Rorug06G0415200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012333
Physical Location & Seq
Reverse (-)
55515575 .. 55516572
998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0415200.1

Sequence Viewer

Length: 609 bp
ATGCAAGGAATTGCTAGGGCTGTGAGATCATGCCATGAGATACTCAAAGCTGCAGCTTTGGAGCATTCCTGCAGGAGACGAATTGCTTGGGTAGAAAGGTTAGGTTCAAGTTGTAAATGGGTTACCTCTCCAGCCCTAAAAGGATTGGAGAACGTGACTGTGGAAGATGTACTGATGAAAAAGAGCGAAGAAACTGGACCTTGGCTCTGGTGCCACACAAATGACACTGTTATTGATGCTATAAAAAATATGGCTAAAAACAATATCGGGTCATTAGTTGTACTAAAGCCTGGAGAGCAACAATATATTGCAGGAATCATCACAGAAAGAGATTATGTGAGGAAAATAGTTGCACAGGACAGATCACCCATGTACACTAGGGTTGGAGAGATTATGACTAATGAGAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGAGAATCAAATTCGGCATGTACCGGTCATAGATGGCAAGCTAGTTGGCATGATTTCGATCAAAGATGTTGTTCGAGCAGTAGTGGAGCAGCAAAGCGGGGAATTGAAGCAACTAAATGAGTACATTAGAGGAGATTACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.83

Weight (kDa)

8.31

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 67 - 117 2e-07 CBS domain
CBS PF00571 128 - 183 4e-15 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AciI CCGC 1 cut(s) 561
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 428
AfaI GTAC 5 cut(s) 171, 282, 374, 486, 587
AgeI ACCGGT 1 cut(s) 487
AgsI TTSAA 2 cut(s) 108, 571
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 50, 56, 505
AluI AGCT 3 cut(s) 50, 56, 505
Alw26I GTCTC 1 cut(s) 70
ApeKI GCWGC 3 cut(s) 50, 53, 553
ApoI RAATTY 1 cut(s) 474
AseI ATTAAT 1 cut(s) 413
AsiGI ACCGGT 1 cut(s) 487
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 357
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 37, 65, 565
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 15, 378, 506
BfmI CTRYAG 2 cut(s) 51, 70
BisI GCNGC 3 cut(s) 51, 54, 554
BlsI GCNGC 3 cut(s) 52, 55, 555
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 2 cut(s) 114, 312
BsaBI GATNNNNATC 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 487
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 521
BseMI GCAATG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 609
BseXI GCAGC 3 cut(s) 37, 65, 565
BshNI GGYRCC 1 cut(s) 210
BshTI ACCGGT 1 cut(s) 487
BsiSI CCGG 1 cut(s) 488
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 3 cut(s) 26, 362, 522
BspACI CCGC 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 212
BspMAI CTGCAG 2 cut(s) 55, 74
BspT107I GGYRCC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 487
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 26, 362, 522
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 160, 229, 421
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 503
BstEII GGTNACC 1 cut(s) 121
BstKTI GATC 3 cut(s) 29, 365, 525
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 26, 362, 522
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 485
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 51, 70
BstV1I GCAGC 3 cut(s) 37, 65, 565
BtsIMutI CAGTG 2 cut(s) 225, 426
Cac8I GCNNGC 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 5 cut(s) 170, 281, 373, 485, 586
CspAI ACCGGT 1 cut(s) 487
CviAII CATG 5 cut(s) 30, 35, 370, 482, 514
CviJI RGCY 8 cut(s) 20, 50, 56, 134, 205, 254, 289, 505
CviKI_1 RGCY 8 cut(s) 20, 50, 56, 134, 205, 254, 289, 505
CviQI GTAC 5 cut(s) 170, 281, 373, 485, 586
DpnI GATC 3 cut(s) 28, 364, 524
DpnII GATC 3 cut(s) 26, 362, 522
Eco130I CCWWGG 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 5 cut(s) 33, 38, 373, 485, 517
FatI CATG 5 cut(s) 29, 34, 369, 481, 513
FauI CCCGC 1 cut(s) 554
Fnu4HI GCNGC 3 cut(s) 51, 54, 554
Fsp4HI GCNGC 3 cut(s) 51, 54, 554
FspBI CTAG 3 cut(s) 15, 378, 506
GluI GCNGC 3 cut(s) 51, 54, 554
GsuI CTGGAG 2 cut(s) 114, 312
HapII CCGG 1 cut(s) 488
Hin1II CATG 5 cut(s) 33, 38, 373, 485, 517
HinfI GANTC 2 cut(s) 315, 469
HpaII CCGG 1 cut(s) 488
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 1 cut(s) 430
Hpy8I GTNNAC 1 cut(s) 375
HpyCH4III ACNGT 3 cut(s) 160, 229, 421
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 4, 53, 72, 311, 353, 454
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 5 cut(s) 33, 38, 373, 485, 517
Kzo9I GATC 3 cut(s) 26, 362, 522
LmnI GCTCC 2 cut(s) 61, 550
Lsp1109I GCAGC 3 cut(s) 37, 65, 565
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 15, 378, 506
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 3 cut(s) 121, 154, 421
MalI GATC 3 cut(s) 28, 364, 524
MboI GATC 3 cut(s) 26, 362, 522
MboII GAAGA 3 cut(s) 176, 200, 434
MluCI AATT 5 cut(s) 9, 81, 410, 474, 566
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 3 cut(s) 136, 333, 587
MseI TTAA 1 cut(s) 413
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 3 cut(s) 26, 362, 522
NlaIII CATG 5 cut(s) 33, 38, 373, 485, 517
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 154, 421
NspI RCATGY 1 cut(s) 485
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 315, 469
PinAI ACCGGT 1 cut(s) 487
PkrI GCNGC 3 cut(s) 52, 55, 555
PshBI ATTAAT 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 2 cut(s) 55, 74
RsaI GTAC 5 cut(s) 171, 282, 374, 486, 587
RsaNI GTAC 5 cut(s) 170, 281, 373, 485, 586
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 3 cut(s) 51, 54, 554
Sau3AI GATC 3 cut(s) 26, 362, 522
Sau96I GGNCC 1 cut(s) 197
SbfI CCTGCAGG 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 291
SdaI CCTGCAGG 1 cut(s) 74
SetI ASST 8 cut(s) 52, 58, 101, 106, 128, 156, 202, 507
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 51, 70
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse8387I CCTGCAGG 1 cut(s) 74
Sse9I AATT 5 cut(s) 9, 81, 410, 474, 566
SsiI CCGC 1 cut(s) 561
SspMI CTAG 3 cut(s) 15, 378, 506
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 160, 229, 421
TaiI ACGT 1 cut(s) 156
TaqI TCGA 2 cut(s) 521, 538
TasI AATT 5 cut(s) 9, 81, 410, 474, 566
TatI WGTACW 4 cut(s) 169, 280, 372, 585
TfiI GAWTC 2 cut(s) 315, 469
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 2 cut(s) 232, 426
TseFI GTSAC 2 cut(s) 154, 421
TseI GCWGC 3 cut(s) 50, 53, 553
Tsp45I GTSAC 2 cut(s) 154, 421
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 2 cut(s) 232, 426
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 413
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 485
XspI CTAG 3 cut(s) 15, 378, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.