AT3G17950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012333
Physical Location & Seq
Forward (+)
6146015 .. 6147354
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17950.1

Sequence Viewer

Length: 636 bp
ATGCAAGATCCTCATGTCCCATCTTCTCCAACTATCTCCTCCGTCTCTTCCTCCGATCTTGATACTGAGTCAACAGGATCGTTCTTCCATGACAGAAGCATCACACTTGGAACGCTTATGGGATTTAGTTTCACTGCAACTATGCCGATGCCATTTAGAGCCTCTTCACGCCGCCACGTGTCACCTTCCGTCGCAATCTCACGAGCTTCTAGCTCCAATGCAAGACGCAACCACCAGAGAAAGCGTCCTCCTTCAAATTCGGCTGAGCCTGAGCCGCATCGCCGCCGTAAATGGTGGCGGTTTTGCCGAGATGACGATGACGACGCCGCCGGAAATGGAATCCACCGTGGAACAGGAGATTCAAAGCGGTCATCGCTCGGGGAGTATCTAGAGGTGGAACGGAGGTTTGGAGATGAAGCCGTTTACAACTCCGCCGAGGCAGAGCTAGAGGATGCGGTGGTGGCACGGTACCAAGATCAGCAGCCGGTGATGGGGGAGCGGGCATTGTTCGCTGACGGAAGGGTTCTTCCTCCGGCTTCAGCTGAAGTGGTTACCGGAGAAGGAACGCCGGTAGCCACGTCCCTTTGTAGATTTCCGGTATCTTTAACCGGTATATGCAGCGGTGGTGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.9

Weight (kDa)

6.31

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AccBSI CCGCTC 1 cut(s) 499
AclWI GGATC 2 cut(s) 2, 85
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 2 cut(s) 522, 564
AcvI CACGTG 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 177
AgeI ACCGGT 1 cut(s) 608
AgsI TTSAA 2 cut(s) 255, 363
AjiI CACGTC 1 cut(s) 579
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AluBI AGCT 4 cut(s) 206, 213, 445, 542
AluI AGCT 4 cut(s) 206, 213, 445, 542
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 2 cut(s) 2, 85
Ama87I CYCGRG 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 481, 618
ApoI RAATTY 1 cut(s) 256
AsiGI ACCGGT 1 cut(s) 608
Asp718I GGTACC 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 174, 499
AvaI CYCGRG 1 cut(s) 377
BanI GGYRCC 1 cut(s) 468
BauI CACGAG 1 cut(s) 201
BbrPI CACGTG 1 cut(s) 178
BbvI GCAGC 2 cut(s) 493, 630
BccI CCATC 2 cut(s) 28, 484
BceAI ACGGC 2 cut(s) 270, 404
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 3 cut(s) 210, 389, 446
BisI GCNGC 6 cut(s) 172, 275, 283, 327, 482, 619
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 6 cut(s) 173, 276, 284, 328, 483, 620
BmeT110I CYCGRG 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 579
BmiI GGNNCC 1 cut(s) 470
BmsI GCATC 4 cut(s) 108, 138, 286, 442
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 346, 435
BsaWI WCCGGW 3 cut(s) 554, 595, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse118I RCCGGY 3 cut(s) 484, 568, 608
BseDI CCNNGG 2 cut(s) 346, 435
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 57, 255, 261
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 2 cut(s) 493, 630
BshNI GGYRCC 1 cut(s) 468
BshTI ACCGGT 1 cut(s) 608
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 7 cut(s) 330, 485, 533, 555, 569, 596, 609
BslFI GGGAC 2 cut(s) 2, 565
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 2 cut(s) 2, 565
BsoBI CYCGRG 1 cut(s) 377
Bsp143I GATC 4 cut(s) 7, 55, 77, 475
Bsp1720I GCTNAGC 1 cut(s) 264
BspCNI CTCAG 3 cut(s) 58, 256, 262
BspLI GGNNCC 1 cut(s) 470
BspPI GGATC 2 cut(s) 2, 85
BspT107I GGYRCC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 499
BsrFI RCCGGY 3 cut(s) 484, 568, 608
BssAI RCCGGY 3 cut(s) 484, 568, 608
BssECI CCNNGG 2 cut(s) 346, 435
BssMI GATC 4 cut(s) 7, 55, 77, 475
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 347, 468
Bst6I CTCTTC 2 cut(s) 52, 169
BstACI GRCGYC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 3 cut(s) 66, 264, 270
BstDSI CCRYGG 1 cut(s) 346
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 4 cut(s) 10, 58, 80, 478
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 4 cut(s) 7, 55, 77, 475
BstMWI GCNNNNNNNGC 4 cut(s) 274, 373, 461, 509
BstPI GGTNACC 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 493, 630
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 346
BtgZI GCGATG 2 cut(s) 263, 357
BtrI CACGTC 1 cut(s) 579
BtsCI GGATG 1 cut(s) 457
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 501
Cfr10I RCCGGY 3 cut(s) 484, 568, 608
CseI GACGC 3 cut(s) 233, 234, 332
Csp6I GTAC 1 cut(s) 469
CspAI ACCGGT 1 cut(s) 608
CviAII CATG 2 cut(s) 14, 89
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 3 cut(s) 66, 264, 270
DpnI GATC 4 cut(s) 9, 57, 79, 477
DpnII GATC 4 cut(s) 7, 55, 77, 475
Eam1104I CTCTTC 2 cut(s) 52, 169
EarI CTCTTC 2 cut(s) 52, 169
EciI GGCGGA 1 cut(s) 421
Eco57I CTGAAG 2 cut(s) 522, 564
Eco72I CACGTG 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 377
Eco91I GGTNACC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 550
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 2 cut(s) 17, 92
FaiI YATR 6 cut(s) 15, 90, 119, 143, 614, 616
FaqI GGGAC 2 cut(s) 2, 565
FatI CATG 2 cut(s) 13, 88
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 6 cut(s) 172, 275, 283, 327, 482, 619
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 6 cut(s) 172, 275, 283, 327, 482, 619
FspBI CTAG 3 cut(s) 210, 389, 446
GluI GCNGC 6 cut(s) 172, 275, 283, 327, 482, 619
HapII CCGG 7 cut(s) 330, 485, 533, 555, 569, 596, 609
HgaI GACGC 3 cut(s) 233, 234, 332
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 2 cut(s) 17, 92
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 3 cut(s) 68, 339, 359
HpaII CCGG 7 cut(s) 330, 485, 533, 555, 569, 596, 609
HphI GGTGA 2 cut(s) 174, 499
Hpy166II GTNNAC 2 cut(s) 72, 424
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 59, 201, 389
Hpy8I GTNNAC 2 cut(s) 72, 424
Hpy99I CGWCG 2 cut(s) 194, 326
HpyAV CCTTC 4 cut(s) 195, 261, 513, 554
HpyCH4III ACNGT 2 cut(s) 347, 468
HpyCH4IV ACGT 2 cut(s) 177, 578
HpyCH4V TGCA 4 cut(s) 4, 137, 221, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 274, 373, 461, 509
HpyF3I CTNAG 3 cut(s) 66, 264, 270
HpySE526I ACGT 2 cut(s) 177, 578
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 2 cut(s) 17, 92
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 4 cut(s) 7, 55, 77, 475
LmnI GCTCC 2 cut(s) 218, 496
Lsp1109I GCAGC 2 cut(s) 493, 630
LweI GCATC 4 cut(s) 108, 138, 286, 442
MaeI CTAG 3 cut(s) 210, 389, 446
MaeII ACGT 2 cut(s) 177, 578
MaeIII GTNAC 2 cut(s) 180, 550
MalI GATC 4 cut(s) 9, 57, 79, 477
MbiI CCGCTC 1 cut(s) 499
MboI GATC 4 cut(s) 7, 55, 77, 475
MboII GAAGA 5 cut(s) 15, 39, 76, 156, 518
MflI RGATCY 1 cut(s) 7
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 53
MseI TTAA 1 cut(s) 605
MspA1I CMGCKG 2 cut(s) 542, 621
MspI CCGG 7 cut(s) 330, 485, 533, 555, 569, 596, 609
MwoI GCNNNNNNNGC 4 cut(s) 274, 373, 461, 509
NdeII GATC 4 cut(s) 7, 55, 77, 475
NlaIII CATG 2 cut(s) 17, 92
NlaIV GGNNCC 1 cut(s) 470
NmeAIII GCCGAG 2 cut(s) 332, 460
NmuCI GTSAC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 339, 359
PinAI ACCGGT 1 cut(s) 608
PkrI GCNGC 6 cut(s) 173, 276, 284, 328, 483, 620
PleI GAGTC 1 cut(s) 76
PmaCI CACGTG 1 cut(s) 178
PmlI CACGTG 1 cut(s) 178
PpsI GAGTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 178
PspCI CACGTG 1 cut(s) 178
PspEI GGTNACC 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 470
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 6 cut(s) 172, 275, 283, 327, 482, 619
Sau3AI GATC 4 cut(s) 7, 55, 77, 475
SchI GAGTC 1 cut(s) 77
SetI ASST 9 cut(s) 180, 187, 208, 215, 396, 407, 447, 544, 581
SfaNI GCATC 4 cut(s) 108, 138, 286, 442
Sse9I AATT 1 cut(s) 256
SspMI CTAG 3 cut(s) 210, 389, 446
TaaI ACNGT 2 cut(s) 347, 468
TaiI ACGT 2 cut(s) 180, 581
TasI AATT 1 cut(s) 256
TauI GCSGC 4 cut(s) 174, 277, 285, 329
TfiI GAWTC 2 cut(s) 339, 359
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 2 cut(s) 481, 618
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 429
TspGWI ACGGA 4 cut(s) 31, 178, 415, 531
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 388
XspI CTAG 3 cut(s) 210, 389, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.