI	CCWGG	3 cut(s)	200, 1125, 1426
PspN4I	GGNNCC	4 cut(s)	168, 210, 576, 1481
PspPI	GGNCC	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	2 cut(s)	377, 926
PsyI	GACNNNGTC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	52, 272
RsaNI	GTAC	2 cut(s)	51, 271
RseI	CAYNNNNRTG	4 cut(s)	203, 732, 834, 1118
SaqAI	TTAA	3 cut(s)	414, 675, 690
SatI	GCNGC	7 cut(s)	126, 345, 428, 624, 738, 1153, 1368
Sau3AI	GATC	8 cut(s)	6, 25, 34, 312, 377, 679, 926, 931
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	2 cut(s)	168, 1293
ScrFI	CCNGG	3 cut(s)	202, 1127, 1428
SduI	GDGCHC	3 cut(s)	169, 1063, 1125
SfaNI	GCATC	2 cut(s)	87, 724
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	4 cut(s)	203, 732, 834, 1118
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	7 cut(s)	390, 440, 916, 978, 1098, 1332, 1449
SsiI	CCGC	3 cut(s)	18, 1090, 1292
SspMI	CTAG	6 cut(s)	407, 516, 632, 969, 1076, 1513
StyD4I	CCNGG	3 cut(s)	200, 1125, 1426
TaaI	ACNGT	4 cut(s)	50, 373, 1165, 1387
TaqI	TCGA	3 cut(s)	11, 1314, 1389
TasI	AATT	7 cut(s)	390, 440, 916, 978, 1098, 1332, 1449
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	3 cut(s)	414, 675, 690
Tru9I	TTAA	3 cut(s)	414, 675, 690
TscAI	CASTG	6 cut(s)	289, 748, 1068, 1168, 1347, 1414
TseFI	GTSAC	4 cut(s)	193, 277, 475, 1375
TseI	GCWGC	7 cut(s)	125, 344, 427, 623, 737, 1152, 1367
Tsp45I	GTSAC	4 cut(s)	193, 277, 475, 1375
TspDTI	ATGAA	5 cut(s)	82, 257, 716, 1376, 1407
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	6 cut(s)	289, 748, 1068, 1168, 1347, 1414
Tth111I	GACNNNGTC	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	2 cut(s)	1098, 1449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1414
XspI	CTAG	6 cut(s)	407, 516, 632, 969, 1076, 1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.