Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034489.1

Orthogroup ID

OG0009510

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1534

Gene Structure 1533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 688 bp

atgcccaaccctttcgttatcgggtcgggtccacccggtactaactacaccgtcatgaaaagggcctttgatgaaggctggggtgctgtgattgccaaaactgtgtcgctagacgcagcaaaagtgaagaatgtcactccacgatatgcaaagctacgagctgatgcaaatggctcagccaaagggcagattattgggtgggagaatatagaacttataagtgatcgacctcttgaaactatgttgaaagaattcaagcaattgaaggaagagtatccggacaggattctgattgcttcaatcatggaggaatataacaaagctggctgggaggaactaattgatcgtgtggagcaaactggagttgatgcctttgaaatcaacttctcctgtcctcatggtatgccggagcgcaagatgggtgctgctgttgggcaagactgtgtactgttggaagaagtctgtggatggatcaatgccaaagctacaattccggtttgggcaaagatgactcctaacgtcactgacattacacagccagctagagtggctcttagctcaggatgtgagggagtatcagctattaacacgatcatgagtgtaatgggaataaatctgattaccttacggcctgagccttgtgtggagggatactcgactcctgggggctattcttccaaggcagttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016627 GO:0016628 GO:0016651 GO:0017113 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0051716 GO:0055086 GO:0055114 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

229

Amino Acids

24.91

Weight (kDa)

5.11

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17810
fragaria_vesca	FvH4_5g17680 FvH4_5g17680
malus_domestica	MD06G1232500.v1.1 MD14G1239300.v1.1
prunus_persica	Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1
pyrus_communis	pycom06g20670
rosa_chinensis	RchiOBHm_Chr7g0177971
rosa_laevigata	RLG00000005486
rosa_multiflora	Rmu_co8250821.1_g000001 Rmu_sc0022313.1_g000001 Rmu_sc0034489.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275350
rosa_rugosa	Rorug06G0411900 Rorug06G0411900
rosa_samantha	Rh7AG010900 Rh7BG010800 Rh7CG011200 Rh7DG010900
rosa_wichuraiana	Rw7G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	277
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	2 cut(s)	40, 447
AgsI	TTSAA	6 cut(s)	236, 247, 256, 265, 300, 377
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	7 cut(s)	154, 161, 323, 485, 542, 558, 581
AluI	AGCT	7 cut(s)	154, 161, 323, 485, 542, 558, 581
AlwI	GGATC	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	63, 629
ApeKI	GCWGC	2 cut(s)	116, 425
ApoI	RAATTY	1 cut(s)	251
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	29, 63
AsuC2I	CCSGG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	128, 412
BccI	CCATC	2 cut(s)	412, 462
BceAI	ACGGC	1 cut(s)	644
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	2 cut(s)	285, 644
BcnI	CCSGG	1 cut(s)	36
BfaI	CTAG	2 cut(s)	110, 543
BfuI	GTATCC	2 cut(s)	285, 644
BisI	GCNGC	2 cut(s)	117, 426
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	2 cut(s)	118, 427
Bme1390I	CCNGG	2 cut(s)	36, 663
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 63
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	36, 663
BmsI	GCATC	2 cut(s)	154, 358
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	2 cut(s)	559, 633
Bpu1102I	GCTNAGC	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	662, 678
BsaWI	WCCGGW	2 cut(s)	277, 493
Bse1I	ACTGG	1 cut(s)	364
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	662, 678
BseGI	GGATG	2 cut(s)	473, 569
BseMII	CTCAG	3 cut(s)	189, 573, 624
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	128, 412
BseYI	CCCAGC	2 cut(s)	78, 327
BshFI	GGCC	2 cut(s)	65, 631
BsiSI	CCGG	4 cut(s)	36, 278, 407, 494
BsnI	GGCC	2 cut(s)	65, 631
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	223, 343, 471, 591
Bsp1720I	GCTNAGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	65, 631
BspCNI	CTCAG	3 cut(s)	188, 572, 625
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	2 cut(s)	54, 594
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	662, 678
BssMI	GATC	4 cut(s)	223, 343, 471, 591
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	4 cut(s)	52, 103, 443, 450
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	325, 540
BstDEI	CTNAG	4 cut(s)	175, 554, 559, 633
BstF5I	GGATG	2 cut(s)	473, 569
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	4 cut(s)	226, 346, 474, 594
BstMBI	GATC	4 cut(s)	223, 343, 471, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 548
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	2 cut(s)	34, 661
BstV1I	GCAGC	2 cut(s)	128, 412
BsuI	GTATCC	2 cut(s)	285, 644
BsuRI	GGCC	2 cut(s)	65, 631
BtsCI	GGATG	2 cut(s)	473, 569
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	325, 540
CciI	TCATGA	2 cut(s)	54, 594
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	29, 63
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	39, 446
CviAII	CATG	4 cut(s)	55, 304, 398, 595
CviQI	GTAC	2 cut(s)	39, 446
DdeI	CTNAG	4 cut(s)	175, 554, 559, 633
DpnI	GATC	4 cut(s)	225, 345, 473, 593
DpnII	GATC	4 cut(s)	223, 343, 471, 591
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	661
EcoT14I	CCWWGG	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	4 cut(s)	58, 307, 401, 598
FatI	CATG	4 cut(s)	54, 303, 397, 594
Fnu4HI	GCNGC	2 cut(s)	117, 426
FokI	GGATG	2 cut(s)	480, 576
Fsp4HI	GCNGC	2 cut(s)	117, 426
FspBI	CTAG	2 cut(s)	110, 543
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	2 cut(s)	117, 426
GsaI	CCCAGC	2 cut(s)	82, 331
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	65, 631
HapII	CCGG	4 cut(s)	36, 278, 407, 494
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	4 cut(s)	58, 307, 401, 598
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	286, 511, 658
HpaII	CCGG	4 cut(s)	36, 278, 407, 494
Hpy166II	GTNNAC	2 cut(s)	32, 446
Hpy188I	TCNGA	2 cut(s)	291, 618
Hpy188III	TCNNGA	5 cut(s)	55, 233, 278, 561, 595
Hpy8I	GTNNAC	2 cut(s)	32, 446
HpyAV	CCTTC	2 cut(s)	68, 259
HpyCH4III	ACNGT	4 cut(s)	52, 103, 443, 450
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	149, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 548
HpyF3I	CTNAG	4 cut(s)	175, 554, 559, 633
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	4 cut(s)	58, 307, 401, 598
HspAI	GCGC	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	223, 343, 471, 591
LmnI	GCTCC	2 cut(s)	352, 409
Lsp1109I	GCAGC	2 cut(s)	128, 412
LweI	GCATC	2 cut(s)	154, 358
MaeI	CTAG	2 cut(s)	110, 543
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	133, 520
MalI	GATC	4 cut(s)	225, 345, 473, 593
MboI	GATC	4 cut(s)	223, 343, 471, 591
MboII	GAAGA	4 cut(s)	139, 281, 467, 666
MfeI	CAATTG	1 cut(s)	260
MluCI	AATT	4 cut(s)	251, 260, 339, 489
MlyI	GAGTC	2 cut(s)	505, 652
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	6 cut(s)	240, 301, 325, 405, 562, 640
MroI	TCCGGA	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	2 cut(s)	53, 593
MspI	CCGG	4 cut(s)	36, 278, 407, 494
MspR9I	CCNGG	2 cut(s)	36, 663
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	663
MwoI	GCNNNNNNNGC	2 cut(s)	92, 548
NciI	CCSGG	1 cut(s)	36
NdeII	GATC	4 cut(s)	223, 343, 471, 591
NlaIII	CATG	4 cut(s)	58, 307, 401, 598
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	133, 520
PagI	TCATGA	2 cut(s)	54, 594
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	118, 427
PleI	GAGTC	2 cut(s)	505, 652
PpsI	GAGTC	2 cut(s)	505, 652
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	2 cut(s)	78, 327
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	29, 63
RsaI	GTAC	2 cut(s)	40, 447
RsaNI	GTAC	2 cut(s)	39, 446
RseI	CAYNNNNRTG	2 cut(s)	53, 593
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	2 cut(s)	117, 426
Sau3AI	GATC	4 cut(s)	223, 343, 471, 591
Sau96I	GGNCC	2 cut(s)	29, 63
SchI	GAGTC	2 cut(s)	505, 652
ScrFI	CCNGG	2 cut(s)	36, 663
SfaNI	GCATC	2 cut(s)	154, 358
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	53, 593
Sse9I	AATT	4 cut(s)	251, 260, 339, 489
SspMI	CTAG	2 cut(s)	110, 543
StyD4I	CCNGG	2 cut(s)	34, 661
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	4 cut(s)	52, 103, 443, 450
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	226, 656
TasI	AATT	4 cut(s)	251, 260, 339, 489
TatI	WGTACW	1 cut(s)	445
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	2 cut(s)	133, 520
TseI	GCWGC	2 cut(s)	116, 425
Tsp45I	GTSAC	2 cut(s)	133, 520
TspDTI	ATGAA	2 cut(s)	71, 87
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	110, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.