Prupe.5G236800_v2.0.a1

dihydropyrimidine dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
17905275 .. 17908345
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G236800.3

Sequence Viewer

Length: 1278 bp
ATGGCGTCTCTCAGTTTTACTCAGATCAGAGGCAAGAACCCAGTTGCTGAATTTTCCAGGACACGTCCTGAGTTGGGTTTGACTCGGCCTAGCAGAGTTGGGTTTAGGGTGTTTGCCTCTGAGTCTGAGGCCAAGGCAGAGCCTGATCTTAGTGTTACTGTCAATGGTTTGCACATGCCCAATCCCTTTGTTATTGGCTCCGGTCCACCCGGTACCAACTATACGGTCATGAAGAGGGCGTTTGATGAAGGGTGGGGTGCTGTGATTGCCAAAACTGTGTCACTGGACGCAGCAAAGGTAAAAAATGTCACTCCTCGATATGCTAGGCTACGAGCAGATGCAAATGGCTCACCCAAAGGGCAAATTATTGGGTGGGAGAACATAGAACTGATAAGTGATCGACCTCTTGAAATCATGTTGAAAGAATTCAAGCAATTAAAACAAGAGTATCCAGACAGGATTCTGATTGCTTCAATTATGGAGGAATATAACAAAGCTGGCTGGGAGGAACTTATTGACCGTGTCGAGCAAACTGGAGTTGATGCCTTTGAAATCAATTTCTCCTGTCCTCATGGTATGCCAGAGCGCAAGATGGGTGCTGCAGTTGGCCAAGACTGCGCACTTTTGGAAGAAGTCTGTGGATGGATTAATGCCAAAGCTACAATTCCTGTTTGGGCTAAGATGACTCCTAACGTCACTGACATCACACAGCCCGCTAGAGTGGCTCTGAGCTCAGGATGTGAGGGGGTTGCCGCTATTAACACAATCATGAGTGTAATGGGGATCAATCTAACTACCTTACGGCCTGAACCTTGTGTGGAGGGATACTCAACTCCTGGAGGCTATTCTTCTAAGGCAGTTCATCCTATTGCACTTGCAAAAGTAATGAATATTGCAAAAATGATGAAATCAGAGTTTGGTGATAAGGATTACTCACTTTCTGGTATTGGGGGTGTTGAGTCCGGTGGTGATGCTGCTGAATTTATTCTGCTTGGAGCAAATACTGTTCAGGTCTGCACTGGGGTCATGATGCATGGATATGGTATTGTGAAAAAACTCTGTTCTGAGCTTCAGGATTTTATGAAACTACACAATTTCTCATCTATAGAAGATTTCAGGGGGGTTTCCCTTGAATATTTTACAACACATACTGATTTAGTACGAAGGCAACAAGAAGCAATACAACAGAGGAAAGCTGTCCGGAAAGGTTTGCAATCGGACAAGGAGTGGACAGGAGACGGCTTCGTCAAAGAGACTGAAAGCATGGTTTCCAACTAA

Protein Analysis

426

Amino Acids

46.53

Weight (kDa)

5.99

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1244
Acc16I TGCGCA 1 cut(s) 619
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 1200
AciI CCGC 2 cut(s) 714, 753
AclWI GGATC 1 cut(s) 791
AcoI YGGCCR 1 cut(s) 607
AcsI RAATTY 3 cut(s) 50, 425, 980
AcuI CTGAAG 1 cut(s) 1055
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 214, 1161
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 6 cut(s) 410, 421, 430, 474, 551, 1133
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 2 cut(s) 56, 835
AluBI AGCT 5 cut(s) 497, 659, 732, 1069, 1196
AluI AGCT 5 cut(s) 497, 659, 732, 1069, 1196
Alw21I GWGCWC 1 cut(s) 734
Alw26I GTCTC 3 cut(s) 12, 1230, 1247
AlwI GGATC 1 cut(s) 791
AlwNI CAGNNNCTG 2 cut(s) 47, 143
Aor13HI TCCGGA 1 cut(s) 1200
AoxI GGCC 4 cut(s) 86, 129, 607, 803
ApeKI GCWGC 3 cut(s) 290, 599, 974
ApoI RAATTY 3 cut(s) 50, 425, 980
AseI ATTAAT 1 cut(s) 648
Asp700I GAANNNNTTC 2 cut(s) 425, 984
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 588, 620
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 342, 932, 980
AvaII GGWCC 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BalI TGGCCA 1 cut(s) 609
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 734
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 3 cut(s) 302, 586, 961
BccI CCATC 2 cut(s) 586, 636
BceAI ACGGC 2 cut(s) 818, 1255
BciT130I CCWGG 2 cut(s) 58, 837
BciVI GTATCC 2 cut(s) 459, 818
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 12, 1230, 1247
BfaI CTAG 3 cut(s) 90, 324, 717
BfmI CTRYAG 2 cut(s) 600, 1104
BfuI GTATCC 2 cut(s) 459, 818
BisI GCNGC 4 cut(s) 291, 600, 753, 975
BlsI GCNGC 4 cut(s) 292, 601, 754, 976
Bme1390I CCNGG 3 cut(s) 58, 210, 837
Bme18I GGWCC 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 199, 214
BmrFI CCNGG 3 cut(s) 58, 210, 837
BmrI ACTGGG 2 cut(s) 35, 1029
BmsI GCATC 4 cut(s) 328, 532, 961, 1020
BmuI ACTGGG 2 cut(s) 35, 1029
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 2 cut(s) 555, 858
Bpu10I CCTNAGC 1 cut(s) 733
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 3 cut(s) 200, 962, 1200
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 41, 288, 538, 1024
BseAI TCCGGA 1 cut(s) 1200
BseBI CCWGG 2 cut(s) 58, 837
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 3 cut(s) 647, 743, 862
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 8 cut(s) 25, 35, 60, 111, 117, 719, 747, 1056
BseNI ACTGG 4 cut(s) 41, 288, 538, 1024
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 3 cut(s) 302, 586, 961
BseYI CCCAGC 1 cut(s) 501
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 4 cut(s) 88, 131, 609, 805
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 734
BsiSI CCGG 4 cut(s) 201, 210, 963, 1201
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 12, 1230, 1247
BsmBI CGTCTC 2 cut(s) 12, 1230
BsnI GGCC 4 cut(s) 88, 131, 609, 805
Bsp1286I GDGCHC 1 cut(s) 734
Bsp13I TCCGGA 1 cut(s) 1200
Bsp143I GATC 4 cut(s) 24, 145, 397, 783
BspACI CCGC 2 cut(s) 714, 753
BspANI GGCC 4 cut(s) 88, 131, 609, 805
BspCNI CTCAG 8 cut(s) 24, 34, 61, 112, 118, 720, 746, 1057
BspEI TCCGGA 1 cut(s) 1200
BspHI TCATGA 3 cut(s) 228, 768, 1026
BspLI GGNNCC 2 cut(s) 199, 214
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 212
BsrI ACTGG 4 cut(s) 41, 288, 538, 1024
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 4 cut(s) 24, 145, 397, 783
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 58, 837
Bst4CI ACNGT 5 cut(s) 160, 226, 277, 521, 1006
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 499, 714
BstF5I GGATG 3 cut(s) 647, 743, 862
BstHHI GCGC 2 cut(s) 588, 620
BstKTI GATC 4 cut(s) 27, 148, 400, 786
BstMAI GTCTC 3 cut(s) 12, 1230, 1247
BstMBI GATC 4 cut(s) 24, 145, 397, 783
BstMWI GCNNNNNNNGC 3 cut(s) 266, 615, 722
BstNI CCWGG 2 cut(s) 58, 837
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 56, 208, 835
BstSFI CTRYAG 2 cut(s) 600, 1104
BstV1I GCAGC 3 cut(s) 302, 586, 961
BsuI GTATCC 2 cut(s) 459, 818
BsuRI GGCC 4 cut(s) 88, 131, 609, 805
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 3 cut(s) 647, 743, 862
BtsIMutI CAGTG 3 cut(s) 281, 696, 1017
Cac8I GCNNGC 2 cut(s) 499, 714
CaiI CAGNNNCTG 2 cut(s) 47, 143
CciI TCATGA 3 cut(s) 228, 768, 1026
CfoI GCGC 2 cut(s) 588, 620
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 213, 1160
CviAII CATG 8 cut(s) 175, 229, 415, 572, 769, 1027, 1034, 1264
CviQI GTAC 2 cut(s) 213, 1160
DpnI GATC 4 cut(s) 26, 147, 399, 785
DpnII GATC 4 cut(s) 24, 145, 397, 783
DrdI GACNNNNNNGTC 1 cut(s) 1244
DseDI GACNNNNNNGTC 1 cut(s) 1244
EaeI YGGCCR 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 732
Eco57I CTGAAG 1 cut(s) 1055
EcoICRI GAGCTC 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 2 cut(s) 56, 835
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 1035
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 2 cut(s) 12, 1230
FaeI CATG 8 cut(s) 178, 232, 418, 575, 772, 1030, 1037, 1267
FatI CATG 8 cut(s) 174, 228, 414, 571, 768, 1026, 1033, 1263
FauI CCCGC 1 cut(s) 721
Fnu4HI GCNGC 4 cut(s) 291, 600, 753, 975
FokI GGATG 3 cut(s) 654, 750, 849
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 4 cut(s) 291, 600, 753, 975
FspBI CTAG 3 cut(s) 90, 324, 717
FspI TGCGCA 1 cut(s) 619
GlaI GCGC 2 cut(s) 587, 619
GluI GCNGC 4 cut(s) 291, 600, 753, 975
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 2 cut(s) 555, 858
HaeIII GGCC 4 cut(s) 88, 131, 609, 805
HapII CCGG 4 cut(s) 201, 210, 963, 1201
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 588, 620
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 178, 232, 418, 575, 772, 1030, 1037, 1267
Hin6I GCGC 2 cut(s) 586, 618
HinP1I GCGC 2 cut(s) 586, 618
HinfI GANTC 5 cut(s) 82, 122, 460, 685, 959
HpaII CCGG 4 cut(s) 201, 210, 963, 1201
HphI GGTGA 3 cut(s) 342, 932, 980
Hpy166II GTNNAC 2 cut(s) 206, 1230
Hpy188I TCNGA 9 cut(s) 24, 29, 121, 127, 465, 729, 913, 1066, 1219
Hpy188III TCNNGA 9 cut(s) 68, 229, 407, 452, 735, 769, 1027, 1073, 1201
Hpy8I GTNNAC 2 cut(s) 206, 1230
HpyAV CCTTC 2 cut(s) 242, 1158
HpyCH4III ACNGT 5 cut(s) 160, 226, 277, 521, 1006
HpyCH4IV ACGT 2 cut(s) 64, 693
HpyCH4V TGCA 9 cut(s) 172, 341, 602, 872, 878, 896, 1017, 1033, 1213
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 615, 722
HpySE526I ACGT 2 cut(s) 64, 693
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 178, 232, 418, 575, 772, 1030, 1037, 1267
HspAI GCGC 2 cut(s) 586, 618
Kpn2I TCCGGA 1 cut(s) 1200
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 4 cut(s) 24, 145, 397, 783
LmnI GCTCC 2 cut(s) 203, 995
Lsp1109I GCAGC 3 cut(s) 302, 586, 961
LweI GCATC 4 cut(s) 328, 532, 961, 1020
MaeI CTAG 3 cut(s) 90, 324, 717
MaeII ACGT 2 cut(s) 64, 693
MaeIII GTNAC 4 cut(s) 154, 279, 307, 694
MalI GATC 4 cut(s) 26, 147, 399, 785
MboI GATC 4 cut(s) 24, 145, 397, 783
MboII GAAGA 4 cut(s) 244, 641, 840, 1121
MhlI GDGCHC 1 cut(s) 734
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 9 cut(s) 50, 363, 425, 434, 474, 556, 663, 980, 1093
MluNI TGGCCA 1 cut(s) 609
MlyI GAGTC 4 cut(s) 76, 131, 679, 968
Mox20I TGGCCA 1 cut(s) 609
Mph1103I ATGCAT 1 cut(s) 1035
MroI TCCGGA 1 cut(s) 1200
MroXI GAANNNNTTC 2 cut(s) 425, 984
MscI TGGCCA 1 cut(s) 609
MseI TTAA 3 cut(s) 437, 648, 759
MslI CAYNNNNRTG 2 cut(s) 767, 1038
Msp20I TGGCCA 1 cut(s) 609
MspI CCGG 4 cut(s) 201, 210, 963, 1201
MspR9I CCNGG 3 cut(s) 58, 210, 837
MvaI CCWGG 2 cut(s) 58, 837
MwoI GCNNNNNNNGC 3 cut(s) 266, 615, 722
NciI CCSGG 1 cut(s) 210
NdeII GATC 4 cut(s) 24, 145, 397, 783
NlaIII CATG 8 cut(s) 178, 232, 418, 575, 772, 1030, 1037, 1267
NlaIV GGNNCC 2 cut(s) 199, 214
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 3 cut(s) 279, 307, 694
NsbI TGCGCA 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 1035
NspI RCATGY 1 cut(s) 178
PagI TCATGA 3 cut(s) 228, 768, 1026
PdmI GAANNNNTTC 2 cut(s) 425, 984
PfeI GAWTC 1 cut(s) 460
PflFI GACNNNGTC 1 cut(s) 521
PfoI TCCNGGA 2 cut(s) 56, 835
PkrI GCNGC 4 cut(s) 292, 601, 754, 976
PleI GAGTC 4 cut(s) 76, 130, 679, 967
PpsI GAGTC 4 cut(s) 76, 130, 679, 967
PshBI ATTAAT 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 734
Psp6I CCWGG 2 cut(s) 56, 835
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 2 cut(s) 56, 835
PspN4I GGNNCC 2 cut(s) 199, 214
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 604
PstNI CAGNNNCTG 2 cut(s) 47, 143
PsyI GACNNNGTC 1 cut(s) 521
RsaI GTAC 2 cut(s) 214, 1161
RsaNI GTAC 2 cut(s) 213, 1160
RseI CAYNNNNRTG 2 cut(s) 767, 1038
SacI GAGCTC 1 cut(s) 734
SaqAI TTAA 3 cut(s) 437, 648, 759
SatI GCNGC 4 cut(s) 291, 600, 753, 975
Sau3AI GATC 4 cut(s) 24, 145, 397, 783
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 4 cut(s) 76, 131, 679, 968
ScrFI CCNGG 3 cut(s) 58, 210, 837
SduI GDGCHC 1 cut(s) 734
SfaNI GCATC 4 cut(s) 328, 532, 961, 1020
SfcI CTRYAG 2 cut(s) 600, 1104
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 767, 1038
Sse9I AATT 9 cut(s) 50, 363, 425, 434, 474, 556, 663, 980, 1093
SsiI CCGC 2 cut(s) 714, 753
SspI AATATT 2 cut(s) 892, 1136
SspMI CTAG 3 cut(s) 90, 324, 717
SstI GAGCTC 1 cut(s) 734
StyD4I CCNGG 3 cut(s) 56, 208, 835
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 5 cut(s) 160, 226, 277, 521, 1006
TaiI ACGT 2 cut(s) 67, 696
TaqI TCGA 3 cut(s) 316, 400, 525
TasI AATT 9 cut(s) 50, 363, 425, 434, 474, 556, 663, 980, 1093
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 3 cut(s) 437, 648, 759
Tru9I TTAA 3 cut(s) 437, 648, 759
TscAI CASTG 3 cut(s) 288, 703, 1024
TseFI GTSAC 3 cut(s) 279, 307, 694
TseI GCWGC 3 cut(s) 290, 599, 974
Tsp45I GTSAC 3 cut(s) 279, 307, 694
TspDTI ATGAA 6 cut(s) 245, 261, 851, 902, 920, 1097
TspRI CASTG 3 cut(s) 288, 703, 1024
Tth111I GACNNNGTC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 3 cut(s) 50, 425, 980
XceI RCATGY 1 cut(s) 178
XmnI GAANNNNTTC 2 cut(s) 425, 984
XspI CTAG 3 cut(s) 90, 324, 717
Zsp2I ATGCAT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.