Prupe.5G234500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012333
Physical Location & Seq
Forward (+)
17800215 .. 17801314
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G234500.1

Sequence Viewer

Length: 603 bp
ATGCTAGATCCAAGAAATGATCTGCTACCTCCACCCTCATCCCCCACCAACTCCTCCATTTCTTCTTCCGATCTCGACACCGAGTCTACAGGCTCATTCTTTCACGATCGAAGCACGACCTTAGGAACCCTAATGGGAGTGAGCTTTCCAGCCATCACGTTCAGAGCCCCGAGCCAACAGCGCCGAGACCCCCAAGCCAACAGCAACAACAACAACAACATGGCCAGTACTAGCGGAAGCGGCTCCAGGAAGACCAAGAAGCCCAAGAAGAAAAACGCCGCTGCTTCGTCAGCCGTGGGTGTGGTGGCGGAACGGCGGCGTAGGTGGTGGCGCCTCTGCCGAGACGACTGCACGAAGCCAGCTTCGCTCGGCGAGTTTCTTGAGGTGGAGAGGAGATTTGGAGACAATGCGTTTTATAACACGGCTGCGGAGCTTGAAGGGGTCATGGTGGGGCAGCCCAGAAATGGACGGCTACTGTTTGCCGATGGGAGGGTGCTTCCACCGTCCAATGTTGATGACCGGATTGCCACTTCATCCACGGCTGGAGTTCTCTCTAGATTCCCGGTTTCGATCACTGCCATCTGTAGTGGCGGTGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.51

Weight (kDa)

9.84

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17950 AT3G17950 AT3G17950
fragaria_vesca FvH4_5g17460
malus_domestica MD01G1007300.v1.1 MD06G1228000.v1.1 MD14G1237200.v1.1
prunus_persica Prupe.5G234500_v2.0.a1
pyrus_communis pycom06g20440 pycom14g19820
rosa_chinensis RchiOBHm_Chr7g0178231
rosa_multiflora Rmu_sc0007855.1_g000003
rosa_roxburghii Rroxscaffold_3G00275060
rosa_rugosa Rorug06G0415200
rosa_samantha Rh7AG014300 Rh7BG013800 Rh7CG013700 Rh7DG014000
rosa_wichuraiana Rw7G001120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 86
AciI CCGC 7 cut(s) 234, 240, 279, 308, 316, 428, 591
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 464, 489
AgsI TTSAA 1 cut(s) 437
AhdI GACNNNNNGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 3 cut(s) 144, 362, 433
AluI AGCT 3 cut(s) 144, 362, 433
Alw26I GTCTC 3 cut(s) 180, 336, 396
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 281, 425, 454
AspLEI GCGC 2 cut(s) 183, 333
AsuC2I CCSGG 1 cut(s) 563
AvaI CYCGRG 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 121
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 3 cut(s) 268, 412, 466
BccI CCATC 3 cut(s) 161, 479, 587
BceAI ACGGC 5 cut(s) 278, 329, 438, 485, 555
BcgI CGANNNNNNTGC 2 cut(s) 330, 364
BciT130I CCWGG 1 cut(s) 247
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 3 cut(s) 180, 336, 396
BfaI CTAG 3 cut(s) 5, 231, 555
BfmI CTRYAG 2 cut(s) 87, 583
BfoI RGCGCY 2 cut(s) 184, 334
BisI GCNGC 6 cut(s) 241, 279, 282, 317, 426, 455
BlsI GCNGC 6 cut(s) 242, 280, 283, 318, 427, 456
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 2 cut(s) 247, 563
BmeRI GACNNNNNGTC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 169
BmiI GGNNCC 3 cut(s) 127, 244, 332
BmrFI CCNGG 2 cut(s) 247, 563
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 2 cut(s) 229, 564
BpuEI CTTGAG 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 563
BsaHI GRCGYC 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 294, 537
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 489
Bse1I ACTGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 294, 537
BseGI GGATG 2 cut(s) 38, 533
BseLI CCNNNNNNNGG 2 cut(s) 464, 489
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 2 cut(s) 43, 406
BseXI GCAGC 3 cut(s) 268, 412, 466
BsgI GTGCAG 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 330
BsiEI CGRYCG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 2 cut(s) 520, 563
BslI CCNNNNNNNGG 2 cut(s) 464, 489
BsmAI GTCTC 3 cut(s) 180, 336, 396
BsmBI CGTCTC 1 cut(s) 336
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 5 cut(s) 7, 19, 70, 106, 570
BspACI CCGC 7 cut(s) 234, 240, 279, 308, 316, 428, 591
BspANI GGCC 1 cut(s) 224
BspLI GGNNCC 3 cut(s) 127, 244, 332
BspPI GGATC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 2 cut(s) 294, 537
BssMI GATC 5 cut(s) 7, 19, 70, 106, 570
BssNI GRCGYC 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 477, 504
BstACI GRCGYC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 121
BstDSI CCRYGG 2 cut(s) 294, 537
BstF5I GGATG 2 cut(s) 38, 533
BstH2I RGCGCY 2 cut(s) 184, 334
BstHHI GCGC 2 cut(s) 183, 333
BstKTI GATC 5 cut(s) 10, 22, 73, 109, 573
BstMAI GTCTC 3 cut(s) 180, 336, 396
BstMBI GATC 5 cut(s) 7, 19, 70, 106, 570
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 180, 240, 290, 364
BstNI CCWGG 1 cut(s) 247
BstSCI CCNGG 2 cut(s) 245, 561
BstSFI CTRYAG 2 cut(s) 87, 583
BstV1I GCAGC 3 cut(s) 268, 412, 466
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 121
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 2 cut(s) 294, 537
BtsCI GGATG 2 cut(s) 38, 533
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 183, 333
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 220, 445, 600
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 121
DinI GGCGCC 1 cut(s) 332
DpnI GATC 5 cut(s) 9, 21, 72, 108, 572
DpnII GATC 5 cut(s) 7, 19, 70, 106, 570
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 222
Eam1105I GACNNNNNGTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 3 cut(s) 223, 448, 603
FaiI YATR 4 cut(s) 221, 417, 446, 601
FatI CATG 3 cut(s) 219, 444, 599
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 6 cut(s) 241, 279, 282, 317, 426, 455
FokI GGATG 2 cut(s) 25, 520
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 6 cut(s) 241, 279, 282, 317, 426, 455
FspBI CTAG 3 cut(s) 5, 231, 555
GlaI GCGC 2 cut(s) 182, 332
GluI GCNGC 6 cut(s) 241, 279, 282, 317, 426, 455
GsuI CTGGAG 2 cut(s) 229, 564
HaeII RGCGCY 2 cut(s) 184, 334
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 520, 563
HhaI GCGC 2 cut(s) 183, 333
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 3 cut(s) 223, 448, 603
Hin6I GCGC 2 cut(s) 181, 331
HinP1I GCGC 2 cut(s) 181, 331
HinfI GANTC 2 cut(s) 83, 558
HpaII CCGG 2 cut(s) 520, 563
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 70, 164
Hpy188III TCNNGA 4 cut(s) 74, 104, 380, 555
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 2 cut(s) 477, 504
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 351
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 240, 290, 364
HpyF3I CTNAG 1 cut(s) 121
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 3 cut(s) 223, 448, 603
HspAI GCGC 2 cut(s) 181, 331
KasI GGCGCC 1 cut(s) 330
Kzo9I GATC 5 cut(s) 7, 19, 70, 106, 570
LmnI GCTCC 2 cut(s) 248, 430
Lsp1109I GCAGC 3 cut(s) 268, 412, 466
MaeI CTAG 3 cut(s) 5, 231, 555
MaeII ACGT 1 cut(s) 158
MalI GATC 5 cut(s) 9, 21, 72, 108, 572
MboI GATC 5 cut(s) 7, 19, 70, 106, 570
MboII GAAGA 4 cut(s) 54, 57, 262, 280
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 169
MlsI TGGCCA 1 cut(s) 224
MluNI TGGCCA 1 cut(s) 224
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 39, 46, 64, 344, 376, 384, 483
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 520, 563
MspR9I CCNGG 2 cut(s) 247, 563
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 4 cut(s) 180, 240, 290, 364
NarI GGCGCC 1 cut(s) 331
NciI CCSGG 1 cut(s) 563
NdeII GATC 5 cut(s) 7, 19, 70, 106, 570
NlaIII CATG 3 cut(s) 223, 448, 603
NlaIV GGNNCC 3 cut(s) 127, 244, 332
NmeAIII GCCGAG 3 cut(s) 209, 348, 365
PfeI GAWTC 1 cut(s) 558
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 6 cut(s) 242, 280, 283, 318, 427, 456
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 1 cut(s) 91
PluTI GGCGCC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 91
PsiI TTATAA 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 127, 244, 332
PsuI RGATCY 1 cut(s) 7
PvuI CGATCG 1 cut(s) 109
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SatI GCNGC 6 cut(s) 241, 279, 282, 317, 426, 455
Sau3AI GATC 5 cut(s) 7, 19, 70, 106, 570
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 247, 563
SduI GDGCHC 1 cut(s) 169
SetI ASST 8 cut(s) 31, 122, 146, 161, 326, 364, 387, 435
SfcI CTRYAG 2 cut(s) 87, 583
SfoI GGCGCC 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SsiI CCGC 7 cut(s) 234, 240, 279, 308, 316, 428, 591
SspDI GGCGCC 1 cut(s) 330
SspMI CTAG 3 cut(s) 5, 231, 555
StyD4I CCNGG 2 cut(s) 245, 561
TaaI ACNGT 2 cut(s) 477, 504
TaiI ACGT 1 cut(s) 161
TaqI TCGA 3 cut(s) 75, 109, 569
TatI WGTACW 1 cut(s) 227
TauI GCSGC 3 cut(s) 243, 281, 319
TfiI GAWTC 1 cut(s) 558
TscAI CASTG 1 cut(s) 580
TseI GCWGC 3 cut(s) 281, 425, 454
TspDTI ATGAA 1 cut(s) 522
TspRI CASTG 1 cut(s) 580
XbaI TCTAGA 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 3 cut(s) 5, 231, 555
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.