Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250821.1

Orthogroup ID

OG0009510

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 789

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 517 bp

gtgtcgctagacgcagcaaaagtgaagaatgtcactccacgatatgcaaagctacgagctgatgcaaatggctcagccaaagggcagattattgggtgggagaatatagaacttataagtgatcgacctcttgaaactatgttgaaagaattcaagcaattgaaggaagagtatccggacaggattctgattgcttcaatcatggaggaatataacaaagctggctgggaggaactaattgatcgtgtggagcaaactggagttgatgcctttgaaatcaacttctcctgtcctcatggtatgccggagcgcaagatgggtgctgctgttgggcaagactgtgtactgttggaagaagtctgtggatggatcaatgccaaagctacaattccggtttgggcaaagatgactcctaacgtcactgacattacacagccagctagagtggctcttagctcaggatgtgagggagtatcagctattaacacgatcatgagtgtaatgggaataaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016627 GO:0016628 GO:0016651 GO:0017113 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0051716 GO:0055086 GO:0055114 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

172

Amino Acids

18.93

Weight (kDa)

4.92

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17810
fragaria_vesca	FvH4_5g17680 FvH4_5g17680
malus_domestica	MD06G1232500.v1.1 MD14G1239300.v1.1
prunus_persica	Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1
pyrus_communis	pycom06g20670
rosa_chinensis	RchiOBHm_Chr7g0177971
rosa_laevigata	RLG00000005486
rosa_multiflora	Rmu_co8250821.1_g000001 Rmu_sc0022313.1_g000001 Rmu_sc0034489.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275350
rosa_rugosa	Rorug06G0411900 Rorug06G0411900
rosa_samantha	Rh7AG010900 Rh7BG010800 Rh7CG011200 Rh7DG010900
rosa_wichuraiana	Rw7G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	175
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	1 cut(s)	345
AgsI	TTSAA	6 cut(s)	134, 145, 154, 163, 198, 275
AluBI	AGCT	7 cut(s)	52, 59, 221, 383, 440, 456, 479
AluI	AGCT	7 cut(s)	52, 59, 221, 383, 440, 456, 479
AlwI	GGATC	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	14, 323
ApoI	RAATTY	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	26, 310
BccI	CCATC	2 cut(s)	310, 360
BciVI	GTATCC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	8, 441
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	2 cut(s)	15, 324
BlpI	GCTNAGC	1 cut(s)	73
BlsI	GCNGC	2 cut(s)	16, 325
BmsI	GCATC	2 cut(s)	52, 256
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	73
BsaWI	WCCGGW	2 cut(s)	175, 391
Bse1I	ACTGG	1 cut(s)	262
BseAI	TCCGGA	1 cut(s)	175
BseGI	GGATG	2 cut(s)	371, 467
BseMII	CTCAG	2 cut(s)	87, 471
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	26, 310
BseYI	CCCAGC	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	176, 305, 392
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	121, 241, 369, 489
Bsp1720I	GCTNAGC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	86, 470
BspEI	TCCGGA	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	492
BspPI	GGATC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	4 cut(s)	121, 241, 369, 489
Bst4CI	ACNGT	2 cut(s)	341, 348
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	223, 438
BstDEI	CTNAG	3 cut(s)	73, 452, 457
BstF5I	GGATG	2 cut(s)	371, 467
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	4 cut(s)	124, 244, 372, 492
BstMBI	GATC	4 cut(s)	121, 241, 369, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	26, 310
BsuI	GTATCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	371, 467
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	223, 438
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	312
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	202, 296, 493
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	3 cut(s)	73, 452, 457
DpnI	GATC	4 cut(s)	123, 243, 371, 491
DpnII	GATC	4 cut(s)	121, 241, 369, 489
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	149
FaeI	CATG	3 cut(s)	205, 299, 496
FaiI	YATR	9 cut(s)	45, 107, 116, 140, 203, 213, 297, 302, 494
FatI	CATG	3 cut(s)	201, 295, 492
Fnu4HI	GCNGC	2 cut(s)	15, 324
FokI	GGATG	2 cut(s)	378, 474
Fsp4HI	GCNGC	2 cut(s)	15, 324
FspBI	CTAG	2 cut(s)	8, 441
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	2 cut(s)	15, 324
GsaI	CCCAGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	3 cut(s)	176, 305, 392
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	3 cut(s)	205, 299, 496
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	184, 409
HpaII	CCGG	3 cut(s)	176, 305, 392
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	2 cut(s)	189, 516
Hpy188III	TCNNGA	4 cut(s)	131, 176, 459, 493
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	341, 348
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	2 cut(s)	47, 65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	73, 452, 457
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	205, 299, 496
HspAI	GCGC	1 cut(s)	310
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	121, 241, 369, 489
LmnI	GCTCC	2 cut(s)	250, 307
Lsp1109I	GCAGC	2 cut(s)	26, 310
LweI	GCATC	2 cut(s)	52, 256
MaeI	CTAG	2 cut(s)	8, 441
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	31, 418
MalI	GATC	4 cut(s)	123, 243, 371, 491
MboI	GATC	4 cut(s)	121, 241, 369, 489
MboII	GAAGA	3 cut(s)	37, 179, 365
MfeI	CAATTG	1 cut(s)	158
MluCI	AATT	4 cut(s)	149, 158, 237, 387
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	138, 199, 223, 303, 460
MroI	TCCGGA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	491
MspI	CCGG	3 cut(s)	176, 305, 392
MunI	CAATTG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	4 cut(s)	121, 241, 369, 489
NlaIII	CATG	3 cut(s)	205, 299, 496
NmuCI	GTSAC	2 cut(s)	31, 418
PagI	TCATGA	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	16, 325
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PsiI	TTATAA	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	15, 324
Sau3AI	GATC	4 cut(s)	121, 241, 369, 489
SchI	GAGTC	1 cut(s)	403
SetI	ASST	9 cut(s)	54, 61, 130, 223, 385, 420, 442, 458, 481
SfaNI	GCATC	2 cut(s)	52, 256
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	149, 158, 237, 387
SspMI	CTAG	2 cut(s)	8, 441
TaaI	ACNGT	2 cut(s)	341, 348
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	124
TasI	AATT	4 cut(s)	149, 158, 237, 387
TatI	WGTACW	1 cut(s)	343
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	31, 418
TseI	GCWGC	2 cut(s)	14, 323
Tsp45I	GTSAC	2 cut(s)	31, 418
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	8, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.