MD14G1239300.v1.1

dihydropyrimidine dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
31830433 .. 31834642
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1239300.v1.1.491

Sequence Viewer

Length: 1275 bp
ATGGCGTCTATCAGCTTTACTCAGATCGGAGGCAAAAACCCAGTTGCTGAATTTTCCAGGAGAACTCGTCCTGAGGTGCGTTTAACTCGGCCAAGCCGAGTAGGGTTCAGGGTCTTTGCCTCCGAGAGCAAGGCGGAGCCTGATCTTAGTGTTACTGTTAACGGGTTGCACATGCCCAACCCGTTTGTTATCGGGTCGGGTCCGCCGGGGACTAACTATACGGTGATGAAGAGGGCCTTTGATGAAGGCTGGGGTGCTGTGATTGCCAAAACTGTATCACTAGAGGCAGACAAAGTAAAAAATGTCACTCCTCGATATGCTCGGCTACGAGTAGATGGAAATGGCTCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATAGAACTGATAAGTGATCGACCTCTTGATATTATGTTGAAAGAATTCAAGCAATTAAAAGAAGAGTATCCAGATAGGATTCTGATTGCTTCAATTATGGAGGAATACAACAAAGCTGCCTGGGAGGAACTTATTGACCGTGTTGAGCAAACTGGAGTTGATGCTCTTGAAATCAATTTTTCCTGTCCTCATGGTATGCCAGAGCGCAAGATGGGTGCTGCAGTTGGTCAGGACTGTGTACTTCTGGAAGAAGTTTGTGGCTGGATCAATGCCAAAGCCACAGTTCCTGTTTGGGCAAAGATGACTCCTAACATTACTGACATCACACAGCCAGCTAGAGTCGCTCTGAGCTCAGGATGCGAGGGCGTGTCAGCTATTAATACCATCATGAGTGTAATGGGAATCAATCTAACTACCTTACGGCCCGAGCCTTGTGTGGAGGGATACTCAACTCCTGGGGGCTATTCGGCTAAAGCGGTTCATCCAATTGCACTGGCGAAAGTGATGAACATTGCAAAGTTAATGAAATCAGAGTTTGGTGATACGGATTACTCGCTTTCTGGTATTGGGGGTGTTGAGTCTGGTGGCGATGCTGCTGAGTTTATTCTTCTTGGAGCAAATACTGTTCAGGTATGCACTGGGGTCATGATGCATGGATATGGTGTTGTGAAGAAACTTTGTTCCGAGCTGAAGGATTTTATGAAACAGCACAATTTTTCATCCATTGAAGATTTCAGGGGGGCTTCCCTCGAATACTTTACAACACATACAGATTTAGTAAGAAGACAACAGGAGGCAATCAAACAGAGGAAAGCCATCCGAAAAGGATTGCAATCCGATAAGGACTGGACAGGAGACGGCTTCGTGAAAGAGACCGAGAGCATGGTTTCCAACTGA

Protein Analysis

425

Amino Acids

46.44

Weight (kDa)

6.16

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHO_dh PF01180 49 - 360 8.5e-35 Dihydroorotate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 134, 203, 854
AclWI GGATC 1 cut(s) 650
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 2 cut(s) 50, 422
AcuI CTGAAG 1 cut(s) 1088
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 618
AgsI TTSAA 5 cut(s) 418, 427, 471, 548, 1106
AjnI CCWGG 3 cut(s) 56, 497, 832
AluBI AGCT 6 cut(s) 15, 494, 713, 729, 752, 1066
AluI AGCT 6 cut(s) 15, 494, 713, 729, 752, 1066
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 2 cut(s) 1227, 1244
AlwI GGATC 1 cut(s) 650
AlwNI CAGNNNCTG 2 cut(s) 47, 665
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 3 cut(s) 89, 234, 800
ApeKI GCWGC 3 cut(s) 494, 596, 971
ApoI RAATTY 2 cut(s) 50, 422
AseI ATTAAT 1 cut(s) 756
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 3 cut(s) 200, 234, 801
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 235, 929
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 72
BanII GRGCYC 1 cut(s) 731
BbsI GAAGAC 1 cut(s) 1168
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 3 cut(s) 481, 583, 958
BccI CCATC 4 cut(s) 329, 583, 770, 1202
BceAI ACGGC 2 cut(s) 815, 1252
BciT130I CCWGG 3 cut(s) 58, 499, 834
BciVI GTATCC 2 cut(s) 456, 815
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 1227, 1244
BfaI CTAG 2 cut(s) 281, 714
BfmI CTRYAG 1 cut(s) 597
BfuI GTATCC 2 cut(s) 456, 815
BisI GCNGC 3 cut(s) 495, 597, 972
BlpI GCTNAGC 1 cut(s) 346
BlsI GCNGC 3 cut(s) 496, 598, 973
Bme1390I CCNGG 4 cut(s) 58, 207, 499, 834
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 3 cut(s) 200, 234, 801
BmiI GGNNCC 2 cut(s) 138, 201
BmrFI CCNGG 4 cut(s) 58, 207, 499, 834
BmrI ACTGGG 2 cut(s) 35, 1026
BmsI GCATC 4 cut(s) 529, 725, 958, 1017
BmuI ACTGGG 2 cut(s) 35, 1026
BpiI GAAGAC 1 cut(s) 1168
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 730
Bpu1102I GCTNAGC 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 1210
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1244
BsaJI CCNNGG 3 cut(s) 206, 498, 833
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bse1I ACTGG 5 cut(s) 41, 535, 876, 1021, 1229
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 888
Bse8I GATNNNNATC 1 cut(s) 1210
BseBI CCWGG 3 cut(s) 58, 499, 834
BseDI CCNNGG 3 cut(s) 206, 498, 833
BseGI GGATG 4 cut(s) 740, 859, 1097, 1194
BseJI GATNNNNATC 1 cut(s) 1210
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 6 cut(s) 35, 63, 360, 716, 744, 966
BseNI ACTGG 5 cut(s) 41, 535, 876, 1021, 1229
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 481, 583, 958
BseYI CCCAGC 1 cut(s) 249
BshFI GGCC 3 cut(s) 91, 236, 802
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 1227, 1244
BsmBI CGTCTC 1 cut(s) 1227
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 91, 236, 802
Bso31I GGTCTC 1 cut(s) 1244
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 1 cut(s) 731
Bsp143I GATC 4 cut(s) 24, 142, 394, 642
Bsp1720I GCTNAGC 1 cut(s) 346
BspACI CCGC 3 cut(s) 134, 203, 854
BspANI GGCC 3 cut(s) 91, 236, 802
BspCNI CTCAG 6 cut(s) 34, 64, 359, 717, 743, 967
BspHI TCATGA 2 cut(s) 765, 1023
BspLI GGNNCC 2 cut(s) 138, 201
BspMAI CTGCAG 1 cut(s) 601
BspPI GGATC 1 cut(s) 650
BspTNI GGTCTC 1 cut(s) 1244
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 5 cut(s) 41, 535, 876, 1021, 1229
BssECI CCNNGG 3 cut(s) 206, 498, 833
BssMI GATC 4 cut(s) 24, 142, 394, 642
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 58, 499, 834
Bst4CI ACNGT 7 cut(s) 157, 223, 274, 518, 614, 661, 1003
Bst6I CTCTTC 2 cut(s) 224, 435
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 7 cut(s) 21, 72, 146, 346, 725, 730, 975
BstF5I GGATG 4 cut(s) 740, 859, 1097, 1194
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 4 cut(s) 27, 145, 397, 645
BstMAI GTCTC 2 cut(s) 1227, 1244
BstMBI GATC 4 cut(s) 24, 142, 394, 642
BstMWI GCNNNNNNNGC 3 cut(s) 263, 719, 735
BstNI CCWGG 3 cut(s) 58, 499, 834
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 4 cut(s) 56, 205, 497, 832
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 3 cut(s) 481, 583, 958
BstV2I GAAGAC 1 cut(s) 1168
Bsu36I CCTNAGG 1 cut(s) 72
BsuI GTATCC 2 cut(s) 456, 815
BsuRI GGCC 3 cut(s) 91, 236, 802
BtgZI GCGATG 1 cut(s) 981
BtsCI GGATG 4 cut(s) 740, 859, 1097, 1194
BtsIMutI CAGTG 2 cut(s) 869, 1014
Cac8I GCNNGC 1 cut(s) 711
CaiI CAGNNNCTG 2 cut(s) 47, 665
CciI TCATGA 2 cut(s) 765, 1023
CfoI GCGC 1 cut(s) 585
Cfr13I GGNCC 3 cut(s) 200, 234, 801
Csp6I GTAC 1 cut(s) 617
CviAII CATG 6 cut(s) 172, 569, 766, 1024, 1031, 1261
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 7 cut(s) 21, 72, 146, 346, 725, 730, 975
DpnI GATC 4 cut(s) 26, 144, 396, 644
DpnII GATC 4 cut(s) 24, 142, 394, 642
EaeI YGGCCR 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 224, 435
EarI CTCTTC 2 cut(s) 224, 435
EciI GGCGGA 2 cut(s) 149, 192
Ecl136II GAGCTC 1 cut(s) 729
Eco24I GRGCYC 1 cut(s) 731
Eco31I GGTCTC 1 cut(s) 1244
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 1088
Eco81I CCTNAGG 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 803
EcoICRI GAGCTC 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 422
EcoRII CCWGG 3 cut(s) 56, 497, 832
EcoT22I ATGCAT 1 cut(s) 1032
EcoT38I GRGCYC 1 cut(s) 731
Esp3I CGTCTC 1 cut(s) 1227
FaeI CATG 6 cut(s) 175, 572, 769, 1027, 1034, 1264
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 223
FatI CATG 6 cut(s) 171, 568, 765, 1023, 1030, 1260
Fnu4HI GCNGC 3 cut(s) 495, 597, 972
FokI GGATG 4 cut(s) 747, 846, 1084, 1181
FriOI GRGCYC 1 cut(s) 731
Fsp4HI GCNGC 3 cut(s) 495, 597, 972
FspBI CTAG 2 cut(s) 281, 714
GlaI GCGC 1 cut(s) 584
GluI GCNGC 3 cut(s) 495, 597, 972
GsaI CCCAGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 3 cut(s) 91, 236, 802
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 585
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 175, 572, 769, 1027, 1034, 1264
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 5 cut(s) 457, 682, 717, 780, 956
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 235, 929
Hpy166II GTNNAC 2 cut(s) 160, 617
Hpy188I TCNGA 9 cut(s) 24, 29, 124, 462, 726, 910, 1063, 1199, 1216
Hpy8I GTNNAC 2 cut(s) 160, 617
HpyAV CCTTC 2 cut(s) 239, 1063
HpyCH4III ACNGT 7 cut(s) 157, 223, 274, 518, 614, 661, 1003
HpyCH4V TGCA 7 cut(s) 169, 599, 869, 893, 1014, 1030, 1210
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 719, 735
HpyF3I CTNAG 7 cut(s) 21, 72, 146, 346, 725, 730, 975
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 175, 572, 769, 1027, 1034, 1264
HspAI GCGC 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 24, 142, 394, 642
LmnI GCTCC 2 cut(s) 136, 992
Lsp1109I GCAGC 3 cut(s) 481, 583, 958
LweI GCATC 4 cut(s) 529, 725, 958, 1017
MaeI CTAG 2 cut(s) 281, 714
MaeIII GTNAC 2 cut(s) 151, 304
MalI GATC 4 cut(s) 26, 144, 396, 644
MboI GATC 4 cut(s) 24, 142, 394, 642
MboII GAAGA 7 cut(s) 241, 452, 638, 977, 1060, 1118, 1173
MfeI CAATTG 1 cut(s) 864
MhlI GDGCHC 1 cut(s) 731
MluCI AATT 8 cut(s) 50, 360, 422, 431, 471, 553, 864, 1090
MlyI GAGTC 3 cut(s) 676, 726, 965
Mph1103I ATGCAT 1 cut(s) 1032
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 5 cut(s) 83, 159, 434, 756, 899
MslI CAYNNNNRTG 1 cut(s) 1035
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 4 cut(s) 58, 207, 499, 834
MunI CAATTG 1 cut(s) 864
MvaI CCWGG 3 cut(s) 58, 499, 834
MwoI GCNNNNNNNGC 3 cut(s) 263, 719, 735
NciI CCSGG 1 cut(s) 207
NdeII GATC 4 cut(s) 24, 142, 394, 642
NlaIII CATG 6 cut(s) 175, 572, 769, 1027, 1034, 1264
NlaIV GGNNCC 2 cut(s) 138, 201
NmeAIII GCCGAG 3 cut(s) 67, 122, 301
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 1032
NspI RCATGY 1 cut(s) 175
PagI TCATGA 2 cut(s) 765, 1023
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 457, 780
PfoI TCCNGGA 1 cut(s) 56
PkrI GCNGC 3 cut(s) 496, 598, 973
PleI GAGTC 3 cut(s) 676, 725, 964
PpsI GAGTC 3 cut(s) 676, 725, 964
PshBI ATTAAT 1 cut(s) 756
Psp124BI GAGCTC 1 cut(s) 731
Psp6I CCWGG 3 cut(s) 56, 497, 832
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 3 cut(s) 56, 497, 832
PspN4I GGNNCC 2 cut(s) 138, 201
PspPI GGNCC 3 cut(s) 200, 234, 801
PstI CTGCAG 1 cut(s) 601
PstNI CAGNNNCTG 2 cut(s) 47, 665
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 1 cut(s) 731
SaqAI TTAA 5 cut(s) 83, 159, 434, 756, 899
SatI GCNGC 3 cut(s) 495, 597, 972
Sau3AI GATC 4 cut(s) 24, 142, 394, 642
Sau96I GGNCC 3 cut(s) 200, 234, 801
SchI GAGTC 3 cut(s) 676, 726, 965
ScrFI CCNGG 4 cut(s) 58, 207, 499, 834
SduI GDGCHC 1 cut(s) 731
SfaNI GCATC 4 cut(s) 529, 725, 958, 1017
SfcI CTRYAG 1 cut(s) 597
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 1035
Sse9I AATT 8 cut(s) 50, 360, 422, 431, 471, 553, 864, 1090
SsiI CCGC 3 cut(s) 134, 203, 854
SspMI CTAG 2 cut(s) 281, 714
SstI GAGCTC 1 cut(s) 731
StyD4I CCNGG 4 cut(s) 56, 205, 497, 832
TaaI ACNGT 7 cut(s) 157, 223, 274, 518, 614, 661, 1003
TaqI TCGA 3 cut(s) 313, 397, 1128
TaqII GACCGA 1 cut(s) 1268
TasI AATT 8 cut(s) 50, 360, 422, 431, 471, 553, 864, 1090
TatI WGTACW 1 cut(s) 616
TfiI GAWTC 2 cut(s) 457, 780
Tru1I TTAA 5 cut(s) 83, 159, 434, 756, 899
Tru9I TTAA 5 cut(s) 83, 159, 434, 756, 899
TscAI CASTG 2 cut(s) 876, 1021
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 494, 596, 971
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 7 cut(s) 242, 258, 848, 899, 917, 1086, 1094
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 2 cut(s) 876, 1021
VpaK11BI GGWCC 1 cut(s) 200
VspI ATTAAT 1 cut(s) 756
XapI RAATTY 2 cut(s) 50, 422
XceI RCATGY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 2 cut(s) 281, 714
Zsp2I ATGCAT 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.