Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009510

Physical Location & Seq

Genomic Coordinates Reverse (-)

23587139 .. 23590202

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20670.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGTCTTTCAGCTTTACGCAGATCAAAGGCAACACCCCAGTTGCTGAGTTTTCCAGAAGGACTCGTCCTGAGCTGGGTTCGATTCGGCCTAGCAGAGTTGGGTTCAGGGTGTTGGCCTCCGAGAGCAAGGCGGAGCCTGATCTTAGTGTTACTGTTAATGGGTTGCACATGCCCAACCCGTTCGTTATCGGGTCGGGTCCGCCAGGGACTAACTATACGGTGATGAAGAGGGCCTTTGATGAAGGCTGGGGTGCTGTGATTGCCAAAACTGTATCACTAGATGCAGAAAAAGTAAAAAATGTCACTCCTCGATATGCTCAGCTACGAGTAGATGGAAATGGCTCTGCCAAAGGGCAAATTATTGGGTGGCAGAACATAGAACTGATCAGTGATCGACCTCTTGAAATTATGTTGAAAGAATTTAAGCAACTAAAAGAAGAGTATCCAGATAGGATTCTGATTGCTTCAATTATGGAGGAATACAGCAAAGCTGGCTGGGAGGAACTTATTGACCGTGTTGAGCAAACTGGAGTTGATGCCCTTGAAATCAATTTTTCTTGTCCTCATGGTATGCCAGAGCGCAGGATGGGTGCTGCGGTTGGTCAAGACTGTGCACTTCTGGAAGAAGTATCTGGCTGGATCAATGCCAAAGCCACAGTTCCTGTTTGGGCAAAGATGACTCCTAACATTACTGACATCACACAGCCAGCTAGAGTGGCTCTGAGCTCAGGATGTGAGGGCGTGGCGGCTATTAATACCATCATGAGTGTAATGGGGATCAATCTAACTACCTTACGGCCTGAGCCTTGTGTGGAGGGATACTCAACTCCTGGGGGCTATTCGGCTAAAGCAGTTCATCCGATTGCATTGGCAAAAGTGATGAACATAGCAAAATTAATGAAATCAGAGTTTGGTGATACGGATTACTCGCTTTCTGGTATTGGGGGTGTTGAGTCAGGTGGCGATGCTGCTGAGTTCATTCTTCTTGGAGCAAATACTGTTCAGGTCTGCACCGGGGTCATGATGCACGGATATGGTGTTGTGAAGAAACTTTGTTCCGAGCTGAAGGATTTTATGAAACAGCACAATTTCTCATCCATTGAAGATTTCAGGGGGGCTTCCCTCGAATACTTTACAACACATACAGATTTAGTAACAAGACAACAGGAAGCAATCAAACAGAGGAAAGCCATCCGGAAAGGATTGCAATCTGATAAAGACTGGACAGGAGACGGTTTCGTGAAAGAGACCGAGAGCATGGTTTCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016627 GO:0016628 GO:0016651 GO:0017113 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0051716 GO:0055086 GO:0055114 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

425

Amino Acids

46.24

Weight (kDa)

5.84

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17810
fragaria_vesca	FvH4_5g17680 FvH4_5g17680
malus_domestica	MD06G1232500.v1.1 MD14G1239300.v1.1
prunus_persica	Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1
pyrus_communis	pycom06g20670
rosa_chinensis	RchiOBHm_Chr7g0177971
rosa_laevigata	RLG00000005486
rosa_multiflora	Rmu_co8250821.1_g000001 Rmu_sc0022313.1_g000001 Rmu_sc0034489.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275350
rosa_rugosa	Rorug06G0411900 Rorug06G0411900
rosa_samantha	Rh7AG010900 Rh7BG010800 Rh7CG011200 Rh7DG010900
rosa_wichuraiana	Rw7G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1197
AciI	CCGC	4 cut(s)	134, 203, 599, 749
AclWI	GGATC	2 cut(s)	650, 788
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	1088
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	5 cut(s)	407, 418, 471, 548, 1106
AjnI	CCWGG	2 cut(s)	205, 832
AluBI	AGCT	7 cut(s)	15, 76, 325, 494, 713, 729, 1066
AluI	AGCT	7 cut(s)	15, 76, 325, 494, 713, 729, 1066
Alw21I	GWGCWC	2 cut(s)	619, 731
Alw26I	GTCTC	2 cut(s)	1227, 1244
Alw44I	GTGCAC	1 cut(s)	615
AlwI	GGATC	2 cut(s)	650, 788
AlwNI	CAGNNNCTG	2 cut(s)	47, 665
Aor13HI	TCCGGA	1 cut(s)	1197
AoxI	GGCC	4 cut(s)	89, 117, 234, 800
ApaLI	GTGCAC	1 cut(s)	615
ApeKI	GCWGC	2 cut(s)	596, 971
ApoI	RAATTY	1 cut(s)	422
AseI	ATTAAT	2 cut(s)	756, 899
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	200, 234
AsuC2I	CCSGG	1 cut(s)	1018
AsuHPI	GGTGA	2 cut(s)	235, 929
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	731
Bbv12I	GWGCWC	2 cut(s)	619, 731
BbvI	GCAGC	2 cut(s)	583, 958
BccI	CCATC	4 cut(s)	329, 583, 770, 1202
BceAI	ACGGC	1 cut(s)	815
BciT130I	CCWGG	2 cut(s)	207, 834
BciVI	GTATCC	2 cut(s)	456, 815
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	1018
BcoDI	GTCTC	2 cut(s)	1227, 1244
BfaI	CTAG	3 cut(s)	93, 281, 714
BfuI	GTATCC	2 cut(s)	456, 815
BisI	GCNGC	3 cut(s)	597, 750, 972
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	598, 751, 973
Bme1390I	CCNGG	3 cut(s)	207, 834, 1018
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	200, 234
BmiI	GGNNCC	2 cut(s)	138, 201
BmrFI	CCNGG	3 cut(s)	207, 834, 1018
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	4 cut(s)	274, 529, 958, 1017
BmuI	ACTGGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	3 cut(s)	72, 730, 804
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	1018
BsaBI	GATNNNNATC	1 cut(s)	1210
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1244
BsaJI	CCNNGG	3 cut(s)	206, 833, 1017
BsaWI	WCCGGW	1 cut(s)	1197
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	41, 535, 1229
Bse8I	GATNNNNATC	1 cut(s)	1210
BseAI	TCCGGA	1 cut(s)	1197
BseBI	CCWGG	2 cut(s)	207, 834
BseDI	CCNNGG	3 cut(s)	206, 833, 1017
BseGI	GGATG	5 cut(s)	594, 740, 859, 1097, 1194
BseJI	GATNNNNATC	1 cut(s)	1210
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	7 cut(s)	39, 63, 335, 716, 744, 795, 966
BseNI	ACTGG	3 cut(s)	41, 535, 1229
BseRI	GAGGAG	1 cut(s)	300
BseSI	GKGCMC	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	583, 958
BseYI	CCCAGC	3 cut(s)	76, 249, 498
BsgI	GTGCAG	1 cut(s)	997
BshFI	GGCC	4 cut(s)	91, 119, 236, 802
BsiHKAI	GWGCWC	2 cut(s)	619, 731
BsiSI	CCGG	2 cut(s)	1017, 1198
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	1227, 1244
BsmBI	CGTCTC	1 cut(s)	1227
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	91, 119, 236, 802
Bso31I	GGTCTC	1 cut(s)	1244
Bsp1286I	GDGCHC	2 cut(s)	619, 731
Bsp13I	TCCGGA	1 cut(s)	1197
Bsp143I	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	4 cut(s)	134, 203, 599, 749
BspANI	GGCC	4 cut(s)	91, 119, 236, 802
BspCNI	CTCAG	7 cut(s)	40, 64, 334, 717, 743, 796, 967
BspEI	TCCGGA	1 cut(s)	1197
BspHI	TCATGA	2 cut(s)	765, 1023
BspLI	GGNNCC	2 cut(s)	138, 201
BspPI	GGATC	2 cut(s)	650, 788
BspTNI	GGTCTC	1 cut(s)	1244
BsrI	ACTGG	3 cut(s)	41, 535, 1229
BssECI	CCNNGG	3 cut(s)	206, 833, 1017
BssMI	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	207, 834
Bst4CI	ACNGT	8 cut(s)	157, 223, 274, 518, 614, 661, 1003, 1238
Bst6I	CTCTTC	2 cut(s)	224, 435
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	496, 711
BstDEI	CTNAG	8 cut(s)	48, 72, 146, 321, 725, 730, 804, 975
BstF5I	GGATG	5 cut(s)	594, 740, 859, 1097, 1194
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	6 cut(s)	27, 145, 390, 397, 645, 783
BstMAI	GTCTC	2 cut(s)	1227, 1244
BstMBI	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 495, 719
BstNI	CCWGG	2 cut(s)	207, 834
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	3 cut(s)	205, 832, 1016
BstSLI	GKGCMC	1 cut(s)	619
BstV1I	GCAGC	2 cut(s)	583, 958
BsuI	GTATCC	2 cut(s)	456, 815
BsuRI	GGCC	4 cut(s)	91, 119, 236, 802
BtgZI	GCGATG	1 cut(s)	981
BtsCI	GGATG	5 cut(s)	594, 740, 859, 1097, 1194
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	496, 711
CaiI	CAGNNNCTG	2 cut(s)	47, 665
CciI	TCATGA	2 cut(s)	765, 1023
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	200, 234
CviAII	CATG	5 cut(s)	172, 569, 766, 1024, 1261
DdeI	CTNAG	8 cut(s)	48, 72, 146, 321, 725, 730, 804, 975
DpnI	GATC	6 cut(s)	26, 144, 389, 396, 644, 782
DpnII	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
Eam1104I	CTCTTC	2 cut(s)	224, 435
EarI	CTCTTC	2 cut(s)	224, 435
EciI	GGCGGA	2 cut(s)	149, 192
Ecl136II	GAGCTC	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	1244
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	1088
EcoICRI	GAGCTC	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	205, 832
EcoT38I	GRGCYC	1 cut(s)	731
Esp3I	CGTCTC	1 cut(s)	1227
FaeI	CATG	5 cut(s)	175, 572, 769, 1027, 1264
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	5 cut(s)	171, 568, 765, 1023, 1260
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	597, 750, 972
FokI	GGATG	5 cut(s)	601, 747, 846, 1084, 1181
FriOI	GRGCYC	1 cut(s)	731
Fsp4HI	GCNGC	3 cut(s)	597, 750, 972
FspBI	CTAG	3 cut(s)	93, 281, 714
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	3 cut(s)	597, 750, 972
GsaI	CCCAGC	3 cut(s)	80, 253, 502
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	4 cut(s)	91, 119, 236, 802
HapII	CCGG	2 cut(s)	1017, 1198
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	175, 572, 769, 1027, 1264
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	5 cut(s)	64, 85, 457, 682, 956
HpaII	CCGG	2 cut(s)	1017, 1198
HphI	GGTGA	2 cut(s)	235, 929
Hpy166II	GTNNAC	1 cut(s)	617
Hpy188I	TCNGA	7 cut(s)	124, 462, 726, 864, 910, 1063, 1216
Hpy8I	GTNNAC	1 cut(s)	617
HpyAV	CCTTC	3 cut(s)	54, 239, 1063
HpyCH4III	ACNGT	8 cut(s)	157, 223, 274, 518, 614, 661, 1003, 1238
HpyCH4V	TGCA	7 cut(s)	169, 287, 617, 869, 1014, 1030, 1210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 495, 719
HpyF3I	CTNAG	8 cut(s)	48, 72, 146, 321, 725, 730, 804, 975
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	175, 572, 769, 1027, 1264
HspAI	GCGC	1 cut(s)	583
Kpn2I	TCCGGA	1 cut(s)	1197
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
LmnI	GCTCC	2 cut(s)	136, 992
Lsp1109I	GCAGC	2 cut(s)	583, 958
LweI	GCATC	4 cut(s)	274, 529, 958, 1017
MaeI	CTAG	3 cut(s)	93, 281, 714
MaeIII	GTNAC	3 cut(s)	151, 304, 1156
MalI	GATC	6 cut(s)	26, 144, 389, 396, 644, 782
MboI	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
MboII	GAAGA	6 cut(s)	241, 452, 638, 977, 1060, 1118
MhlI	GDGCHC	2 cut(s)	619, 731
MluCI	AATT	7 cut(s)	360, 408, 422, 471, 553, 896, 1090
MlyI	GAGTC	3 cut(s)	58, 676, 965
MroI	TCCGGA	1 cut(s)	1197
MseI	TTAA	4 cut(s)	159, 426, 756, 899
MslI	CAYNNNNRTG	1 cut(s)	1035
MspI	CCGG	2 cut(s)	1017, 1198
MspR9I	CCNGG	3 cut(s)	207, 834, 1018
MvaI	CCWGG	2 cut(s)	207, 834
MwoI	GCNNNNNNNGC	3 cut(s)	263, 495, 719
NciI	CCSGG	1 cut(s)	1018
NdeII	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
NlaIII	CATG	5 cut(s)	175, 572, 769, 1027, 1264
NlaIV	GGNNCC	2 cut(s)	138, 201
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	175
PagI	TCATGA	2 cut(s)	765, 1023
PfeI	GAWTC	2 cut(s)	85, 457
PkrI	GCNGC	3 cut(s)	598, 751, 973
PleI	GAGTC	3 cut(s)	58, 676, 964
PpsI	GAGTC	3 cut(s)	58, 676, 964
PshBI	ATTAAT	2 cut(s)	756, 899
Psp124BI	GAGCTC	1 cut(s)	731
Psp6I	CCWGG	2 cut(s)	205, 832
PspFI	CCCAGC	3 cut(s)	76, 249, 498
PspGI	CCWGG	2 cut(s)	205, 832
PspN4I	GGNNCC	2 cut(s)	138, 201
PspPI	GGNCC	2 cut(s)	200, 234
PstNI	CAGNNNCTG	2 cut(s)	47, 665
RseI	CAYNNNNRTG	1 cut(s)	1035
SacI	GAGCTC	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	159, 426, 756, 899
SatI	GCNGC	3 cut(s)	597, 750, 972
Sau3AI	GATC	6 cut(s)	24, 142, 387, 394, 642, 780
Sau96I	GGNCC	2 cut(s)	200, 234
SchI	GAGTC	3 cut(s)	58, 676, 965
ScrFI	CCNGG	3 cut(s)	207, 834, 1018
SduI	GDGCHC	2 cut(s)	619, 731
SfaNI	GCATC	4 cut(s)	274, 529, 958, 1017
SinI	GGWCC	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	1035
Sse9I	AATT	7 cut(s)	360, 408, 422, 471, 553, 896, 1090
SsiI	CCGC	4 cut(s)	134, 203, 599, 749
SspMI	CTAG	3 cut(s)	93, 281, 714
SstI	GAGCTC	1 cut(s)	731
StyD4I	CCNGG	3 cut(s)	205, 832, 1016
TaaI	ACNGT	8 cut(s)	157, 223, 274, 518, 614, 661, 1003, 1238
TaqI	TCGA	4 cut(s)	83, 313, 397, 1128
TaqII	GACCGA	1 cut(s)	1268
TasI	AATT	7 cut(s)	360, 408, 422, 471, 553, 896, 1090
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	2 cut(s)	85, 457
Tru1I	TTAA	4 cut(s)	159, 426, 756, 899
Tru9I	TTAA	4 cut(s)	159, 426, 756, 899
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	596, 971
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	7 cut(s)	242, 258, 848, 899, 917, 970, 1094
TspGWI	ACGGA	2 cut(s)	938, 1047
TspRI	CASTG	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	200
VspI	ATTAAT	2 cut(s)	756, 899
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	3 cut(s)	93, 281, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.