Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009510

Physical Location & Seq

Genomic Coordinates Reverse (-)

55359101 .. 55367596

Gene Structure 8496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0411900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5319 bp

ATGGCCGACATCACCGACTCCGGTTCCCGCCACCACCTCTCCGTTACCACTCCCGCCCAGATCTCCAAAGCTGGACAAGGTTCTGAGAATCCTATTCCACTTTCACCGCAATGGCTTCTGCCAAAGGCGGGGGAGAGTAAGCCTGGAGCGTTTAGTGGGGAAAAACCTCTCAGCCCAAATCCATCATTTGGCAATCGCTCAGACGCCTTGAAGTTGTCAGGAAATGGTGAGGATATTCATGATACCCAGAAGAAAAAGGATGTTTTTAGGCCATCCTTGCTGGACATGGAAACTGGCGGTCATCATGAACGCTGGCGGGATGAAGAAAGGGACACCAATTCTGCTGTGCGCAAGGATCGGTGGAGGGATGGGGACAAAGAGCTTAATGACACTCGCAGGATGGATCGTCGGACAGAAAATGCACCAGCAAAGCACTTTGGAGAGGCACGTCGTGCACCATCAGAAAGGTGGACCGACTCAAGTAACAGGGAGTCCAATTATGAGCAACGGCGAGAGAGCAAATGGAACTCCCGTTGGGGTCCTGATAACAAGGAGGCAGAAGGTTTGCGTGACAAATGGGCTGACTCAGGCCGAGATGGCAGCATGCAGGATAAAGGCTTATCTAATGTTGGAAATCACGGAAAGGATGAGAAGGATGGGGATCACTACCGGCCTTGGAGATCAAACTCTTCCCAAATCCGGGGAAGGGGGGAGCCTTCTCATAACCAGACTCCAGCAGTCAACAAATATATTCCTAGTAGGGGCCGTGGGGAAAATACACCTCCAACCTTTTCTGTTGGCCGTGGAAGGGTTAGCCCTGGTGGAAGCTTTATGAACAGTGTTCCTACAATTTCTCAGTCTGTAGGAATTTCGGACAAAGTTGAAATTGAACATGGAGAGCCTTACCCTTTTAGGTATAGTAGGACAAAGCTGCTTGATGTATACAAGACGGCTGATATGAGATCGTCTCGAAAATTAGTTGATGGGTTTATAGATGTGACTTCTCTTACTTTGGAGGAACCATTGGAGCCTCTGGCTCTTTGTGCACCAAATTCTGAGGAAATGGCTCTTTTGAAGGGAATTGACAAAGGAGATATAGTAAGTAGTGGTGCACCTCAAGTTTCCAAAGATGGAAGGAACCCAGTAGAGTTTACACAAACAAGAAGAACAAAGCTTGGAAGTAGAGAAGACATACCGCTGGCAAATACCGATTCTAAAGATGAACACATTGTTAGCTCAAAAGGTGGTTTTTCGAATTATTTAGAGAGCTCTCCTCATGAACAGCAATTACTTCATCATGGGTCGAGCCTAAAAGCCGAAGCAACGCTGGATCAGAAGACGTACTCAGAGAACAGGTTCAGAGCTGAAGCTCTTAGAGACGATGGAGGTCCTTTCAGAAAGGCCGAGGAGGCACCTAGTAGTAGGGAATTGAGCATGCCGGGAGGAGTGAATGCTCATTCTGTCACTCCATGGAGGGCTCCATCACAGGTGGAACGCTCAAATACGGTCTTTCATGATTGGCAAGAGATTCCCAGAGATATGAAGTCAGGCACACCCCCTGCTATGACGTGGTCACAGAGACAGAAGGATCTAAATAATGACTGGGAAAGTAATCTGGCTGATCCATCTTACACCAGAAATGACGCAAAATGGAAAACCAGTGAAGATCCTATTATTAGAAGGCAGCTATCTGGAGTTGTAGATAGGGAACAGGAAATGAGAAAACCTCAGCAGCCCTCACCGGAGGAACTCCAACTTTATTATAAAGATCCTCATGGTGTAATTCAAGGCCCTTTTTCTGGGGATGACATTATTGGCTGGTTTGAGGCCGGATATTTTGGCATAGATCTGCAAGTTCGTGTGGCAAGTGCACCAAATGATTCACCATTTTCATCACTTGGTGATGTTATGCCTCATTTACGAGCTAAAGCTAGGCCACCTCCTGGATTTAGTGCACCTAAAAATGAAGTTATGGATACCTTAAGTAGGCCAAACCTTGGTAATGTTGGGAAGATTCATGCTGGTTTAAGTGAGGCAGATATAGCAAGAAATGATCCAAGGCTTAAACAGAGTTCAATAACAGAAGCTGAAAATAGGTTTTTGGAGTCGCTGATGTCTGGGAATACGAGTGTTTCTACTCATCAGAAGTTTCCTTTTTCCGAAGGTTTGCAAGGATTTGTTGGAAATAATTCTCATGGTATGCCTCATTCTGGATTGGAAAACCTGTTGGCCAAGAGAATGGCACTTGAACGACAGCGGTCAATACCTAATCCGTATCTTGAAAATCCCCATAACCAAAATGCTGAGATCAAATCAGTCCTTCAAGGATTAACTGATAGGTCTGGCATAAATAATAATGCTGCTGGTTGGTCAAGTTTTTCTGGTCAAGGTGGGTCAGATCCACTACAGAGTAAGATAGACATGTATCATGATCAAAGTTTTCCTACCCAAGCTCCTCTCGGATTCCAACAACAGAGGTTGCAACCTCAAAATCAACCATCTTTTCCAAATCTACTATCTCAAGCTGTTGACAGTTCATCTAGCATTTCAACGCAAGAGAAATTACTCTCTTCTGGCTTATTGCAAGATCCCCAACTGATGAATATATTGCAACAGCAGTACTTGTTGCAGTTACATTCCCAGGCACCTGTTCCAGCACAGCAGATGTCATTATTGGATAAGTACATGTTGATTAAGCAGCAGCAACAGAAGCAGGAGGAGGAACTATTAATTAGGCAACAACAGCAGCTACTTTCCCAGGTTCTTGCGGATCATCAATCCCGCCAAAATTTTTCGGAGCCATCTTTTGGACAGTTACAGGCTGCTGCGATACCACAAGGGAATGCATCAATAGATCCATCTCGGCTTCAGGCATCACAAGAAATGTTTCCACTTGGTACAAATGTGCCAGTTCCTAATATTATGCAAAATGAGCTCACCACTAAGTTTATGGGTCTGCCTCCTCAAGGCACCCAAGATATTCGCCATAATGTAAGTGATGGGGCCCCTTCTTTACCTCTACCACAGAATATTACTCATCAGAGAAGTTGGGATAATACTCATGAGGGACCATTTAATGATGTCCATCAAGATTCATTGCCAGTGTCAAATATTGCCGAGAGATCACCCTTATTTGAGGGGACCCTTGTGCAGAAATCCATCCCAGATTCTGACTTCAATGCTGCCAAAACTGTGGAGCACACATCAGAAAAGACTTCCAGAGATGCGGCAACTGAGGTGGTTTCTGAGACAGTTGCAGATTCTGCATCTCTAAATTCTCCTCGAAGTTTTATTTCTATGCCACCAGGAGCTCGTGAGGAAGATATGCCTGAGCATGTCAATGATGGGAAAGCTCAATTAGATTGTCAGGTTGAAGAGCAGCTGGTTGAAAAGGAAAAATGCAATGAGCAGGCTCCTGCGGTGACTGAAGTAAAGAATGCTGAAGTACGTGGGCAAAAAAAGACATCAGAGAAGAAGTCCAAGAAGCAAAAATCTTCCAAGGCACAGGCTACAAATGACCAGGCAAAAGGAGTATCAAAATCTTCCTCTTCACAGCAAATAGAGCAGTCTGAAACTGACCTCAATTCAGGAATTTCTCCACAAAAGACACGAGGTAACAGAGGCAGTAAATCTGAAATTGGTACTTCGGAGGCTGTGCAATCCCAACAAGGTGGCGGGGCTACTGAATCTCTTCAAGTCAAGGTTGATTCTAAACCAGTTGAGCCTGTTGCAGTGCAGAATACCCAAGTAAATGTTGGACAGAGAGGTTGGAAACCTGCTCCTGGTTTTAAGGCAAAATCACTATTAGAAATTCAACAGGAAGAACAGAGGAAAGTGCAAACTGAAGTGGTAGTATCTGAAGTCCCCAATTCTGTTAATTCGCCAAGTTTATCAACTCCTTGGGCTGGCGTTGTGGCCAATTCAGACACAAAAATATTTAGAGAAAATGAGAGAGATGCAGAGACTAATGAATTAAATGTTGGGAAACCTGGAACTTCAAATCGTATGAGCAAGAAGAGCCCATTACATGATCTTTTGGCAGAGGAGGGTTTGTCCAAGGCTAGTGCAGTCATTGAGGTTCCTAATGGAATTTTAAGTCAGCTGTCTCCACAAGTTATGCCTCATTCAGTACCTGTGGATGATGATAACTTCATTGAGGCTAAAGACACCAAAAGGAGTCGCAAAAAGTCGGCAAAATCAAAGGGTTCTGCAACTAAGGTTTCAGGAGCAGTCACCCCAGTAGAAGTGCCTATTAGTTCAAGCCCCACTGAGAAAGTCAAAAGCTCCCGTTCTGTACAACAGGAAAAGGAAGTACTACCCACAATTCCATCAGGGCCTTCGTTGGGAGATTTTGTTCTTTGGAAGGGAGAAACAGCAAACGCTGCTCCTTCTCCAGCATGGTCCACTGACTCTGGGAAGCTTAATAAACCAACATCTTTAAGAGATATCCAAAAGGAGCAAGGGAAGAGGGTTTCCTCTGCTCAGCATGTGAACCAGATTACAACTCCTCAGAAATCCCAGCCAACTCAAGCCACCCGCAATGGTGCCCCTTCATGGTCACTTTCAGGATCATCTCCATCTAAGCCTGCTTCTCCAATCCAGATCAATTCCCATACTTCTCAGTCAAAGTATAAAGGAGACGATGACCTATTCTGGGGCCCAATTGACCAATCAAAGCAAGAAACCAAACAGGCCGATTTTCCTCAGCTGGCAAGCCAGGGTAGTAGGGGAATGAAAAGTACTCCTGCGAAAGTAACTTCAGGTGGTTCATTAAGCCGGCAGAAATCCGCAAGTGGCAAAGGAACCGAGCGATTACTTTCATCTTCACCGGCCTCTGCTCAGTCCTCTCTGAAAGGAAAAAGAGATGCCATGACCAAGCAATCAGAAGCAATGGACTTCCGAGATTGGTGCAAGAGTGAGTGCGCTAGGCTAATTGGGACAAAAGATACGAGTTTCCTTGAATTTTGCTTGAAGCAATCCAGAGCTGAGGCTGAGTTGCTTCTGATAGAGAATCTTGGGTCTTACGATCCTGATCATGAGTTCATTGAAAAATTTCTCAACTACAAGGAGTTGCTATCAGCCGATGTCCTTGAAATAGCTTTTCAAAGTCGGAATGATCAAAAGGCCACTGGATTCAGTGGTGCAGGTGTCAATTCCTACGGTGCAGATGTTGGGGATGTTGATCAAGATGGTGGGTCCTCCAAAGGGGGTGGCAAGAAGAAGGGGAAGAAAGGGAAGAAGGTTAGCCCTGCCGTCTTGGGATTTAACGTTGTTAGTAACCGGATCATGATGGGTGAGATCCAGTCAGTCGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016491 GO:0016627 GO:0016628 GO:0016651 GO:0017113 GO:0017144 GO:0019860 GO:0031667 GO:0031668 GO:0031669 GO:0034641 GO:0042737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0048037 GO:0050896 GO:0051536 GO:0051540 GO:0051716 GO:0055086 GO:0055114 GO:0071496 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

DHO_dh

Protein Analysis

1772

Amino Acids

194.24

Weight (kDa)

6.49

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GYF	PF02213	587 - 631	2.8e-11	GYF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17810
fragaria_vesca	FvH4_5g17680 FvH4_5g17680
malus_domestica	MD06G1232500.v1.1 MD14G1239300.v1.1
prunus_persica	Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1 Prupe.5G236800_v2.0.a1
pyrus_communis	pycom06g20670
rosa_chinensis	RchiOBHm_Chr7g0177971
rosa_laevigata	RLG00000005486
rosa_multiflora	Rmu_co8250821.1_g000001 Rmu_sc0022313.1_g000001 Rmu_sc0034489.1_g000001
rosa_roxburghii	Rroxscaffold_3G00275350
rosa_rugosa	Rorug06G0411900 Rorug06G0411900
rosa_samantha	Rh7AG010900 Rh7BG010800 Rh7CG011200 Rh7DG010900
rosa_wichuraiana	Rw7G000910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1764
AarI	CACCTGC	1 cut(s)	5135
Acc16I	TGCGCA	1 cut(s)	350
Acc36I	ACCTGC	2 cut(s)	3784, 5135
AccB1I	GGYRCC	4 cut(s)	1411, 2644, 2969, 4544
AccB7I	CCANNNNNTGG	4 cut(s)	188, 1943, 1997, 2807
AccI	GTMKAC	1 cut(s)	942
AclI	AACGTT	1 cut(s)	5268
AcoI	YGGCCR	4 cut(s)	3, 799, 2229, 3915
AcsI	RAATTY	9 cut(s)	867, 1051, 2788, 3274, 3591, 3810, 4089, 4961, 5051
AcuI	CTGAAG	7 cut(s)	1386, 2852, 3447, 3462, 3864, 3879, 4743
AcyI	GRCGYC	1 cut(s)	204
AdeI	CACNNNGTG	2 cut(s)	452, 1901
AflII	CTTAAG	1 cut(s)	1981
AflIII	ACRYGT	2 cut(s)	2421, 2685
AjiI	CACGTC	2 cut(s)	449, 1569
AjuI	GAANNNNNNNTTGG	2 cut(s)	3963, 3995
AloI	GAACNNNNNNTCC	2 cut(s)	4338, 4370
Alw21I	GWGCWC	9 cut(s)	457, 1048, 1114, 1271, 1873, 1957, 2937, 3201, 3313
Alw26I	GTCTC	7 cut(s)	972, 1371, 1573, 3242, 3956, 4110, 4632
Alw44I	GTGCAC	5 cut(s)	453, 1044, 1110, 1869, 1953
AlwNI	CAGNNNCTG	4 cut(s)	2087, 3170, 3263, 4133
ApaI	GGGCCC	2 cut(s)	3007, 4661
ApaLI	GTGCAC	5 cut(s)	453, 1044, 1110, 1869, 1953
ApoI	RAATTY	9 cut(s)	867, 1051, 2788, 3274, 3591, 3810, 4089, 4961, 5051
AseI	ATTAAT	1 cut(s)	2729
Asp700I	GAANNNNTTC	5 cut(s)	1355, 2188, 2886, 3690, 5052
AspLEI	GCGC	2 cut(s)	351, 4925
AsuC2I	CCSGG	2 cut(s)	701, 1440
AsuII	TTCGAA	1 cut(s)	1253
AvaII	GGWCC	7 cut(s)	471, 539, 1388, 3068, 3141, 4401, 5196
BaeGI	GKGCMC	8 cut(s)	457, 1048, 1114, 1873, 1957, 3007, 4549, 4661
BaeI	ACNNNNGTAYC	2 cut(s)	2889, 2922
BalI	TGGCCA	2 cut(s)	2231, 3917
BanI	GGYRCC	4 cut(s)	1411, 2644, 2969, 4544
BanII	GRGCYC	7 cut(s)	1271, 1480, 2937, 3007, 3313, 4022, 4661
BauI	CACGAG	2 cut(s)	3312, 3609
BbsI	GAAGAC	2 cut(s)	1194, 1343
Bbv12I	GWGCWC	9 cut(s)	457, 1048, 1114, 1271, 1873, 1957, 2937, 3201, 3313
BbvCI	CCTCAGC	3 cut(s)	1728, 4704, 4986
BceAI	ACGGC	5 cut(s)	524, 750, 786, 966, 5237
BcgI	CGANNNNNNTGC	2 cut(s)	4890, 4924
BciVI	GTATCC	1 cut(s)	1969
BclI	TGATCA	4 cut(s)	2431, 5032, 5116, 5182
BcnI	CCSGG	2 cut(s)	701, 1440
BcoDI	GTCTC	7 cut(s)	972, 1371, 1573, 3242, 3956, 4110, 4632
BfaI	CTAG	7 cut(s)	756, 1416, 1932, 2541, 4062, 4926, 5317
BfmI	CTRYAG	2 cut(s)	861, 2405
BfrI	CTTAAG	1 cut(s)	1981
BfuAI	ACCTGC	2 cut(s)	3784, 5135
BfuI	GTATCC	1 cut(s)	1969
BglI	GCCNNNNNGGC	2 cut(s)	597, 1409
BglII	AGATCT	2 cut(s)	60, 1846
BlpI	GCTNAGC	1 cut(s)	4482
BmcAI	AGTACT	3 cut(s)	2621, 4314, 4741
Bme18I	GGWCC	7 cut(s)	471, 539, 1388, 3068, 3141, 4401, 5196
BmgBI	CACGTC	2 cut(s)	449, 1569
BmrI	ACTGGG	3 cut(s)	1136, 1612, 4232
BmsI	GCATC	6 cut(s)	2855, 2882, 3214, 3275, 3946, 4855
BmuI	ACTGGG	3 cut(s)	1136, 1612, 4232
BoxI	GACNNNNGTC	1 cut(s)	2257
BpiI	GAAGAC	2 cut(s)	1194, 1343
BplI	GAGNNNNNCTC	6 cut(s)	952, 984, 1258, 1290, 1711, 1743
BpmI	CTGGAG	4 cut(s)	165, 717, 1713, 4377
Bpu10I	CCTNAGC	4 cut(s)	1728, 3330, 4704, 4986
Bpu1102I	GCTNAGC	1 cut(s)	4482
Bpu14I	TTCGAA	1 cut(s)	1253
BpuEI	CTTGAG	5 cut(s)	463, 1101, 2505, 2949, 4512
BpuMI	CCSGG	2 cut(s)	701, 1440
BsaAI	YACGTR	1 cut(s)	3449
BsaBI	GATNNNNATC	4 cut(s)	660, 3084, 5031, 5181
BsaHI	GRCGYC	1 cut(s)	204
BsaWI	WCCGGW	3 cut(s)	20, 1741, 5280
Bse118I	RCCGGY	3 cut(s)	669, 4776, 4828
Bse3DI	GCAATG	5 cut(s)	116, 3095, 3409, 4546, 4896
Bse8I	GATNNNNATC	4 cut(s)	660, 3084, 5031, 5181
BseJI	GATNNNNATC	4 cut(s)	660, 3084, 5031, 5181
BseMI	GCAATG	5 cut(s)	116, 3095, 3409, 4546, 4896
BseRI	GAGGAG	9 cut(s)	1263, 1421, 1458, 2445, 2732, 2952, 3270, 4058, 4497
BseSI	GKGCMC	8 cut(s)	457, 1048, 1114, 1873, 1957, 3007, 4549, 4661
BseYI	CCCAGC	1 cut(s)	4518
BsgI	GTGCAG	5 cut(s)	3170, 3755, 4086, 5163, 5184
BshNI	GGYRCC	4 cut(s)	1411, 2644, 2969, 4544
BsiHKAI	GWGCWC	9 cut(s)	457, 1048, 1114, 1271, 1873, 1957, 2937, 3201, 3313
BsiSI	CCGG	9 cut(s)	21, 670, 700, 1439, 1742, 1830, 4777, 4829, 5281
BslFI	GGGAC	6 cut(s)	344, 386, 3081, 3154, 3848, 4951
BsmAI	GTCTC	7 cut(s)	972, 1371, 1573, 3242, 3956, 4110, 4632
BsmBI	CGTCTC	3 cut(s)	972, 1371, 4632
BsmFI	GGGAC	6 cut(s)	344, 386, 3081, 3154, 3848, 4951
BsmI	GAATGC	3 cut(s)	1456, 2848, 3442
Bsp119I	TTCGAA	1 cut(s)	1253
Bsp120I	GGGCCC	2 cut(s)	3003, 4657
Bsp1407I	TGTACA	1 cut(s)	4294
Bsp1720I	GCTNAGC	1 cut(s)	4482
Bsp19I	CCATGG	1 cut(s)	1469
BspHI	TCATGA	8 cut(s)	238, 304, 1276, 1513, 2428, 3061, 5035, 5286
BspMI	ACCTGC	2 cut(s)	3784, 5135
BspQI	GCTCTTC	2 cut(s)	3369, 4010
BspT104I	TTCGAA	1 cut(s)	1253
BspT107I	GGYRCC	4 cut(s)	1411, 2644, 2969, 4544
BspTI	CTTAAG	1 cut(s)	1981
BsrDI	GCAATG	5 cut(s)	116, 3095, 3409, 4546, 4896
BsrFI	RCCGGY	3 cut(s)	669, 4776, 4828
BsrGI	TGTACA	1 cut(s)	4294
BssAI	RCCGGY	3 cut(s)	669, 4776, 4828
BssNAI	GTATAC	1 cut(s)	943
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	2 cut(s)	3312, 3609
BssT1I	CCWWGG	7 cut(s)	674, 1469, 1996, 2057, 3498, 3899, 4056
Bst1107I	GTATAC	1 cut(s)	943
Bst2BI	CACGAG	2 cut(s)	3312, 3609
Bst4CI	ACNGT	7 cut(s)	839, 1507, 2534, 2814, 3193, 3253, 5162
Bst6I	CTCTTC	7 cut(s)	694, 2575, 3369, 3553, 3696, 4010, 4460
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	1981
BstAPI	GCANNNNNTGC	3 cut(s)	452, 3263, 4382
BstAUI	TGTACA	1 cut(s)	4294
BstBAI	YACGTR	1 cut(s)	3449
BstBI	TTCGAA	1 cut(s)	1253
BstDSI	CCRYGG	3 cut(s)	766, 802, 1469
BstENI	CCTNNNNNAGG	2 cut(s)	1984, 2964
BstHHI	GCGC	2 cut(s)	351, 4925
BstMAI	GTCTC	7 cut(s)	972, 1371, 1573, 3242, 3956, 4110, 4632
BstNSI	RCATGY	6 cut(s)	607, 1438, 2425, 2689, 3338, 4490
BstPAI	GACNNNNGTC	1 cut(s)	2257
BstSFI	CTRYAG	2 cut(s)	861, 2405
BstSLI	GKGCMC	8 cut(s)	457, 1048, 1114, 1873, 1957, 3007, 4549, 4661
BstV2I	GAAGAC	2 cut(s)	1194, 1343
BstX2I	RGATCY	9 cut(s)	60, 1588, 1666, 1768, 1846, 2398, 2587, 2854, 5298
BstXI	CCANNNNNNTGG	3 cut(s)	2239, 3193, 3671
BstYI	RGATCY	9 cut(s)	60, 1588, 1666, 1768, 1846, 2398, 2587, 2854, 5298
BstZ17I	GTATAC	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	1969
BtgI	CCRYGG	3 cut(s)	766, 802, 1469
BtrI	CACGTC	2 cut(s)	449, 1569
BtsI	GCAGTG	1 cut(s)	3738
BtsIMutI	CAGTG	8 cut(s)	844, 1666, 3108, 3738, 4266, 4404, 5127, 5143
BveI	ACCTGC	2 cut(s)	3784, 5135
CaiI	CAGNNNCTG	4 cut(s)	2087, 3170, 3263, 4133
CciI	TCATGA	8 cut(s)	238, 304, 1276, 1513, 2428, 3061, 5035, 5286
CfoI	GCGC	2 cut(s)	351, 4925
Cfr10I	RCCGGY	3 cut(s)	669, 4776, 4828
CseI	GACGC	2 cut(s)	212, 1652
CspCI	CAANNNNNGTGG	4 cut(s)	3219, 3254, 5191, 5226
DraIII	CACNNNGTG	2 cut(s)	452, 1901
EaeI	YGGCCR	4 cut(s)	3, 799, 2229, 3915
Eam1104I	CTCTTC	7 cut(s)	694, 2575, 3369, 3553, 3696, 4010, 4460
EarI	CTCTTC	7 cut(s)	694, 2575, 3369, 3553, 3696, 4010, 4460
Ecl136II	GAGCTC	3 cut(s)	1269, 2935, 3311
Eco130I	CCWWGG	7 cut(s)	674, 1469, 1996, 2057, 3498, 3899, 4056
Eco24I	GRGCYC	7 cut(s)	1271, 1480, 2937, 3007, 3313, 4022, 4661
Eco32I	GATATC	1 cut(s)	4447
Eco47I	GGWCC	7 cut(s)	471, 539, 1388, 3068, 3141, 4401, 5196
Eco53kI	GAGCTC	3 cut(s)	1269, 2935, 3311
Eco57I	CTGAAG	7 cut(s)	1386, 2852, 3447, 3462, 3864, 3879, 4743
EcoICRI	GAGCTC	3 cut(s)	1269, 2935, 3311
EcoNI	CCTNNNNNAGG	2 cut(s)	1984, 2964
EcoO109I	RGGNCCY	9 cut(s)	539, 1388, 1790, 3003, 3004, 3141, 4334, 4657, 5196
EcoRV	GATATC	1 cut(s)	4447
EcoT14I	CCWWGG	7 cut(s)	674, 1469, 1996, 2057, 3498, 3899, 4056
EcoT22I	ATGCAT	1 cut(s)	2848
EcoT38I	GRGCYC	7 cut(s)	1271, 1480, 2937, 3007, 3313, 4022, 4661
ErhI	CCWWGG	7 cut(s)	674, 1469, 1996, 2057, 3498, 3899, 4056
Esp3I	CGTCTC	3 cut(s)	972, 1371, 4632
FaqI	GGGAC	6 cut(s)	344, 386, 3081, 3154, 3848, 4951
FauI	CCCGC	7 cut(s)	35, 61, 121, 309, 2789, 3668, 4544
FbaI	TGATCA	4 cut(s)	2431, 5032, 5116, 5182
FblI	GTMKAC	1 cut(s)	942
FriOI	GRGCYC	7 cut(s)	1271, 1480, 2937, 3007, 3313, 4022, 4661
FspBI	CTAG	7 cut(s)	756, 1416, 1932, 2541, 4062, 4926, 5317
FspI	TGCGCA	1 cut(s)	350
GlaI	GCGC	2 cut(s)	350, 4924
GsaI	CCCAGC	1 cut(s)	4522
GsuI	CTGGAG	4 cut(s)	165, 717, 1713, 4377
HapII	CCGG	9 cut(s)	21, 670, 700, 1439, 1742, 1830, 4777, 4829, 5281
HgaI	GACGC	2 cut(s)	212, 1652
HhaI	GCGC	2 cut(s)	351, 4925
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	2 cut(s)	349, 4923
HinP1I	GCGC	2 cut(s)	349, 4923
HincII	GTYRAC	2 cut(s)	742, 2530
HindII	GTYRAC	2 cut(s)	742, 2530
HindIII	AAGCTT	3 cut(s)	826, 1172, 4418
HpaII	CCGG	9 cut(s)	21, 670, 700, 1439, 1742, 1830, 4777, 4829, 5281
Hpy99I	CGWCG	2 cut(s)	411, 453
HpyCH4III	ACNGT	7 cut(s)	839, 1507, 2534, 2814, 3193, 3253, 5162
HpyCH4IV	ACGT	5 cut(s)	448, 1340, 1568, 3448, 5268
HpySE526I	ACGT	5 cut(s)	448, 1340, 1568, 3448, 5268
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	2 cut(s)	349, 4923
KflI	GGGWCCC	1 cut(s)	3141
KroI	GCCGGC	1 cut(s)	4776
KroNI	GCCGGC	1 cut(s)	4778
Ksp22I	TGATCA	4 cut(s)	2431, 5032, 5116, 5182
LguI	GCTCTTC	2 cut(s)	3369, 4010
LweI	GCATC	6 cut(s)	2855, 2882, 3214, 3275, 3946, 4855
MaeI	CTAG	7 cut(s)	756, 1416, 1932, 2541, 4062, 4926, 5317
MaeII	ACGT	5 cut(s)	448, 1340, 1568, 3448, 5268
MfeI	CAATTG	1 cut(s)	4662
MflI	RGATCY	9 cut(s)	60, 1588, 1666, 1768, 1846, 2398, 2587, 2854, 5298
MlsI	TGGCCA	2 cut(s)	2231, 3917
MluNI	TGGCCA	2 cut(s)	2231, 3917
MlyI	GAGTC	8 cut(s)	11, 470, 500, 578, 724, 2114, 4186, 4403
MmeI	TCCRAC	9 cut(s)	389, 610, 809, 1777, 2161, 2491, 3736, 3749, 5090
Mox20I	TGGCCA	2 cut(s)	2231, 3917
Mph1103I	ATGCAT	1 cut(s)	2848
MroNI	GCCGGC	1 cut(s)	4776
MroXI	GAANNNNTTC	5 cut(s)	1355, 2188, 2886, 3690, 5052
MscI	TGGCCA	2 cut(s)	2231, 3917
MslI	CAYNNNNRTG	2 cut(s)	109, 3339
Msp20I	TGGCCA	2 cut(s)	2231, 3917
MspA1I	CMGCKG	5 cut(s)	1198, 2257, 3382, 4102, 4708
MspCI	CTTAAG	1 cut(s)	1981
MspI	CCGG	9 cut(s)	21, 670, 700, 1439, 1742, 1830, 4777, 4829, 5281
MunI	CAATTG	1 cut(s)	4662
Mva1269I	GAATGC	3 cut(s)	1456, 2848, 3442
NaeI	GCCGGC	1 cut(s)	4778
NciI	CCSGG	2 cut(s)	701, 1440
NcoI	CCATGG	1 cut(s)	1469
NgoMIV	GCCGGC	1 cut(s)	4776
NmeAIII	GCCGAG	4 cut(s)	617, 1429, 2842, 3142
NmuCI	GTSAC	7 cut(s)	569, 997, 1462, 1572, 3421, 4231, 4557
NsbI	TGCGCA	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	2848
NspI	RCATGY	6 cut(s)	607, 1438, 2425, 2689, 3338, 4490
NspV	TTCGAA	1 cut(s)	1253
PaeI	GCATGC	2 cut(s)	607, 1438
PagI	TCATGA	8 cut(s)	238, 304, 1276, 1513, 2428, 3061, 5035, 5286
PaqCI	CACCTGC	1 cut(s)	5135
PciI	ACATGT	2 cut(s)	2421, 2685
PciSI	GCTCTTC	2 cut(s)	3369, 4010
PctI	GAATGC	3 cut(s)	1456, 2848, 3442
PdiI	GCCGGC	1 cut(s)	4778
PdmI	GAANNNNTTC	5 cut(s)	1355, 2188, 2886, 3690, 5052
PflFI	GACNNNGTC	1 cut(s)	1570
PflMI	CCANNNNNTGG	4 cut(s)	188, 1943, 1997, 2807
PfoI	TCCNGGA	1 cut(s)	1942
PleI	GAGTC	8 cut(s)	11, 470, 499, 578, 724, 2113, 4185, 4403
PpsI	GAGTC	8 cut(s)	11, 470, 499, 578, 724, 2113, 4185, 4403
Ppu21I	YACGTR	1 cut(s)	3449
PpuMI	RGGWCCY	4 cut(s)	539, 1388, 3141, 5196
PscI	ACATGT	2 cut(s)	2421, 2685
PshAI	GACNNNNGTC	1 cut(s)	2257
PshBI	ATTAAT	1 cut(s)	2729
PsiI	TTATAA	1 cut(s)	1764
Psp124BI	GAGCTC	3 cut(s)	1271, 2937, 3313
Psp1406I	AACGTT	1 cut(s)	5268
Psp5II	RGGWCCY	4 cut(s)	539, 1388, 3141, 5196
PspFI	CCCAGC	1 cut(s)	4518
PspOMI	GGGCCC	2 cut(s)	3003, 4657
PspPPI	RGGWCCY	4 cut(s)	539, 1388, 3141, 5196
PsrI	GAACNNNNNNTAC	2 cut(s)	1272, 1304
PstNI	CAGNNNCTG	4 cut(s)	2087, 3170, 3263, 4133
PsuI	RGATCY	9 cut(s)	60, 1588, 1666, 1768, 1846, 2398, 2587, 2854, 5298
PsyI	GACNNNGTC	1 cut(s)	1570
PvuII	CAGCTG	3 cut(s)	3382, 4102, 4708
RseI	CAYNNNNRTG	2 cut(s)	109, 3339
SacI	GAGCTC	3 cut(s)	1271, 2937, 3313
SapI	GCTCTTC	2 cut(s)	3369, 4010
ScaI	AGTACT	3 cut(s)	2621, 4314, 4741
SchI	GAGTC	8 cut(s)	11, 470, 500, 578, 724, 2114, 4186, 4403
SfaNI	GCATC	6 cut(s)	2855, 2882, 3214, 3275, 3946, 4855
SfcI	CTRYAG	2 cut(s)	861, 2405
SfuI	TTCGAA	1 cut(s)	1253
SinI	GGWCC	7 cut(s)	471, 539, 1388, 3068, 3141, 4401, 5196
SmiMI	CAYNNNNRTG	2 cut(s)	109, 3339
SmlI	CTYRAG	6 cut(s)	478, 1116, 1981, 2520, 2964, 4527
SmoI	CTYRAG	6 cut(s)	478, 1116, 1981, 2520, 2964, 4527
SphI	GCATGC	2 cut(s)	607, 1438
SspI	AATATT	4 cut(s)	2920, 3031, 3112, 3936
SspMI	CTAG	7 cut(s)	756, 1416, 1932, 2541, 4062, 4926, 5317
SstI	GAGCTC	3 cut(s)	1271, 2937, 3313
StyI	CCWWGG	7 cut(s)	674, 1469, 1996, 2057, 3498, 3899, 4056
TaaI	ACNGT	7 cut(s)	839, 1507, 2534, 2814, 3193, 3253, 5162
TaiI	ACGT	5 cut(s)	451, 1343, 1571, 3451, 5271
TaqI	TCGA	5 cut(s)	970, 1253, 1304, 3283, 5310
TaqII	GACCGA	1 cut(s)	488
TatI	WGTACW	5 cut(s)	2619, 2682, 4294, 4312, 4739
TauI	GCSGC	1 cut(s)	3230
TscAI	CASTG	8 cut(s)	844, 1666, 3108, 3738, 4273, 4411, 5134, 5143
TseFI	GTSAC	7 cut(s)	569, 997, 1462, 1572, 3421, 4231, 4557
Tsp45I	GTSAC	7 cut(s)	569, 997, 1462, 1572, 3421, 4231, 4557
TspGWI	ACGGA	3 cut(s)	31, 654, 2262
TspRI	CASTG	8 cut(s)	844, 1666, 3108, 3738, 4273, 4411, 5134, 5143
Tth111I	GACNNNGTC	1 cut(s)	1570
Van91I	CCANNNNNTGG	4 cut(s)	188, 1943, 1997, 2807
Vha464I	CTTAAG	1 cut(s)	1981
VneI	GTGCAC	5 cut(s)	453, 1044, 1110, 1869, 1953
VpaK11BI	GGWCC	7 cut(s)	471, 539, 1388, 3068, 3141, 4401, 5196
VspI	ATTAAT	1 cut(s)	2729
XagI	CCTNNNNNAGG	2 cut(s)	1984, 2964
XapI	RAATTY	9 cut(s)	867, 1051, 2788, 3274, 3591, 3810, 4089, 4961, 5051
XceI	RCATGY	6 cut(s)	607, 1438, 2425, 2689, 3338, 4490
XcmI	CCANNNNNNNNNTGG	3 cut(s)	465, 2947, 3752
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	5 cut(s)	1355, 2188, 2886, 3690, 5052
XspI	CTAG	7 cut(s)	756, 1416, 1932, 2541, 4062, 4926, 5317
ZrmI	AGTACT	3 cut(s)	2621, 4314, 4741
Zsp2I	ATGCAT	1 cut(s)	2848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.