FvH4_5g17460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012333
Physical Location & Seq
Forward (+)
10000355 .. 10001552
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17460.t1

Sequence Viewer

Length: 579 bp
ATGCTAGATCCAAGAAACGACTTGCTTCCTCCTCCTTCATCTCCCTCCAACTCCTCCGTCTCCTCCTCCGATCTCGACACCGAGTCTACAGGCTCGTTCTTCCATGATCGGAGCACCACCTTGGGAACCCTCATGGGAGTGAGTTTCCCGGCGATAACATTCCGAGCGCCGAGCCAGAGCCGCCGGGAGCTCCAGTCCGGCGGCGGCACCAGCGGCAGCGGCTCGAGGAAGACGAAGAAGCCGAAGAAGAAGAGCGCCGCGGCGGCGGTTGCCGGAGTGACGGAGAGGCGGCGGAGGTGGTGGAGGCTCTGCCGAGACGACGGGACCAAGCCGGCGTCGCTGGGGGAGTTTCTGGAAGTGGAGAGGCGGTTCGGCGACGCCGCGTTTTACAATACGGCGGCGGAGCTTGAAGGGGTGATGGTGCCGCAGCAGCCGAGGAATGGAGGACAAATGTTGTTTGCTGACGGGAGGGTTCTGCCGCCGTCGAATGTGGACGACGGGGCTTCTTCGTCGACGGCCGGCGGGCTTTGTAGATTTCCGGTTTCTCTCACTGCCATCTGTAGTGGCGGTTTAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.28

Weight (kDa)

9.45

Isoelectric Point (pI)

68.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 421
AccI GTMKAC 2 cut(s) 86, 512
AccII CGCG 2 cut(s) 260, 383
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 516
AcyI GRCGYC 2 cut(s) 335, 378
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 1 cut(s) 410
AhdI GACNNNNNGTC 1 cut(s) 82
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 2 cut(s) 190, 406
AluI AGCT 2 cut(s) 190, 406
Alw21I GWGCWC 2 cut(s) 116, 192
Alw26I GTCTC 2 cut(s) 64, 309
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 223
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 3 cut(s) 216, 427, 430
AspLEI GCGC 2 cut(s) 169, 257
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 2 cut(s) 149, 185
AsuHPI GGTGA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 223
AvaII GGWCC 1 cut(s) 324
BanI GGYRCC 2 cut(s) 206, 421
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 2 cut(s) 116, 192
BbvI GCAGC 3 cut(s) 228, 439, 442
BccI CCATC 2 cut(s) 412, 563
BceAI ACGGC 3 cut(s) 411, 466, 531
BcnI CCSGG 2 cut(s) 149, 185
BcoDI GTCTC 2 cut(s) 64, 309
BfaI CTAG 1 cut(s) 5
BfmI CTRYAG 2 cut(s) 87, 559
BfoI RGCGCY 2 cut(s) 170, 258
BglI GCCNNNNNGGC 1 cut(s) 263
Bme1390I CCNGG 2 cut(s) 149, 185
Bme18I GGWCC 1 cut(s) 324
BmeRI GACNNNNNGTC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 4 cut(s) 127, 208, 325, 423
BmrFI CCNGG 2 cut(s) 149, 185
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 149, 185
BsaHI GRCGYC 2 cut(s) 335, 378
BsaJI CCNNGG 3 cut(s) 120, 258, 434
BsaWI WCCGGW 1 cut(s) 538
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 353, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse118I RCCGGY 2 cut(s) 331, 518
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 3 cut(s) 120, 258, 434
BseLI CCNNNNNNNGG 1 cut(s) 440
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 4 cut(s) 21, 43, 52, 55
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 3 cut(s) 228, 439, 442
BseYI CCCAGC 1 cut(s) 340
Bsh1236I CGCG 2 cut(s) 260, 383
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 1 cut(s) 518
BshNI GGYRCC 2 cut(s) 206, 421
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 116, 192
BsiHKCI CYCGRG 1 cut(s) 223
BsiSI CCGG 7 cut(s) 149, 184, 198, 273, 332, 519, 539
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 2 cut(s) 64, 309
BsmBI CGTCTC 2 cut(s) 64, 309
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 116, 192
Bsp143I GATC 3 cut(s) 7, 70, 106
BspANI GGCC 1 cut(s) 518
BspFNI CGCG 2 cut(s) 260, 383
BspLI GGNNCC 4 cut(s) 127, 208, 325, 423
BspPI GGATC 1 cut(s) 2
BspQI GCTCTTC 1 cut(s) 245
BspT107I GGYRCC 2 cut(s) 206, 421
BsrFI RCCGGY 2 cut(s) 331, 518
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 2 cut(s) 331, 518
BssECI CCNNGG 3 cut(s) 120, 258, 434
BssMI GATC 3 cut(s) 7, 70, 106
BssNI GRCGYC 2 cut(s) 335, 378
BssT1I CCWWGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 245
BstACI GRCGYC 2 cut(s) 335, 378
BstC8I GCNNGC 3 cut(s) 333, 520, 524
BstDSI CCRYGG 1 cut(s) 258
BstFNI CGCG 2 cut(s) 260, 383
BstH2I RGCGCY 2 cut(s) 170, 258
BstHHI GCGC 2 cut(s) 169, 257
BstKTI GATC 3 cut(s) 10, 73, 109
BstMAI GTCTC 2 cut(s) 64, 309
BstMBI GATC 3 cut(s) 7, 70, 106
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 8 cut(s) 180, 210, 213, 219, 263, 269, 337, 430
BstSCI CCNGG 2 cut(s) 147, 183
BstSFI CTRYAG 2 cut(s) 87, 559
BstUI CGCG 2 cut(s) 260, 383
BstV1I GCAGC 3 cut(s) 228, 439, 442
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 516
BsuRI GGCC 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 258
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 3 cut(s) 333, 520, 524
CfoI GCGC 2 cut(s) 169, 257
Cfr10I RCCGGY 2 cut(s) 331, 518
Cfr13I GGNCC 1 cut(s) 324
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 2 cut(s) 324, 386
CviAII CATG 2 cut(s) 104, 133
DpnI GATC 3 cut(s) 9, 72, 108
DpnII GATC 3 cut(s) 7, 70, 106
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 245
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 245
EciI GGCGGA 2 cut(s) 307, 416
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 324
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 2 cut(s) 64, 309
FaeI CATG 2 cut(s) 107, 136
FaiI YATR 2 cut(s) 105, 134
FaqI GGGAC 1 cut(s) 337
FatI CATG 2 cut(s) 103, 132
FauI CCCGC 1 cut(s) 515
FblI GTMKAC 2 cut(s) 86, 512
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 1 cut(s) 5
GlaI GCGC 2 cut(s) 168, 256
GsaI CCCAGC 1 cut(s) 344
GsuI CTGGAG 1 cut(s) 176
HaeII RGCGCY 2 cut(s) 170, 258
HaeIII GGCC 1 cut(s) 518
HapII CCGG 7 cut(s) 149, 184, 198, 273, 332, 519, 539
HgaI GACGC 2 cut(s) 324, 386
HhaI GCGC 2 cut(s) 169, 257
Hin1I GRCGYC 2 cut(s) 335, 378
Hin1II CATG 2 cut(s) 107, 136
Hin6I GCGC 2 cut(s) 167, 255
HinP1I GCGC 2 cut(s) 167, 255
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 1 cut(s) 83
HpaII CCGG 7 cut(s) 149, 184, 198, 273, 332, 519, 539
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 3 cut(s) 87, 493, 513
Hpy188I TCNGA 3 cut(s) 70, 111, 164
Hpy188III TCNNGA 2 cut(s) 74, 353
Hpy8I GTNNAC 3 cut(s) 87, 493, 513
Hpy99I CGWCG 7 cut(s) 323, 340, 380, 487, 500, 514, 517
HpyAV CCTTC 2 cut(s) 45, 404
HpyF10VI GCNNNNNNNGC 8 cut(s) 180, 210, 213, 219, 263, 269, 337, 430
Hsp92I GRCGYC 2 cut(s) 335, 378
Hsp92II CATG 2 cut(s) 107, 136
HspAI GCGC 2 cut(s) 167, 255
KroI GCCGGC 2 cut(s) 331, 518
KroNI GCCGGC 2 cut(s) 333, 520
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 3 cut(s) 7, 70, 106
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 4 cut(s) 111, 187, 195, 403
Lsp1109I GCAGC 3 cut(s) 228, 439, 442
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 9, 72, 108
MboI GATC 3 cut(s) 7, 70, 106
MboII GAAGA 7 cut(s) 91, 241, 247, 256, 259, 262, 498
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 116, 192
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 72
MroNI GCCGGC 2 cut(s) 331, 518
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 3 cut(s) 213, 219, 260
MspI CCGG 7 cut(s) 149, 184, 198, 273, 332, 519, 539
MspR9I CCNGG 2 cut(s) 149, 185
MvnI CGCG 2 cut(s) 260, 383
MwoI GCNNNNNNNGC 8 cut(s) 180, 210, 213, 219, 263, 269, 337, 430
NaeI GCCGGC 2 cut(s) 333, 520
NciI CCSGG 2 cut(s) 149, 185
NdeII GATC 3 cut(s) 7, 70, 106
NgoMIV GCCGGC 2 cut(s) 331, 518
NlaIII CATG 2 cut(s) 107, 136
NlaIV GGNNCC 4 cut(s) 127, 208, 325, 423
NmeAIII GCCGAG 3 cut(s) 195, 338, 459
NmuCI GTSAC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 230, 239
PdiI GCCGGC 2 cut(s) 333, 520
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 340
PspN4I GGNNCC 4 cut(s) 127, 208, 325, 423
PspPI GGNCC 1 cut(s) 324
PspXI VCTCGAGB 1 cut(s) 223
PsuI RGATCY 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 137
SacI GAGCTC 1 cut(s) 192
SacII CCGCGG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 245
Sau3AI GATC 3 cut(s) 7, 70, 106
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 149, 185
SduI GDGCHC 2 cut(s) 116, 192
SetI ASST 4 cut(s) 122, 192, 299, 408
SfcI CTRYAG 2 cut(s) 87, 559
Sfr274I CTCGAG 1 cut(s) 223
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SgrDI CGTCGACG 1 cut(s) 511
SinI GGWCC 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
SspMI CTAG 1 cut(s) 5
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 147, 183
StyI CCWWGG 1 cut(s) 120
TaqI TCGA 4 cut(s) 75, 224, 485, 512
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 3 cut(s) 216, 427, 430
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 2 cut(s) 46, 296
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 324
XhoI CTCGAG 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 86, 512
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.