AT3G17810

dihydroorotate dehydrogenase family protein dihydroorotate oxidase family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6093990 .. 6096688
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17810.1

Sequence Viewer

Length: 1281 bp
ATGGCTTCCATGAGTTTCGCCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCATCCTCTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCGAATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCCAATCCTTTCGTGATCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGATGAAGGTTGGGGGGCCGTCATCGCCAAAACCGTATCTTTAGATGCATCCAAAGTTATCAACGTGACACCTAGATATGCTCGGCTACGAACCGGATCCAATGGCTCAGCCAAAACAGATGTAATTGGGTGGCAGAACATAGAACTCATCAGTGACAGACCTCTTGAAACCATGCTCAAAGAGTTTGAGCGGTTGAAAAAAGAGTATCCTGATCGGATTCTGATTGCTTCAGTCATGGAGGAATATAACAAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAAATCAACTTCTCGTGTCCTCATGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAAGATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTATGGGCTAAGATGACTCCTAATATTACTGACATAACTGAGCCTGCTAGGGTGTCACTAAAATCCGGATGTGAAGGAATTGCAGCGATCAATACAATCATGAGTGTAATGGGAATTGATATGAAGACGTTGCGTCCTGAGCCATGCGTTGAAGGTTACTCCACTCCAGGGGGATACTCTTATAAGGCCGTTCGCCCAATTGCACTGGCAAAAGTTATGAACATTGCCAAAATGATGAAATCTGAGTTTAGTGAGGATCGCTCGCTTTCGGGTATTGGAGGAGTTGAAACTGGCTATGATGCCGCTGAATTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCACGGCTATGGTCATGTGAAAACCCTTTGCGCTGAGCTGAAAGATTTCATGAAACAACACAACTTCTCTACAATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACAACACACACAGATTTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGAGAAAAGCTGAGAAGAGAGGCTTGAAATCTGATAAAGATTGGACCGGGGATGGGTTCGTGAAGGAGACTGAGAGTATGGTTTCTAACTAA

Protein Analysis

426

Amino Acids

46.85

Weight (kDa)

6.37

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHO_dh PF01180 52 - 362 5.6e-35 Dihydroorotate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 2 cut(s) 218, 602
AccBSI CCGCTC 1 cut(s) 439
AccIII TCCGGA 1 cut(s) 740
AciI CCGC 7 cut(s) 101, 132, 135, 439, 606, 645, 978
AclWI GGATC 5 cut(s) 68, 339, 352, 939, 1006
AcsI RAATTY 1 cut(s) 983
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 3 cut(s) 220, 1011, 1139
AfiI CCNNNNNNNGG 3 cut(s) 87, 843, 1242
AflII CTTAAG 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 1022
AgsI TTSAA 6 cut(s) 25, 416, 445, 827, 962, 1216
AhdI GACNNNNNGTC 1 cut(s) 807
AjnI CCWGG 1 cut(s) 841
AleI CACNNNNGTG 1 cut(s) 1025
AluBI AGCT 5 cut(s) 65, 517, 665, 1072, 1199
AluI AGCT 5 cut(s) 65, 517, 665, 1072, 1199
Alw26I GTCTC 2 cut(s) 1162, 1250
AlwI GGATC 5 cut(s) 68, 339, 352, 939, 1006
AlwNI CAGNNNCTG 1 cut(s) 674
Aor13HI TCCGGA 1 cut(s) 740
AoxI GGCC 3 cut(s) 172, 264, 861
ApeKI GCWGC 2 cut(s) 758, 1132
ApoI RAATTY 1 cut(s) 983
AseI ATTAAT 1 cut(s) 654
AsiGI ACCGGT 1 cut(s) 1022
Asp700I GAANNNNTTC 3 cut(s) 29, 987, 1079
Asp718I GGTACC 1 cut(s) 218
AspLEI GCGC 3 cut(s) 594, 628, 1067
AspS9I GGNCC 3 cut(s) 209, 264, 1233
AsuC2I CCSGG 2 cut(s) 216, 1237
AvaII GGWCC 2 cut(s) 209, 1233
BamHI GGATCC 1 cut(s) 344
BanI GGYRCC 2 cut(s) 218, 602
BauI CACGAG 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 770, 1119
BccI CCATC 3 cut(s) 85, 642, 1235
BceAI ACGGC 3 cut(s) 251, 848, 1054
BciT130I CCWGG 1 cut(s) 843
BciVI GTATCC 2 cut(s) 465, 842
BcnI CCSGG 2 cut(s) 216, 1237
BcoDI GTCTC 2 cut(s) 1162, 1250
BfaI CTAG 3 cut(s) 108, 321, 723
BfmI CTRYAG 2 cut(s) 666, 1133
BfrI CTTAAG 1 cut(s) 119
BfuI GTATCC 2 cut(s) 465, 842
BglII AGATCT 1 cut(s) 123
BisI GCNGC 5 cut(s) 135, 606, 759, 978, 1133
BlpI GCTNAGC 2 cut(s) 355, 1068
BlsI GCNGC 5 cut(s) 136, 607, 760, 979, 1134
BmcAI AGTACT 1 cut(s) 1139
Bme1390I CCNGG 3 cut(s) 216, 843, 1237
Bme18I GGWCC 2 cut(s) 209, 1233
BmeRI GACNNNNNGTC 1 cut(s) 807
BmgT120I GGNCC 3 cut(s) 209, 264, 1233
BmiI GGNNCC 6 cut(s) 147, 210, 220, 265, 346, 604
BmrFI CCNGG 3 cut(s) 216, 843, 1237
BmsI GCATC 5 cut(s) 283, 305, 538, 964, 1023
BpiI GAAGAC 1 cut(s) 806
BplI GAGNNNNNCTC 2 cut(s) 920, 952
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 813
Bpu1102I GCTNAGC 2 cut(s) 355, 1068
BpuMI CCSGG 2 cut(s) 216, 1237
BsaJI CCNNGG 3 cut(s) 842, 994, 1236
BsaWI WCCGGW 3 cut(s) 341, 740, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 843, 1242
Bse118I RCCGGY 1 cut(s) 1022
Bse1I ACTGG 3 cut(s) 544, 885, 970
Bse3DI GCAATG 1 cut(s) 897
BseAI TCCGGA 1 cut(s) 740
BseBI CCWGG 1 cut(s) 843
BseDI CCNNGG 3 cut(s) 842, 994, 1236
BseGI GGATG 5 cut(s) 77, 296, 653, 749, 1246
BseLI CCNNNNNNNGG 3 cut(s) 87, 843, 1242
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 8 cut(s) 169, 369, 705, 804, 909, 1059, 1191, 1251
BseNI ACTGG 3 cut(s) 544, 885, 970
BseRI GAGGAG 2 cut(s) 34, 969
BseXI GCAGC 2 cut(s) 770, 1119
Bsh1285I CGRYCG 1 cut(s) 526
BshFI GGCC 3 cut(s) 174, 266, 863
BshNI GGYRCC 2 cut(s) 218, 602
BshTI ACCGGT 1 cut(s) 1022
BsiEI CGRYCG 1 cut(s) 526
BsiSI CCGG 6 cut(s) 88, 215, 342, 741, 1023, 1236
BslI CCNNNNNNNGG 3 cut(s) 87, 843, 1242
BsmAI GTCTC 2 cut(s) 1162, 1250
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 3 cut(s) 174, 266, 863
Bsp13I TCCGGA 1 cut(s) 740
Bsp1407I TGTACA 1 cut(s) 1009
Bsp143I GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
Bsp1720I GCTNAGC 2 cut(s) 355, 1068
BspACI CCGC 7 cut(s) 101, 132, 135, 439, 606, 645, 978
BspANI GGCC 3 cut(s) 174, 266, 863
BspCNI CTCAG 8 cut(s) 168, 368, 706, 805, 910, 1060, 1192, 1252
BspEI TCCGGA 1 cut(s) 740
BspHI TCATGA 3 cut(s) 234, 774, 1083
BspLI GGNNCC 6 cut(s) 147, 210, 220, 265, 346, 604
BspMAI CTGCAG 1 cut(s) 1137
BspPI GGATC 5 cut(s) 68, 339, 352, 939, 1006
BspQI GCTCTTC 1 cut(s) 507
BspT107I GGYRCC 2 cut(s) 218, 602
BspTI CTTAAG 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 897
BsrFI RCCGGY 1 cut(s) 1022
BsrGI TGTACA 1 cut(s) 1009
BsrI ACTGG 3 cut(s) 544, 885, 970
BssAI RCCGGY 1 cut(s) 1022
BssECI CCNNGG 3 cut(s) 842, 994, 1236
BssMI GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
BssSI CACGAG 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 994
Bst2BI CACGAG 1 cut(s) 568
Bst2UI CCWGG 1 cut(s) 843
Bst4CI ACNGT 6 cut(s) 166, 232, 283, 527, 670, 1009
Bst6I CTCTTC 5 cut(s) 133, 233, 507, 1107, 1199
BstAFI CTTAAG 1 cut(s) 119
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstAUI TGTACA 1 cut(s) 1009
BstC8I GCNNGC 2 cut(s) 720, 938
BstDEI CTNAG 9 cut(s) 155, 355, 684, 714, 813, 918, 1068, 1200, 1260
BstF5I GGATG 5 cut(s) 77, 296, 653, 749, 1246
BstHHI GCGC 3 cut(s) 594, 628, 1067
BstKTI GATC 9 cut(s) 76, 126, 154, 201, 347, 463, 765, 934, 1001
BstMAI GTCTC 2 cut(s) 1162, 1250
BstMBI GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
BstMCI CGRYCG 1 cut(s) 526
BstMWI GCNNNNNNNGC 3 cut(s) 272, 814, 1132
BstNI CCWGG 1 cut(s) 843
BstSCI CCNGG 3 cut(s) 214, 841, 1235
BstSFI CTRYAG 2 cut(s) 666, 1133
BstV1I GCAGC 2 cut(s) 770, 1119
BstV2I GAAGAC 1 cut(s) 806
BstX2I RGATCY 2 cut(s) 123, 344
BstYI RGATCY 2 cut(s) 123, 344
BsuI GTATCC 2 cut(s) 465, 842
BsuRI GGCC 3 cut(s) 174, 266, 863
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 5 cut(s) 77, 296, 653, 749, 1246
BtsIMutI CAGTG 4 cut(s) 162, 163, 406, 878
Cac8I GCNNGC 2 cut(s) 720, 938
CaiI CAGNNNCTG 1 cut(s) 674
CciI TCATGA 3 cut(s) 234, 774, 1083
CfoI GCGC 3 cut(s) 594, 628, 1067
Cfr10I RCCGGY 1 cut(s) 1022
Cfr13I GGNCC 3 cut(s) 209, 264, 1233
CseI GACGC 1 cut(s) 797
Csp6I GTAC 3 cut(s) 219, 1010, 1138
CspAI ACCGGT 1 cut(s) 1022
CviAII CATG 9 cut(s) 10, 235, 421, 484, 578, 775, 819, 1049, 1084
CviQI GTAC 3 cut(s) 219, 1010, 1138
DdeI CTNAG 9 cut(s) 155, 355, 684, 714, 813, 918, 1068, 1200, 1260
DpnI GATC 9 cut(s) 75, 125, 153, 200, 346, 462, 764, 933, 1000
DpnII GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
DriI GACNNNNNGTC 1 cut(s) 807
Eam1104I CTCTTC 5 cut(s) 133, 233, 507, 1107, 1199
Eam1105I GACNNNNNGTC 1 cut(s) 807
EarI CTCTTC 5 cut(s) 133, 233, 507, 1107, 1199
EciI GGCGGA 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 994
Eco47I GGWCC 2 cut(s) 209, 1233
Eco57I CTGAAG 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 994
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 994
FaeI CATG 9 cut(s) 13, 238, 424, 487, 581, 778, 822, 1052, 1087
FalI AAGNNNNNCTT 4 cut(s) 230, 262, 1196, 1228
FatI CATG 9 cut(s) 9, 234, 420, 483, 577, 774, 818, 1048, 1083
Fnu4HI GCNGC 5 cut(s) 135, 606, 759, 978, 1133
FokI GGATG 5 cut(s) 64, 283, 660, 756, 1253
Fsp4HI GCNGC 5 cut(s) 135, 606, 759, 978, 1133
FspBI CTAG 3 cut(s) 108, 321, 723
GlaI GCGC 3 cut(s) 593, 627, 1066
GluI GCNGC 5 cut(s) 135, 606, 759, 978, 1133
GsuI CTGGAG 1 cut(s) 825
HaeIII GGCC 3 cut(s) 174, 266, 863
HapII CCGG 6 cut(s) 88, 215, 342, 741, 1023, 1236
HgaI GACGC 1 cut(s) 797
HhaI GCGC 3 cut(s) 594, 628, 1067
Hin1II CATG 9 cut(s) 13, 238, 424, 487, 581, 778, 822, 1052, 1087
Hin6I GCGC 3 cut(s) 592, 626, 1065
HinP1I GCGC 3 cut(s) 592, 626, 1065
HinfI GANTC 5 cut(s) 25, 39, 140, 466, 691
HpaII CCGG 6 cut(s) 88, 215, 342, 741, 1023, 1236
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 6 cut(s) 145, 465, 471, 919, 1121, 1222
Hpy8I GTNNAC 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 638
HpyAV CCTTC 4 cut(s) 248, 743, 821, 1246
HpyCH4III ACNGT 6 cut(s) 166, 232, 283, 527, 670, 1009
HpyCH4IV ACGT 2 cut(s) 312, 803
HpyCH4V TGCA 6 cut(s) 296, 758, 878, 1020, 1036, 1135
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 814, 1132
HpyF3I CTNAG 9 cut(s) 155, 355, 684, 714, 813, 918, 1068, 1200, 1260
HpySE526I ACGT 2 cut(s) 312, 803
Hsp92II CATG 9 cut(s) 13, 238, 424, 487, 581, 778, 822, 1052, 1087
HspAI GCGC 3 cut(s) 592, 626, 1065
Kpn2I TCCGGA 1 cut(s) 740
KpnI GGTACC 1 cut(s) 222
Kzo9I GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 770, 1119
LweI GCATC 5 cut(s) 283, 305, 538, 964, 1023
MaeI CTAG 3 cut(s) 108, 321, 723
MaeII ACGT 2 cut(s) 312, 803
MaeIII GTNAC 5 cut(s) 160, 313, 401, 729, 830
MalI GATC 9 cut(s) 75, 125, 153, 200, 346, 462, 764, 933, 1000
MbiI CCGCTC 1 cut(s) 439
MboI GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
MboII GAAGA 6 cut(s) 120, 250, 524, 811, 1124, 1216
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 2 cut(s) 123, 344
MluCI AATT 5 cut(s) 372, 753, 789, 873, 983
MlyI GAGTC 2 cut(s) 33, 685
MmeI TCCRAC 2 cut(s) 94, 592
Mph1103I ATGCAT 1 cut(s) 298
MroI TCCGGA 1 cut(s) 740
MroXI GAANNNNTTC 3 cut(s) 29, 987, 1079
MseI TTAA 3 cut(s) 120, 654, 1164
MslI CAYNNNNRTG 3 cut(s) 233, 1025, 1041
MspA1I CMGCKG 3 cut(s) 65, 608, 980
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 6 cut(s) 88, 215, 342, 741, 1023, 1236
MspR9I CCNGG 3 cut(s) 216, 843, 1237
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 1126
MvaI CCWGG 1 cut(s) 843
MwoI GCNNNNNNNGC 3 cut(s) 272, 814, 1132
NciI CCSGG 2 cut(s) 216, 1237
NdeII GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
NlaIII CATG 9 cut(s) 13, 238, 424, 487, 581, 778, 822, 1052, 1087
NlaIV GGNNCC 6 cut(s) 147, 210, 220, 265, 346, 604
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 4 cut(s) 160, 313, 401, 729
NsiI ATGCAT 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 1025
PagI TCATGA 3 cut(s) 234, 774, 1083
PciSI GCTCTTC 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PctI GAATGC 1 cut(s) 1126
PdmI GAANNNNTTC 3 cut(s) 29, 987, 1079
PfeI GAWTC 3 cut(s) 25, 140, 466
PinAI ACCGGT 1 cut(s) 1022
PkrI GCNGC 5 cut(s) 136, 607, 760, 979, 1134
PleI GAGTC 2 cut(s) 33, 685
PpsI GAGTC 2 cut(s) 33, 685
PshBI ATTAAT 1 cut(s) 654
PsiI TTATAA 1 cut(s) 858
Psp6I CCWGG 1 cut(s) 841
PspGI CCWGG 1 cut(s) 841
PspN4I GGNNCC 6 cut(s) 147, 210, 220, 265, 346, 604
PspPI GGNCC 3 cut(s) 209, 264, 1233
PstI CTGCAG 1 cut(s) 1137
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 2 cut(s) 123, 344
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 3 cut(s) 220, 1011, 1139
RsaNI GTAC 3 cut(s) 219, 1010, 1138
RseI CAYNNNNRTG 3 cut(s) 233, 1025, 1041
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 3 cut(s) 120, 654, 1164
SatI GCNGC 5 cut(s) 135, 606, 759, 978, 1133
Sau3AI GATC 9 cut(s) 73, 123, 151, 198, 344, 460, 762, 931, 998
Sau96I GGNCC 3 cut(s) 209, 264, 1233
ScaI AGTACT 1 cut(s) 1139
SchI GAGTC 2 cut(s) 33, 685
ScrFI CCNGG 3 cut(s) 216, 843, 1237
SfaNI GCATC 5 cut(s) 283, 305, 538, 964, 1023
SfcI CTRYAG 2 cut(s) 666, 1133
SgrAI CRCCGGYG 1 cut(s) 1022
SinI GGWCC 2 cut(s) 209, 1233
SmiMI CAYNNNNRTG 3 cut(s) 233, 1025, 1041
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 5 cut(s) 372, 753, 789, 873, 983
SsiI CCGC 7 cut(s) 101, 132, 135, 439, 606, 645, 978
SspI AATATT 1 cut(s) 700
SspMI CTAG 3 cut(s) 108, 321, 723
StyD4I CCNGG 3 cut(s) 214, 841, 1235
StyI CCWWGG 1 cut(s) 994
TaaI ACNGT 6 cut(s) 166, 232, 283, 527, 670, 1009
TaiI ACGT 2 cut(s) 315, 806
TaqI TCGA 3 cut(s) 72, 522, 633
TasI AATT 5 cut(s) 372, 753, 789, 873, 983
TatI WGTACW 2 cut(s) 1009, 1137
TauI GCSGC 3 cut(s) 137, 608, 980
TfiI GAWTC 3 cut(s) 25, 140, 466
Tru1I TTAA 3 cut(s) 120, 654, 1164
Tru9I TTAA 3 cut(s) 120, 654, 1164
TscAI CASTG 4 cut(s) 163, 169, 406, 885
TseFI GTSAC 4 cut(s) 160, 313, 401, 729
TseI GCWGC 2 cut(s) 758, 1132
Tsp45I GTSAC 4 cut(s) 160, 313, 401, 729
TspDTI ATGAA 8 cut(s) 251, 267, 812, 908, 926, 976, 1072, 1100
TspRI CASTG 4 cut(s) 163, 169, 406, 885
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 209, 1233
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 1 cut(s) 983
XmnI GAANNNNTTC 3 cut(s) 29, 987, 1079
XspI CTAG 3 cut(s) 108, 321, 723
ZrmI AGTACT 1 cut(s) 1139
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.