FvH4_5g18010

Belongs to the group II decarboxylase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
10341862 .. 10346093
4232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18010.t1

Sequence Viewer

Length: 1515 bp
ATGGTGATCTCTTCGACCTCCGGTGACCGTTCAGATCACTTTCTGGACTGCACCTTTGCTTCCAGATATGTGCGCAATCCCGTCCCCAAGTTCAGGATGCCGGAGAGTTCACAACCCAAAGAGGCAGCTTATCAGATAATAAACGACGAGCTTATGCTGGATGGGACTCCGAGGCTCAACTTGGCCTCATTTGTGACCACCTGGATGGAGCCGGAATGCGAAAAAATCATGATGGCCTCCATGAACAAGAACTATGTCGACATGGATGAGTACCCTGTCACCACTGAACTTCAGAATCGCTGTGTGAATATGATTTCCCACCTTTTCAATGCTCCCATCGGAGAAGCTGAAACTGCTATTGGTGTGGGAACGGTAGGATCTTCAGAGGCAATAATGCTAGCAGGCCTGGCTTTTAAAAGAAAATGGCAGCACAGGAGAAAATTAGAAGGCAAACCCTTTGACAAACCCAACATTGTGACTGGAGCTAACGTGCAGGTTTGCTGGGAAAAGTTTGCTAGGTATTTCGAGGTCGAACTGAAGGAGGTGAAGCTATCAGATGGATACTATGTGATGGACCCTGTCAAAGCAGTTGAGATGGTTGATGAGAACACTATCTGTGTTGCAGCTATTCTAGGTTCAACCCTGACGGGAGAGTTTGAGGATGTGAAACTCCTTAATGACCTTCTTATTAAGAAGAATAAGGAGACAGGATGGGAAACTCCCATTCATGTTGATGCTGCCAGTGGAGGCTTTATAGCTCCATTCCTTTATCCTGATATTGAGTGGGACTTCCGTTTGCCATTAGTCAAGAGTATCAATGTAAGTGGCCACAAGTATGGCCTTGTATATGCTGGTGTTGGATGGGTTGTGTGGAGGAGTAAAGAGGACTTGCCCGATGAGCTTGTGTTTCACATCAATTATCTTGGATCTGACCAACCAACTTTCACCCTCAACTTTTCCAAAGGGTCTAGCCAGATAATTGCTCAGTACTATCAGTTTATACGTCTGGGATTTGAGGGTTACAAAAATGTGATGGAAAACTGCATGGAGAATGCAAGAGCACTGAAAGAAGGACTATTGAGTACAGGTCGATTTAAAATTCTTTCAAAAGACATAGGAGTGCCCCTTGTGGCTTTCACTCTAAAAGACAGCAGCAAGCACACTGTGTTTGAGATAGCTGATACTTTGAGAAAGTATGGATGGATAGTTCCAGCCTACACTATGCCAGCCAATGCAGAACATGTTGCTGTTCTTCGCGTGGTTGTCAGGGAGGACTTTAGTCGGAGCTTGGCAGAGAGACTCCTCTCAGACATCGACAAGGTTTTGAAAGAAATCGACACACTGCCAAGCCGCGTGTCTATGAAAGCTGCACATGTCTCGGCTACTGTCGACGAAGTAGTCAATGCCAGTGAAGGGATGGTAAATGCTGCTAAGAAAAGTATAGAGGAGATTCAGAAAGAGGTAGCAACATATTGGAAGAACCTTGTGGAAAGAAAGAGAACAGGTGCATGCTAG

Protein Analysis

505

Amino Acids

56.73

Weight (kDa)

5.75

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyridoxal_deC PF00282 34 - 382 1.7e-101 Pyridoxal-dependent decarboxylase conserved domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1397
Acc16I TGCGCA 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 484
AccI GTMKAC 2 cut(s) 258, 1389
AccII CGCG 2 cut(s) 1257, 1353
AciI CCGC 1 cut(s) 1351
AclWI GGATC 2 cut(s) 385, 934
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 1 cut(s) 1098
AcuI CTGAAG 3 cut(s) 275, 366, 557
AdeI CACNNNGTG 1 cut(s) 1165
AfaI GTAC 3 cut(s) 272, 989, 1084
AfiI CCNNNNNNNGG 2 cut(s) 93, 1413
AflIII ACRYGT 2 cut(s) 1240, 1372
AgsI TTSAA 4 cut(s) 328, 639, 1107, 1327
AjnI CCWGG 2 cut(s) 200, 405
AjuI GAANNNNNNNTTGG 2 cut(s) 342, 374
AloI GAACNNNNNNTCC 2 cut(s) 1191, 1223
Alw21I GWGCWC 1 cut(s) 1063
Alw26I GTCTC 3 cut(s) 698, 1291, 1381
AlwI GGATC 2 cut(s) 385, 934
AoxI GGCC 5 cut(s) 183, 234, 403, 826, 838
ApeKI GCWGC 7 cut(s) 125, 427, 623, 737, 1152, 1367, 1427
ApoI RAATTY 1 cut(s) 1098
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 5 cut(s) 16, 35, 271, 556, 937
AsuNHI GCTAGC 1 cut(s) 397
AvaII GGWCC 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 1125
BalI TGGCCA 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 1063
BbvI GCAGC 7 cut(s) 137, 439, 635, 724, 1164, 1354, 1414
BcgI CGANNNNNNTGC 2 cut(s) 1359, 1393
BciT130I CCWGG 2 cut(s) 202, 407
BciVI GTATCC 1 cut(s) 554
BcoDI GTCTC 3 cut(s) 698, 1291, 1381
BfaI CTAG 5 cut(s) 398, 516, 632, 969, 1513
BfuAI ACCTGC 1 cut(s) 484
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 8 cut(s) 126, 428, 624, 738, 1153, 1351, 1368, 1428
BlsI GCNGC 8 cut(s) 127, 429, 625, 739, 1154, 1352, 1369, 1429
BmcAI AGTACT 1 cut(s) 989
Bme1390I CCNGG 2 cut(s) 202, 407
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 2 cut(s) 210, 576
BmrFI CCNGG 2 cut(s) 202, 407
BmsI GCATC 2 cut(s) 87, 724
BmtI GCTAGC 1 cut(s) 401
BoxI GACNNNNGTC 1 cut(s) 1278
BpmI CTGGAG 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 1413
Bse1I ACTGG 3 cut(s) 484, 741, 1407
BseBI CCWGG 2 cut(s) 202, 407
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 9 cut(s) 102, 166, 210, 271, 667, 716, 866, 1205, 1422
BseLI CCNNNNNNNGG 2 cut(s) 93, 1413
BseMII CTCAG 2 cut(s) 998, 1320
BseNI ACTGG 3 cut(s) 484, 741, 1407
BseRI GAGGAG 3 cut(s) 889, 1292, 1460
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 7 cut(s) 137, 439, 635, 724, 1164, 1354, 1414
BseYI CCCAGC 1 cut(s) 501
BsgI GTGCAG 3 cut(s) 34, 512, 1353
Bsh1236I CGCG 2 cut(s) 1257, 1353
BshFI GGCC 5 cut(s) 185, 236, 405, 828, 840
BsiHKAI GWGCWC 1 cut(s) 1063
BsiSI CCGG 3 cut(s) 21, 101, 212
BslFI GGGAC 3 cut(s) 68, 178, 800
BslI CCNNNNNNNGG 2 cut(s) 93, 1413
BsmAI GTCTC 3 cut(s) 698, 1291, 1381
BsmFI GGGAC 3 cut(s) 68, 178, 800
BsmI GAATGC 2 cut(s) 221, 1057
BsnI GGCC 5 cut(s) 185, 236, 405, 828, 840
Bsp1286I GDGCHC 2 cut(s) 1063, 1125
Bsp143I GATC 4 cut(s) 6, 34, 377, 926
BspACI CCGC 1 cut(s) 1351
BspANI GGCC 5 cut(s) 185, 236, 405, 828, 840
BspCNI CTCAG 2 cut(s) 997, 1319
BspFNI CGCG 2 cut(s) 1257, 1353
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 2 cut(s) 210, 576
BspMI ACCTGC 1 cut(s) 484
BspOI GCTAGC 1 cut(s) 401
BspPI GGATC 2 cut(s) 385, 934
BsrI ACTGG 3 cut(s) 484, 741, 1407
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 4 cut(s) 6, 34, 377, 926
Bst2UI CCWGG 2 cut(s) 202, 407
Bst4CI ACNGT 4 cut(s) 29, 373, 1165, 1387
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 5 cut(s) 399, 403, 1157, 1227, 1510
BstDEI CTNAG 3 cut(s) 984, 1306, 1431
BstEII GGTNACC 1 cut(s) 23
BstF5I GGATG 9 cut(s) 102, 166, 210, 271, 667, 716, 866, 1205, 1422
BstFNI CGCG 2 cut(s) 1257, 1353
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 9, 37, 380, 929
BstMAI GTCTC 3 cut(s) 698, 1291, 1381
BstMBI GATC 4 cut(s) 6, 34, 377, 926
BstMWI GCNNNNNNNGC 3 cut(s) 353, 407, 898
BstNI CCWGG 2 cut(s) 202, 407
BstNSI RCATGY 3 cut(s) 1244, 1376, 1512
BstPAI GACNNNNGTC 1 cut(s) 1278
BstPI GGTNACC 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 200, 405
BstSLI GKGCMC 1 cut(s) 1125
BstUI CGCG 2 cut(s) 1257, 1353
BstV1I GCAGC 7 cut(s) 137, 439, 635, 724, 1164, 1354, 1414
BstX2I RGATCY 2 cut(s) 377, 926
BstXI CCANNNNNNTGG 2 cut(s) 205, 836
BstYI RGATCY 2 cut(s) 377, 926
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 5 cut(s) 185, 236, 405, 828, 840
BtsCI GGATG 9 cut(s) 102, 166, 210, 271, 667, 716, 866, 1205, 1422
BtsI GCAGTG 1 cut(s) 1340
BtsIMutI CAGTG 6 cut(s) 282, 748, 1061, 1161, 1340, 1414
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 5 cut(s) 399, 403, 1157, 1227, 1510
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 3 cut(s) 271, 988, 1083
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 8 cut(s) 229, 241, 262, 728, 1045, 1241, 1373, 1509
CviQI GTAC 3 cut(s) 271, 988, 1083
DdeI CTNAG 3 cut(s) 984, 1306, 1431
DpnI GATC 4 cut(s) 8, 36, 379, 928
DpnII GATC 4 cut(s) 6, 34, 377, 926
DraI TTTAAA 2 cut(s) 415, 1096
DraIII CACNNNGTG 1 cut(s) 1165
DrdI GACNNNNNNGTC 1 cut(s) 1397
DseDI GACNNNNNNGTC 1 cut(s) 1397
EaeI YGGCCR 1 cut(s) 826
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 3 cut(s) 275, 366, 557
Eco91I GGTNACC 1 cut(s) 23
EcoO65I GGTNACC 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 200, 405
FaeI CATG 8 cut(s) 232, 244, 265, 731, 1048, 1244, 1376, 1512
FaqI GGGAC 3 cut(s) 68, 178, 800
FatI CATG 8 cut(s) 228, 240, 261, 727, 1044, 1240, 1372, 1508
FblI GTMKAC 2 cut(s) 258, 1389
Fnu4HI GCNGC 8 cut(s) 126, 428, 624, 738, 1153, 1351, 1368, 1428
FokI GGATG 9 cut(s) 109, 173, 217, 278, 674, 723, 873, 1212, 1429
Fsp4HI GCNGC 8 cut(s) 126, 428, 624, 738, 1153, 1351, 1368, 1428
FspBI CTAG 5 cut(s) 398, 516, 632, 969, 1513
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 1 cut(s) 74
GluI GCNGC 8 cut(s) 126, 428, 624, 738, 1153, 1351, 1368, 1428
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 5 cut(s) 185, 236, 405, 828, 840
HapII CCGG 3 cut(s) 21, 101, 212
HhaI GCGC 1 cut(s) 75
Hin1II CATG 8 cut(s) 232, 244, 265, 731, 1048, 1244, 1376, 1512
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 2 cut(s) 259, 1390
HindII GTYRAC 2 cut(s) 259, 1390
HinfI GANTC 4 cut(s) 166, 295, 1299, 1450
HpaII CCGG 3 cut(s) 21, 101, 212
HphI GGTGA 5 cut(s) 16, 35, 271, 556, 937
Hpy166II GTNNAC 3 cut(s) 110, 259, 1390
Hpy188III TCNNGA 6 cut(s) 44, 63, 94, 229, 773, 808
Hpy8I GTNNAC 3 cut(s) 110, 259, 1390
Hpy99I CGWCG 2 cut(s) 149, 1394
HpyAV CCTTC 5 cut(s) 440, 532, 692, 1064, 1406
HpyCH4III ACNGT 4 cut(s) 29, 373, 1165, 1387
HpyCH4IV ACGT 2 cut(s) 489, 1003
HpyCH4V TGCA 8 cut(s) 51, 493, 623, 1044, 1055, 1235, 1370, 1508
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 407, 898
HpyF3I CTNAG 3 cut(s) 984, 1306, 1431
HpySE526I ACGT 2 cut(s) 489, 1003
Hsp92II CATG 8 cut(s) 232, 244, 265, 731, 1048, 1244, 1376, 1512
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 6, 34, 377, 926
LmnI GCTCC 5 cut(s) 208, 337, 482, 763, 1284
Lsp1109I GCAGC 7 cut(s) 137, 439, 635, 724, 1164, 1354, 1414
LweI GCATC 2 cut(s) 87, 724
MaeI CTAG 5 cut(s) 398, 516, 632, 969, 1513
MaeII ACGT 2 cut(s) 489, 1003
MaeIII GTNAC 5 cut(s) 23, 193, 277, 475, 1019
MalI GATC 4 cut(s) 8, 36, 379, 928
MboI GATC 4 cut(s) 6, 34, 377, 926
MboII GAAGA 5 cut(s) 3, 372, 706, 1244, 1489
MflI RGATCY 2 cut(s) 377, 926
MhlI GDGCHC 2 cut(s) 1063, 1125
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 4 cut(s) 440, 916, 978, 1098
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 160, 1293
MmeI TCCRAC 2 cut(s) 838, 1262
Mox20I TGGCCA 1 cut(s) 828
MscI TGGCCA 1 cut(s) 828
MseI TTAA 4 cut(s) 414, 675, 690, 1095
MslI CAYNNNNRTG 4 cut(s) 203, 732, 834, 1118
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 3 cut(s) 21, 101, 212
MspR9I CCNGG 2 cut(s) 202, 407
Mva1269I GAATGC 2 cut(s) 221, 1057
MvaI CCWGG 2 cut(s) 202, 407
MvnI CGCG 2 cut(s) 1257, 1353
MwoI GCNNNNNNNGC 3 cut(s) 353, 407, 898
NdeII GATC 4 cut(s) 6, 34, 377, 926
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 8 cut(s) 232, 244, 265, 731, 1048, 1244, 1376, 1512
NlaIV GGNNCC 2 cut(s) 210, 576
NmeAIII GCCGAG 1 cut(s) 1358
NmuCI GTSAC 4 cut(s) 23, 193, 277, 475
NsbI TGCGCA 1 cut(s) 74
NspI RCATGY 3 cut(s) 1244, 1376, 1512
PaeI GCATGC 1 cut(s) 1512
PagI TCATGA 1 cut(s) 228
PceI AGGCCT 1 cut(s) 405
PciI ACATGT 2 cut(s) 1240, 1372
PctI GAATGC 2 cut(s) 221, 1057
PfeI GAWTC 2 cut(s) 295, 1450
PflFI GACNNNGTC 1 cut(s) 578
PkrI GCNGC 8 cut(s) 127, 429, 625, 739, 1154, 1352, 1369, 1429
PleI GAGTC 2 cut(s) 160, 1293
PpsI GAGTC 2 cut(s) 160, 1293
PscI ACATGT 2 cut(s) 1240, 1372
PshAI GACNNNNGTC 1 cut(s) 1278
Psp6I CCWGG 2 cut(s) 200, 405
PspEI GGTNACC 1 cut(s) 23
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 200, 405
PspN4I GGNNCC 2 cut(s) 210, 576
PspPI GGNCC 1 cut(s) 574
PsuI RGATCY 2 cut(s) 377, 926
PsyI GACNNNGTC 1 cut(s) 578
RsaI GTAC 3 cut(s) 272, 989, 1084
RsaNI GTAC 3 cut(s) 271, 988, 1083
RseI CAYNNNNRTG 4 cut(s) 203, 732, 834, 1118
SalI GTCGAC 2 cut(s) 257, 1388
SaqAI TTAA 4 cut(s) 414, 675, 690, 1095
SatI GCNGC 8 cut(s) 126, 428, 624, 738, 1153, 1351, 1368, 1428
Sau3AI GATC 4 cut(s) 6, 34, 377, 926
Sau96I GGNCC 1 cut(s) 574
ScaI AGTACT 1 cut(s) 989
SchI GAGTC 2 cut(s) 160, 1293
ScrFI CCNGG 2 cut(s) 202, 407
SduI GDGCHC 2 cut(s) 1063, 1125
SfaNI GCATC 2 cut(s) 87, 724
SinI GGWCC 1 cut(s) 574
SmiMI CAYNNNNRTG 4 cut(s) 203, 732, 834, 1118
SphI GCATGC 1 cut(s) 1512
Sse9I AATT 4 cut(s) 440, 916, 978, 1098
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 1 cut(s) 1351
SspMI CTAG 5 cut(s) 398, 516, 632, 969, 1513
StuI AGGCCT 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 200, 405
TaaI ACNGT 4 cut(s) 29, 373, 1165, 1387
TaiI ACGT 2 cut(s) 492, 1006
TaqI TCGA 8 cut(s) 14, 258, 525, 531, 1090, 1314, 1335, 1389
TasI AATT 4 cut(s) 440, 916, 978, 1098
TatI WGTACW 2 cut(s) 987, 1082
TauI GCSGC 1 cut(s) 1353
TfiI GAWTC 2 cut(s) 295, 1450
Tru1I TTAA 4 cut(s) 414, 675, 690, 1095
Tru9I TTAA 4 cut(s) 414, 675, 690, 1095
TscAI CASTG 6 cut(s) 289, 748, 1068, 1168, 1347, 1414
TseFI GTSAC 4 cut(s) 23, 193, 277, 475
TseI GCWGC 7 cut(s) 125, 427, 623, 737, 1152, 1367, 1427
Tsp45I GTSAC 4 cut(s) 23, 193, 277, 475
TspDTI ATGAA 3 cut(s) 257, 716, 1376
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 6 cut(s) 289, 748, 1068, 1168, 1347, 1414
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 1 cut(s) 1098
XceI RCATGY 3 cut(s) 1244, 1376, 1512
XcmI CCANNNNNNNNNTGG 1 cut(s) 1414
XmiI GTMKAC 2 cut(s) 258, 1389
XspI CTAG 5 cut(s) 398, 516, 632, 969, 1513
ZrmI AGTACT 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.