Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022313.1

Orthogroup ID

OG0009510

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2650

Gene Structure 2650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022313.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

gcctttgatgaaggctggggtgctgtgattgccaaaactgtgtcgctagacgcagcaaaagtgaagaatgtcactccacgatatgcaaagctacgagctgatgcaaatggctcagccaaagggcagattattgggtgggagaatatagaacttataagtgatcgacctcttgaaactatgttgaaagaattcaagcaattgaaggaagagtatccggacaggattctgattgcttcaatcatggaggaatataacaaagctggctgggaggaactaattgatcgtgtggagcaaactggagttgatgcctttgaaatcaacttctcctgtcctcatggtatgccggagcgcaagatgggtgctgctgttgggcaagactgtgtactgttggaagaagtctgtggatggatcaatgccaaagctacaattccggtttgggcaaagatgactcctaacgtcactgacattacacagccagctagagtggctcttagctcaggatgtgagggagtatcagctattaacacgatcatgagtgtaatgggaataaatctgattaccttacggcctgagccttgtgtggagggatactcgactcctgggggctattcttccaaggcagttcatcctattgcacttgcaaaagtgatgagtatcgcaaaaatgatgaaatcagaatttgctaataaagatctttcactttctgggatcggtggtgttgagaccggtggtgatgctgctgaatttatccttctgggagcaaattctgttcaggtctgtactggggttatgatgcatgggtacggcgttgtgaagaaactctgttctgagctaaaggatttcatgagacagcacaatttctcatctatagaagatttcagaggggcttccctcgagtattttacaacgcatactgatttagtacgcagacagcaagaagccatcctacaaagaaaagctgtgaagagagggttgcagtccgacaaagattggacaggagatggtttcgttaaagagaccgagagcatggtctctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016627 GO:0016628 GO:0016651 GO:0017113 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0051716 GO:0055086 GO:0055114 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

346

Amino Acids

37.85

Weight (kDa)

5.46

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17810
fragaria_vesca	FvH4_5g17680 FvH4_5g17680
malus_domestica	MD06G1232500.v1.1 MD14G1239300.v1.1
prunus_persica	Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1
pyrus_communis	pycom06g20670
rosa_chinensis	RchiOBHm_Chr7g0177971
rosa_laevigata	RLG00000005486
rosa_multiflora	Rmu_co8250821.1_g000001 Rmu_sc0022313.1_g000001 Rmu_sc0034489.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275350
rosa_rugosa	Rorug06G0411900 Rorug06G0411900
rosa_samantha	Rh7AG010900 Rh7BG010800 Rh7CG011200 Rh7DG010900
rosa_wichuraiana	Rw7G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AccIII	TCCGGA	1 cut(s)	214
AclWI	GGATC	2 cut(s)	416, 716
AcsI	RAATTY	4 cut(s)	188, 677, 743, 763
AfaI	GTAC	4 cut(s)	384, 781, 803, 924
AgeI	ACCGGT	1 cut(s)	725
AgsI	TTSAA	6 cut(s)	173, 184, 193, 202, 237, 314
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	9 cut(s)	91, 98, 260, 422, 479, 495, 518, 832, 959
AluI	AGCT	9 cut(s)	91, 98, 260, 422, 479, 495, 518, 832, 959
Alw26I	GTCTC	4 cut(s)	716, 841, 1010, 1036
AlwI	GGATC	2 cut(s)	416, 716
Ama87I	CYCGRG	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	3 cut(s)	53, 362, 737
ApoI	RAATTY	4 cut(s)	188, 677, 743, 763
AsiGI	ACCGGT	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	893
BarI	GAAGNNNNNNTAC	2 cut(s)	930, 962
BbvI	GCAGC	3 cut(s)	65, 349, 724
BccI	CCATC	4 cut(s)	349, 399, 950, 995
BceAI	ACGGC	2 cut(s)	581, 820
BciT130I	CCWGG	1 cut(s)	600
BciVI	GTATCC	2 cut(s)	222, 581
BcoDI	GTCTC	4 cut(s)	716, 841, 1010, 1036
BfaI	CTAG	2 cut(s)	47, 480
BfmI	CTRYAG	1 cut(s)	867
BfuI	GTATCC	2 cut(s)	222, 581
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	3 cut(s)	54, 363, 738
BlpI	GCTNAGC	1 cut(s)	112
BlsI	GCNGC	3 cut(s)	55, 364, 739
Bme1390I	CCNGG	1 cut(s)	600
BmeT110I	CYCGRG	1 cut(s)	893
BmrFI	CCNGG	1 cut(s)	600
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	4 cut(s)	91, 295, 724, 783
BmuI	ACTGGG	1 cut(s)	792
BplI	GAGNNNNNCTC	2 cut(s)	575, 607
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	2 cut(s)	496, 570
Bpu1102I	GCTNAGC	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	653
BsaI	GGTCTC	3 cut(s)	716, 1010, 1036
BsaJI	CCNNGG	2 cut(s)	599, 615
BsaWI	WCCGGW	3 cut(s)	214, 430, 725
Bse118I	RCCGGY	1 cut(s)	725
Bse1I	ACTGG	2 cut(s)	301, 787
Bse8I	GATNNNNATC	1 cut(s)	653
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	599, 615
BseGI	GGATG	4 cut(s)	410, 506, 625, 942
BseJI	GATNNNNATC	1 cut(s)	653
BseMII	CTCAG	4 cut(s)	126, 510, 561, 819
BseNI	ACTGG	2 cut(s)	301, 787
BseXI	GCAGC	3 cut(s)	65, 349, 724
BseYI	CCCAGC	2 cut(s)	15, 264
BshFI	GGCC	1 cut(s)	568
BshTI	ACCGGT	1 cut(s)	725
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	4 cut(s)	215, 344, 431, 726
BsmAI	GTCTC	4 cut(s)	716, 841, 1010, 1036
BsnI	GGCC	1 cut(s)	568
Bso31I	GGTCTC	3 cut(s)	716, 1010, 1036
BsoBI	CYCGRG	1 cut(s)	893
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
Bsp1720I	GCTNAGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	4 cut(s)	125, 509, 562, 820
BspEI	TCCGGA	1 cut(s)	214
BspHI	TCATGA	2 cut(s)	531, 843
BspPI	GGATC	2 cut(s)	416, 716
BspTNI	GGTCTC	3 cut(s)	716, 1010, 1036
BsrFI	RCCGGY	1 cut(s)	725
BsrI	ACTGG	2 cut(s)	301, 787
BssAI	RCCGGY	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	599, 615
BssMI	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	3 cut(s)	40, 380, 387
Bst6I	CTCTTC	2 cut(s)	201, 959
BstC8I	GCNNGC	2 cut(s)	262, 477
BstDEI	CTNAG	5 cut(s)	112, 491, 496, 570, 828
BstF5I	GGATG	4 cut(s)	410, 506, 625, 942
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	6 cut(s)	163, 283, 411, 531, 694, 711
BstMAI	GTCTC	4 cut(s)	716, 841, 1010, 1036
BstMBI	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 485
BstNI	CCWGG	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	598
BstSFI	CTRYAG	1 cut(s)	867
BstV1I	GCAGC	3 cut(s)	65, 349, 724
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuI	GTATCC	2 cut(s)	222, 581
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	4 cut(s)	410, 506, 625, 942
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	262, 477
CciI	TCATGA	2 cut(s)	531, 843
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	725
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	4 cut(s)	383, 780, 802, 923
CspAI	ACCGGT	1 cut(s)	725
CviAII	CATG	6 cut(s)	241, 335, 532, 797, 844, 1027
CviQI	GTAC	4 cut(s)	383, 780, 802, 923
DdeI	CTNAG	5 cut(s)	112, 491, 496, 570, 828
DpnI	GATC	6 cut(s)	162, 282, 410, 530, 693, 710
DpnII	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
Eam1104I	CTCTTC	2 cut(s)	201, 959
EarI	CTCTTC	2 cut(s)	201, 959
Eco130I	CCWWGG	1 cut(s)	615
Eco31I	GGTCTC	3 cut(s)	716, 1010, 1036
Eco88I	CYCGRG	1 cut(s)	893
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	6 cut(s)	244, 338, 535, 800, 847, 1030
FatI	CATG	6 cut(s)	240, 334, 531, 796, 843, 1026
Fnu4HI	GCNGC	3 cut(s)	54, 363, 738
FokI	GGATG	4 cut(s)	417, 513, 612, 929
Fsp4HI	GCNGC	3 cut(s)	54, 363, 738
FspBI	CTAG	2 cut(s)	47, 480
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	3 cut(s)	54, 363, 738
GsaI	CCCAGC	2 cut(s)	19, 268
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	4 cut(s)	215, 344, 431, 726
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	6 cut(s)	244, 338, 535, 800, 847, 1030
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	223, 448, 595
HpaII	CCGG	4 cut(s)	215, 344, 431, 726
HphI	GGTGA	1 cut(s)	743
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	6 cut(s)	228, 555, 676, 829, 881, 982
Hpy188III	TCNNGA	5 cut(s)	170, 215, 498, 532, 844
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	5, 196, 761
HpyCH4III	ACNGT	3 cut(s)	40, 380, 387
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	6 cut(s)	86, 104, 635, 641, 796, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 485
HpyF3I	CTNAG	5 cut(s)	112, 491, 496, 570, 828
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	6 cut(s)	244, 338, 535, 800, 847, 1030
HspAI	GCGC	1 cut(s)	349
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
LmnI	GCTCC	3 cut(s)	289, 346, 758
Lsp1109I	GCAGC	3 cut(s)	65, 349, 724
LweI	GCATC	4 cut(s)	91, 295, 724, 783
MaeI	CTAG	2 cut(s)	47, 480
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	70, 457
MalI	GATC	6 cut(s)	162, 282, 410, 530, 693, 710
MboI	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
MboII	GAAGA	7 cut(s)	76, 218, 404, 603, 826, 884, 976
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	691
MluCI	AATT	9 cut(s)	188, 197, 276, 426, 677, 743, 763, 856, 1036
MlyI	GAGTC	2 cut(s)	442, 589
MmeI	TCCRAC	2 cut(s)	369, 1005
MnlI	CCTC	9 cut(s)	177, 238, 262, 342, 499, 577, 875, 902, 962
Mph1103I	ATGCAT	1 cut(s)	798
MroI	TCCGGA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	3 cut(s)	522, 1011, 1039
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	4 cut(s)	215, 344, 431, 726
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	29, 485
NdeII	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
NlaIII	CATG	6 cut(s)	244, 338, 535, 800, 847, 1030
NmuCI	GTSAC	2 cut(s)	70, 457
NsiI	ATGCAT	1 cut(s)	798
PaeR7I	CTCGAG	1 cut(s)	893
PagI	TCATGA	2 cut(s)	531, 843
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	223
PinAI	ACCGGT	1 cut(s)	725
PkrI	GCNGC	3 cut(s)	55, 364, 739
PleI	GAGTC	2 cut(s)	442, 589
PpsI	GAGTC	2 cut(s)	442, 589
PsiI	TTATAA	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	2 cut(s)	15, 264
PspGI	CCWGG	1 cut(s)	598
PspXI	VCTCGAGB	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	4 cut(s)	384, 781, 803, 924
RsaNI	GTAC	4 cut(s)	383, 780, 802, 923
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	3 cut(s)	522, 1011, 1039
SatI	GCNGC	3 cut(s)	54, 363, 738
Sau3AI	GATC	6 cut(s)	160, 280, 408, 528, 691, 708
SchI	GAGTC	2 cut(s)	442, 589
ScrFI	CCNGG	1 cut(s)	600
SfaNI	GCATC	4 cut(s)	91, 295, 724, 783
SfcI	CTRYAG	1 cut(s)	867
Sfr274I	CTCGAG	1 cut(s)	893
SlaI	CTCGAG	1 cut(s)	893
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	9 cut(s)	188, 197, 276, 426, 677, 743, 763, 856, 1036
SspMI	CTAG	2 cut(s)	47, 480
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	3 cut(s)	40, 380, 387
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	3 cut(s)	163, 593, 894
TaqII	GACCGA	1 cut(s)	1034
TasI	AATT	9 cut(s)	188, 197, 276, 426, 677, 743, 763, 856, 1036
TatI	WGTACW	2 cut(s)	382, 779
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	3 cut(s)	522, 1011, 1039
Tru9I	TTAA	3 cut(s)	522, 1011, 1039
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	2 cut(s)	70, 457
TseI	GCWGC	3 cut(s)	53, 362, 737
Tsp45I	GTSAC	2 cut(s)	70, 457
TspDTI	ATGAA	4 cut(s)	24, 614, 683, 832
TspRI	CASTG	1 cut(s)	466
XapI	RAATTY	4 cut(s)	188, 677, 743, 763
XhoI	CTCGAG	1 cut(s)	893
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	2 cut(s)	47, 480
Zsp2I	ATGCAT	1 cut(s)	798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.