Rh7CG013700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012333
Physical Location & Seq
Reverse (-)
1034168 .. 1035465
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG013700.1

Sequence Viewer

Length: 447 bp
ATGGGAGTGAGTTTCCCGGCGATAACGTTCCGAGCGCCGAGCCAGAGCCGCCGCGAGCTCCAGTCCGCCGGCAGCACCAGCGGCGGCGGCTCGAGGAAGGCGAAGAAGCCGAAGAAGAAGAGCGCCGCCGCCGCGGTTGCCGGAGTGACGGAGCGGCGGCGGAGGTGGTGGAGTCTCTGCCGAGACGACGGCACTAAGCCGGCGTCTCTTGGAGAGTTTCTGGAGGTGGAGAGGCGGTTCGGCGACGGCGCGTTTTACAATACGGCGGCGGAGCTTGAAGGGGTGATGGTGGCGCAGCAGCCGAGAAATGGAGGGCAGATGTTGTTTGCTGATGGGAGAGTTCTGCCGCCGTCGAATGTGGACGACGGAGCTTCTTCGTCGACGGCCGGCGTTCTGTGTAGATTTCCGGTTGCTCTCACTGCCATCTGTAGTGGCGGTTTAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

15.54

Weight (kDa)

10.02

Isoelectric Point (pI)

64.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 380
AccII CGCG 3 cut(s) 54, 134, 251
AclI AACGTT 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 1 cut(s) 278
AloI GAACNNNNNNTCC 2 cut(s) 221, 253
AluBI AGCT 3 cut(s) 58, 274, 371
AluI AGCT 3 cut(s) 58, 274, 371
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 177, 179, 210
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 72, 295, 298
AspLEI GCGC 4 cut(s) 37, 125, 251, 295
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 84, 307, 310
BccI CCATC 3 cut(s) 280, 326, 431
BceAI ACGGC 5 cut(s) 205, 262, 279, 334, 399
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 3 cut(s) 177, 179, 210
BfmI CTRYAG 1 cut(s) 427
BfoI RGCGCY 2 cut(s) 38, 126
Bme1390I CCNGG 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 17
BpmI CTGGAG 2 cut(s) 44, 242
BpuMI CCSGG 1 cut(s) 17
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 3 cut(s) 68, 199, 386
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 61
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 84, 307, 310
Bsh1236I CGCG 3 cut(s) 54, 134, 251
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 6 cut(s) 17, 69, 141, 200, 387, 407
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 3 cut(s) 177, 179, 210
BsmBI CGTCTC 2 cut(s) 177, 210
BsnI GGCC 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 60
BspANI GGCC 1 cut(s) 386
BspFNI CGCG 3 cut(s) 54, 134, 251
BspQI GCTCTTC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 154
BsrFI RCCGGY 3 cut(s) 68, 199, 386
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 3 cut(s) 68, 199, 386
BssECI CCNNGG 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 113
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 4 cut(s) 56, 70, 201, 388
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 3 cut(s) 54, 134, 251
BstH2I RGCGCY 2 cut(s) 38, 126
BstHHI GCGC 4 cut(s) 37, 125, 251, 295
BstMAI GTCTC 3 cut(s) 177, 179, 210
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 7 cut(s) 48, 78, 81, 87, 131, 137, 419
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 3 cut(s) 54, 134, 251
BstV1I GCAGC 3 cut(s) 84, 307, 310
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 4 cut(s) 56, 70, 201, 388
CfoI GCGC 4 cut(s) 37, 125, 251, 295
Cfr10I RCCGGY 3 cut(s) 68, 199, 386
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 384
EagI CGGCCG 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 3 cut(s) 55, 175, 284
Ecl136II GAGCTC 1 cut(s) 58
EclXI CGGCCG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 384
Eco53kI GAGCTC 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 177, 210
FblI GTMKAC 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 60
GlaI GCGC 4 cut(s) 36, 124, 250, 294
GsuI CTGGAG 2 cut(s) 44, 242
HaeII RGCGCY 2 cut(s) 38, 126
HaeIII GGCC 1 cut(s) 386
HapII CCGG 6 cut(s) 17, 69, 141, 200, 387, 407
HgaI GACGC 1 cut(s) 192
HhaI GCGC 4 cut(s) 37, 125, 251, 295
Hin1I GRCGYC 1 cut(s) 203
Hin6I GCGC 4 cut(s) 35, 123, 249, 293
HinP1I GCGC 4 cut(s) 35, 123, 249, 293
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 1 cut(s) 172
HpaII CCGG 6 cut(s) 17, 69, 141, 200, 387, 407
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 361, 381
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 361, 381
Hpy99I CGWCG 6 cut(s) 191, 248, 355, 368, 382, 385
HpyAV CCTTC 2 cut(s) 91, 272
HpyCH4IV ACGT 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 78, 81, 87, 131, 137, 419
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 203
HspAI GCGC 4 cut(s) 35, 123, 249, 293
KroI GCCGGC 3 cut(s) 68, 199, 386
KroNI GCCGGC 3 cut(s) 70, 201, 388
KspI CCGCGG 1 cut(s) 135
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 4 cut(s) 63, 151, 271, 368
Lsp1109I GCAGC 3 cut(s) 84, 307, 310
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 145
MbiI CCGCTC 1 cut(s) 154
MboII GAAGA 5 cut(s) 115, 124, 127, 130, 366
MhlI GDGCHC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 5 cut(s) 87, 156, 217, 225, 305
MroNI GCCGGC 3 cut(s) 68, 199, 386
MspA1I CMGCKG 2 cut(s) 81, 134
MspI CCGG 6 cut(s) 17, 69, 141, 200, 387, 407
MspR9I CCNGG 1 cut(s) 17
MvnI CGCG 3 cut(s) 54, 134, 251
MwoI GCNNNNNNNGC 7 cut(s) 48, 78, 81, 87, 131, 137, 419
NaeI GCCGGC 3 cut(s) 70, 201, 388
NciI CCSGG 1 cut(s) 17
NgoMIV GCCGGC 3 cut(s) 68, 199, 386
NmeAIII GCCGAG 3 cut(s) 63, 206, 327
NmuCI GTSAC 1 cut(s) 145
PaeR7I CTCGAG 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PdiI GCCGGC 3 cut(s) 70, 201, 388
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 26
PspXI VCTCGAGB 1 cut(s) 91
SacI GAGCTC 1 cut(s) 60
SacII CCGCGG 1 cut(s) 135
SalI GTCGAC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 113
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 29, 60, 167, 228, 276, 373
SfcI CTRYAG 1 cut(s) 427
Sfr274I CTCGAG 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SgrDI CGTCGACG 1 cut(s) 379
SlaI CTCGAG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 15
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 92, 353, 380
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 72, 295, 298
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 2 cut(s) 164, 381
TspRI CASTG 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.