Rw7G001120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012333
Physical Location & Seq
Reverse (-)
927494 .. 928175
682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001120.1

Sequence Viewer

Length: 579 bp
ATGCTAGATCCAAGAAATGACCTGCTTCCTCCACCTTTATCTCCCACCAACTCCTCCGTCTCCTCCTCCGATCTCGACACTGAGTCTACGGGATCATTTTTTCATGATCGGAGCACCACCTTGGGAACTTTAATGGGAGTGAGTTTCCCGGCGATAACGTTCCGAGCGCCGAGCCAGAGCCGCCGCGAGCTCCAGTCCGCCGGCAGCAGCAGCGGCGCCGGCTCGAGGAAGGCGAAGAAGCCGAAGAAGAAGAGCGCCGCCGCCGCGGTTGCCGGAGTGACGGAGCGGCGGCGGAGGTGGTGGAGTCTCTGCCGAGACGACGGCACTAAGCCGGCGTCTCTTGGAGAGTTTCTGGAGGTGGAGAGGCGGTTCGGCGACGGCGCGTTTTACAATACGGCGGCGGAGCTTGAAGGGGTGATGGTGGCGCAGCAGCCGAGAAATGGAGGGCAGATGTTGTTTGCTGATGGGAGAGTTCTGCCGCCGTCGAATGTGGACGACGGAGCTTCTTCGTCGACGGCCGGCGTTCTGTGTAGATTTCCGGTTGCTCTCACTGCCATCTGTAGTGGCGGTTTAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.23

Weight (kDa)

9.21

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 286
AccI GTMKAC 2 cut(s) 86, 512
AccII CGCG 3 cut(s) 186, 266, 383
AclI AACGTT 1 cut(s) 158
AclWI GGATC 2 cut(s) 2, 100
AcoI YGGCCR 1 cut(s) 516
AcyI GRCGYC 2 cut(s) 216, 335
AfiI CCNNNNNNNGG 2 cut(s) 225, 440
AgsI TTSAA 1 cut(s) 410
AhdI GACNNNNNGTC 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 3 cut(s) 190, 406, 503
AluI AGCT 3 cut(s) 190, 406, 503
Alw21I GWGCWC 2 cut(s) 116, 192
Alw26I GTCTC 4 cut(s) 64, 309, 311, 342
AlwI GGATC 2 cut(s) 2, 100
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 5 cut(s) 204, 207, 210, 427, 430
AspLEI GCGC 5 cut(s) 169, 218, 257, 383, 427
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 223
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 116, 192
BbvI GCAGC 5 cut(s) 216, 219, 222, 439, 442
BccI CCATC 3 cut(s) 412, 458, 563
BceAI ACGGC 5 cut(s) 337, 394, 411, 466, 531
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 4 cut(s) 64, 309, 311, 342
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 559
BfoI RGCGCY 3 cut(s) 170, 219, 258
BfuAI ACCTGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 149
BpmI CTGGAG 2 cut(s) 176, 374
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 2 cut(s) 216, 335
BsaJI CCNNGG 2 cut(s) 120, 264
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 440
Bse118I RCCGGY 4 cut(s) 200, 218, 331, 518
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 120, 264
BseLI CCNNNNNNNGG 2 cut(s) 225, 440
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 3 cut(s) 43, 52, 55
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 5 cut(s) 216, 219, 222, 439, 442
Bsh1236I CGCG 3 cut(s) 186, 266, 383
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 1 cut(s) 518
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 116, 192
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 7 cut(s) 149, 201, 219, 273, 332, 519, 539
BslI CCNNNNNNNGG 2 cut(s) 225, 440
BsmAI GTCTC 4 cut(s) 64, 309, 311, 342
BsmBI CGTCTC 3 cut(s) 64, 309, 342
BsnI GGCC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 116, 192
Bsp143I GATC 4 cut(s) 7, 70, 92, 106
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 3 cut(s) 186, 266, 383
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 2, 100
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 286
BsrFI RCCGGY 4 cut(s) 200, 218, 331, 518
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 4 cut(s) 200, 218, 331, 518
BssECI CCNNGG 2 cut(s) 120, 264
BssMI GATC 4 cut(s) 7, 70, 92, 106
BssNI GRCGYC 2 cut(s) 216, 335
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 2 cut(s) 216, 335
BstC8I GCNNGC 5 cut(s) 188, 202, 220, 333, 520
BstDEI CTNAG 2 cut(s) 81, 327
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 3 cut(s) 186, 266, 383
BstH2I RGCGCY 3 cut(s) 170, 219, 258
BstHHI GCGC 5 cut(s) 169, 218, 257, 383, 427
BstKTI GATC 4 cut(s) 10, 73, 95, 109
BstMAI GTCTC 4 cut(s) 64, 309, 311, 342
BstMBI GATC 4 cut(s) 7, 70, 92, 106
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 7 cut(s) 180, 210, 213, 219, 263, 269, 551
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 559
BstUI CGCG 3 cut(s) 186, 266, 383
BstV1I GCAGC 5 cut(s) 216, 219, 222, 439, 442
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 516
BsuRI GGCC 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 2 cut(s) 78, 549
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 5 cut(s) 188, 202, 220, 333, 520
CciI TCATGA 1 cut(s) 103
CfoI GCGC 5 cut(s) 169, 218, 257, 383, 427
Cfr10I RCCGGY 4 cut(s) 200, 218, 331, 518
Cfr42I CCGCGG 1 cut(s) 267
CseI GACGC 1 cut(s) 324
CviAII CATG 1 cut(s) 104
DdeI CTNAG 2 cut(s) 81, 327
DinI GGCGCC 1 cut(s) 217
DpnI GATC 4 cut(s) 9, 72, 94, 108
DpnII GATC 4 cut(s) 7, 70, 92, 106
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 245
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 3 cut(s) 187, 307, 416
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 192
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 217
EheI GGCGCC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 3 cut(s) 64, 309, 342
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FatI CATG 1 cut(s) 103
FblI GTMKAC 2 cut(s) 86, 512
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 1 cut(s) 5
GlaI GCGC 5 cut(s) 168, 217, 256, 382, 426
GsuI CTGGAG 2 cut(s) 176, 374
HaeII RGCGCY 3 cut(s) 170, 219, 258
HaeIII GGCC 1 cut(s) 518
HapII CCGG 7 cut(s) 149, 201, 219, 273, 332, 519, 539
HgaI GACGC 1 cut(s) 324
HhaI GCGC 5 cut(s) 169, 218, 257, 383, 427
Hin1I GRCGYC 2 cut(s) 216, 335
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 5 cut(s) 167, 216, 255, 381, 425
HinP1I GCGC 5 cut(s) 167, 216, 255, 381, 425
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 2 cut(s) 83, 304
HpaII CCGG 7 cut(s) 149, 201, 219, 273, 332, 519, 539
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 3 cut(s) 87, 493, 513
Hpy188I TCNGA 3 cut(s) 70, 111, 164
Hpy188III TCNNGA 3 cut(s) 74, 104, 353
Hpy8I GTNNAC 3 cut(s) 87, 493, 513
Hpy99I CGWCG 6 cut(s) 323, 380, 487, 500, 514, 517
HpyAV CCTTC 2 cut(s) 223, 404
HpyCH4IV ACGT 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 7 cut(s) 180, 210, 213, 219, 263, 269, 551
HpyF3I CTNAG 2 cut(s) 81, 327
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 2 cut(s) 216, 335
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 5 cut(s) 167, 216, 255, 381, 425
KasI GGCGCC 1 cut(s) 215
KroI GCCGGC 4 cut(s) 200, 218, 331, 518
KroNI GCCGGC 4 cut(s) 202, 220, 333, 520
KspI CCGCGG 1 cut(s) 267
Kzo9I GATC 4 cut(s) 7, 70, 92, 106
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 5 cut(s) 111, 195, 283, 403, 500
Lsp1109I GCAGC 5 cut(s) 216, 219, 222, 439, 442
MaeI CTAG 1 cut(s) 5
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 277
MalI GATC 4 cut(s) 9, 72, 94, 108
MbiI CCGCTC 1 cut(s) 286
MboI GATC 4 cut(s) 7, 70, 92, 106
MboII GAAGA 5 cut(s) 247, 256, 259, 262, 498
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 116, 192
Mly113I GGCGCC 1 cut(s) 216
MlyI GAGTC 2 cut(s) 92, 313
MnlI CCTC 9 cut(s) 39, 64, 73, 76, 219, 288, 349, 357, 437
MroNI GCCGGC 4 cut(s) 200, 218, 331, 518
MseI TTAA 1 cut(s) 131
MspA1I CMGCKG 2 cut(s) 213, 266
MspI CCGG 7 cut(s) 149, 201, 219, 273, 332, 519, 539
MspR9I CCNGG 1 cut(s) 149
MvnI CGCG 3 cut(s) 186, 266, 383
MwoI GCNNNNNNNGC 7 cut(s) 180, 210, 213, 219, 263, 269, 551
NaeI GCCGGC 4 cut(s) 202, 220, 333, 520
NarI GGCGCC 1 cut(s) 216
NciI CCSGG 1 cut(s) 149
NdeII GATC 4 cut(s) 7, 70, 92, 106
NgoMIV GCCGGC 4 cut(s) 200, 218, 331, 518
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 217
NmeAIII GCCGAG 3 cut(s) 195, 338, 459
NmuCI GTSAC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 223
PagI TCATGA 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdiI GCCGGC 4 cut(s) 202, 220, 333, 520
PleI GAGTC 2 cut(s) 91, 312
PluTI GGCGCC 1 cut(s) 219
PpsI GAGTC 2 cut(s) 91, 312
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 217
PspXI VCTCGAGB 1 cut(s) 223
PsuI RGATCY 1 cut(s) 7
SacI GAGCTC 1 cut(s) 192
SacII CCGCGG 1 cut(s) 267
SalI GTCGAC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 131
Sau3AI GATC 4 cut(s) 7, 70, 92, 106
SchI GAGTC 2 cut(s) 92, 313
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 116, 192
SetI ASST 9 cut(s) 24, 37, 122, 161, 192, 299, 360, 408, 505
SfcI CTRYAG 1 cut(s) 559
SfoI GGCGCC 1 cut(s) 217
Sfr274I CTCGAG 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 267
SgrBI CCGCGG 1 cut(s) 267
SgrDI CGTCGACG 1 cut(s) 511
SlaI CTCGAG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SspDI GGCGCC 1 cut(s) 215
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 120
TaiI ACGT 1 cut(s) 161
TaqI TCGA 4 cut(s) 75, 224, 485, 512
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 2 cut(s) 85, 556
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 5 cut(s) 204, 207, 210, 427, 430
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 3 cut(s) 46, 296, 513
TspRI CASTG 2 cut(s) 85, 556
XhoI CTCGAG 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 86, 512
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.