AT3G18500

Carbon catabolite repressor protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012263
Physical Location & Seq
Forward (+)
6352447 .. 6355463
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18500.1

Sequence Viewer

Length: 1281 bp
ATGCGTTGTGTGAATCGCGTTGATTGTTCTTGGTCACGGCCAAGCGAAGCTTACCGTATCTTACCCTCCGGTGGTCACCTTTCATCTGGATTCCATCAATGTCCTTTATCGTCTCTATCTTTCCGTTCCTCTTTCGTGTGTTGCTCCTCCTCCACATCTGGACCGTCCGATTCAAATCCCGAATCATCTTCAAATCGCTCTTACAGCCGTAGATGGCAGAATCCTCTTCCCCGGCGTCAACATCCCGATCAAATACCGTCTTCTCAGATTGCTCGTGATTGGATCGATTCAGATACAACTCCAGTTTCTCAAGCTTTAGAGAGATTCACTGTAGTGTCGTACAACATATTGGGAGATGGAAATTCATCATATCACAGAGAGTTGTACTCCAATGTGTCTGTTCCTTACCTCAAGTGGGGCTACCGCAAAAGGTTGATATGCGAAGAACTCATTCGTCTCAATCCAGACATAATCTCTATGCAGCGGCGAACTGGAGATAACGTCGATGGTTGCGCAATGTTTTGGAAGGCTGACAGGTTTGGAGTTTTGGAGAGGGAAAACATTGAGTTTAGCCAGTTTGGTATGCGGGATAATGTTGCACAGCTTGCTGTTCTTGAGCTCCGGAAGTCTAATAAGTCAAGAAAGATACTGCTGGGTAACATTCACGTGCTTTATAATCCAAATCAAGGAGATGTGAAGCTGGGTCAGGTCCGTTCACTCTGCTCAAAGGCTCACTTGCTCTCTAAGAAATGGGGTGACATTCCCATTGTTCTATGCGGAGATTTCAATAGCACTCCCAAGAGTCCATTGTACAACTTCTTGGCGTCCTCTGAGCTGAATGTCATGGAACATGACAAAAAAGAGCTGTCCGGCCAGAAAAATTGTCGTCCTACCAAAGTTCTTGAAACTGGTAGCAAATCCAGTAATACAATAACTTTCAGTTTTTGTAGCTCTTGGACAAAAGAAGAGATCCGTGTCGCAACCGGGCAAGAGAACTCGTACTGGGCTGCGCATCCTCTGAAACTCAATAGCTCATACGCCTCAGTTAAGGGCTCAGCAAATACCAGGGACTCTGTTGGTGAACCTCTAGCAACCTCATATCACTCGAAATTTCTCGGAACGGTTGATTATCTCTGGTACTCTGATGGTCTTTTACCTGCAAGAGTTCTTGACACACTTCCTATTGATGTTCTATGCAAAACCAAAGGCCTTCCTTGTCAAGAATTGGGAAGCGATCACTTGGCTCTTGTTTCTGAATTTGTCTTTGAACCGGACGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

426

Amino Acids

47.76

Weight (kDa)

8.6

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 164 - 413 1.7e-06 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012263)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18500 AT3G18500 AT3G18500 AT3G18500
fragaria_vesca FvH4_5g12590
malus_domestica MD06G1212300.v1.1
prunus_persica Prupe.5G218400_v2.0.a1
pyrus_communis pycom06g18950
rosa_chinensis RchiOBHm_Chr7g0184741
rosa_laevigata RLG00000004954
rosa_multiflora Rmu_co8486587.1_g000001 Rmu_ssc0000289.1_g000017
rosa_roxburghii Rroxscaffold_3G00269380
rosa_rugosa Rorug06G0464900
rosa_samantha Rh7AG078000 Rh7BG069300 Rh7CG070100 Rh7DG069500
rosa_wichuraiana Rw7G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
Acc16I TGCGCA 2 cut(s) 514, 1011
Acc36I ACCTGC 1 cut(s) 1165
AccII CGCG 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 621
AciI CCGC 4 cut(s) 424, 484, 586, 777
AclWI GGATC 2 cut(s) 290, 964
AcoI YGGCCR 2 cut(s) 38, 871
AcsI RAATTY 3 cut(s) 361, 1109, 1256
AcvI CACGTG 1 cut(s) 667
AcyI GRCGYC 2 cut(s) 235, 824
AfaI GTAC 5 cut(s) 341, 386, 812, 1001, 1139
AfiI CCNNNNNNNGG 3 cut(s) 71, 415, 686
AgsI TTSAA 5 cut(s) 174, 192, 787, 905, 1268
AjnI CCWGG 1 cut(s) 1064
AleI CACNNNNGTG 1 cut(s) 332
AluBI AGCT 9 cut(s) 50, 314, 604, 619, 700, 835, 865, 951, 1032
AluI AGCT 9 cut(s) 50, 314, 604, 619, 700, 835, 865, 951, 1032
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 2 cut(s) 117, 461
AlwI GGATC 2 cut(s) 290, 964
Aor13HI TCCGGA 1 cut(s) 621
AoxI GGCC 3 cut(s) 38, 871, 1207
ApeKI GCWGC 2 cut(s) 481, 1007
ApoI RAATTY 3 cut(s) 361, 1109, 1256
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 2 cut(s) 515, 1012
AspS9I GGNCC 2 cut(s) 161, 709
AsuC2I CCSGG 2 cut(s) 232, 985
AsuHPI GGTGA 3 cut(s) 68, 767, 1091
AvaII GGWCC 2 cut(s) 161, 709
BanII GRGCYC 2 cut(s) 621, 1055
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 493, 994
BccI CCATC 5 cut(s) 102, 207, 350, 500, 1139
BceAI ACGGC 2 cut(s) 53, 192
BciT130I CCWGG 1 cut(s) 1066
BcnI CCSGG 2 cut(s) 232, 985
BcoDI GTCTC 2 cut(s) 117, 461
BfaI CTAG 1 cut(s) 1088
BfmI CTRYAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 1165
BisI GCNGC 3 cut(s) 482, 485, 1008
BlpI GCTNAGC 1 cut(s) 1054
BlsI GCNGC 3 cut(s) 483, 486, 1009
Bme1390I CCNGG 3 cut(s) 232, 985, 1066
Bme18I GGWCC 2 cut(s) 161, 709
BmgT120I GGNCC 2 cut(s) 161, 709
BmrFI CCNGG 3 cut(s) 232, 985, 1066
BmrI ACTGGG 1 cut(s) 1012
BmsI GCATC 1 cut(s) 1021
BmuI ACTGGG 1 cut(s) 1012
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 2 cut(s) 285, 513
Bpu1102I GCTNAGC 1 cut(s) 1054
BpuEI CTTGAG 3 cut(s) 294, 395, 635
BpuMI CCSGG 2 cut(s) 232, 985
Bsa29I ATCGAT 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 174
BsaHI GRCGYC 2 cut(s) 235, 824
BsaJI CCNNGG 2 cut(s) 230, 1065
BsaWI WCCGGW 3 cut(s) 68, 621, 1270
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 415, 686
Bse1I ACTGG 6 cut(s) 302, 496, 574, 913, 921, 1007
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 621
BseBI CCWGG 1 cut(s) 1066
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 230, 1065
BseGI GGATG 2 cut(s) 241, 1012
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 71, 415, 686
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 4 cut(s) 278, 822, 1056, 1068
BseNI ACTGG 6 cut(s) 302, 496, 574, 913, 921, 1007
BseRI GAGGAG 2 cut(s) 136, 139
BseXI GCAGC 2 cut(s) 493, 994
BseYI CCCAGC 2 cut(s) 652, 700
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 40, 873, 1209
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 621
BsiSI CCGG 6 cut(s) 69, 232, 622, 870, 984, 1271
BslFI GGGAC 1 cut(s) 1082
BslI CCNNNNNNNGG 3 cut(s) 71, 415, 686
BsmAI GTCTC 2 cut(s) 117, 461
BsmBI CGTCTC 2 cut(s) 117, 461
BsmFI GGGAC 1 cut(s) 1082
BsnI GGCC 3 cut(s) 40, 873, 1209
Bsp1286I GDGCHC 2 cut(s) 621, 1055
Bsp13I TCCGGA 1 cut(s) 621
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 4 cut(s) 247, 282, 969, 1234
Bsp1720I GCTNAGC 1 cut(s) 1054
BspACI CCGC 4 cut(s) 424, 484, 586, 777
BspANI GGCC 3 cut(s) 40, 873, 1209
BspCNI CTCAG 4 cut(s) 277, 823, 1055, 1067
BspDI ATCGAT 1 cut(s) 285
BspEI TCCGGA 1 cut(s) 621
BspFNI CGCG 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 1165
BspPI GGATC 2 cut(s) 290, 964
BsrDI GCAATG 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 6 cut(s) 302, 496, 574, 913, 921, 1007
BssECI CCNNGG 2 cut(s) 230, 1065
BssMI GATC 4 cut(s) 247, 282, 969, 1234
BssNI GRCGYC 2 cut(s) 235, 824
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 1066
Bst4CI ACNGT 6 cut(s) 56, 165, 258, 331, 1123, 1277
Bst6I CTCTTC 2 cut(s) 231, 960
BstACI GRCGYC 2 cut(s) 235, 824
BstAPI GCANNNNNTGC 1 cut(s) 605
BstAUI TGTACA 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 5 cut(s) 264, 744, 831, 1042, 1054
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 2 cut(s) 241, 1012
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 2 cut(s) 515, 1012
BstKTI GATC 4 cut(s) 250, 285, 972, 1237
BstMAI GTCTC 2 cut(s) 117, 461
BstMBI GATC 4 cut(s) 247, 282, 969, 1234
BstMWI GCNNNNNNNGC 2 cut(s) 204, 605
BstNI CCWGG 1 cut(s) 1066
BstPI GGTNACC 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 230, 983, 1064
BstSFI CTRYAG 1 cut(s) 330
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 493, 994
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 969
BstYI RGATCY 1 cut(s) 969
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 3 cut(s) 40, 873, 1209
BsuTUI ATCGAT 1 cut(s) 285
BtsCI GGATG 2 cut(s) 241, 1012
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 1165
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 2 cut(s) 515, 1012
Cfr13I GGNCC 2 cut(s) 161, 709
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 2 cut(s) 224, 813
Csp6I GTAC 5 cut(s) 340, 385, 811, 1000, 1138
CviAII CATG 2 cut(s) 844, 851
CviQI GTAC 5 cut(s) 340, 385, 811, 1000, 1138
DdeI CTNAG 5 cut(s) 264, 744, 831, 1042, 1054
DpnI GATC 4 cut(s) 249, 284, 971, 1236
DpnII GATC 4 cut(s) 247, 282, 969, 1234
EaeI YGGCCR 2 cut(s) 38, 871
Eam1104I CTCTTC 2 cut(s) 231, 960
EarI CTCTTC 2 cut(s) 231, 960
Ecl136II GAGCTC 1 cut(s) 619
Eco147I AGGCCT 1 cut(s) 1209
Eco24I GRGCYC 2 cut(s) 621, 1055
Eco47I GGWCC 2 cut(s) 161, 709
Eco53kI GAGCTC 1 cut(s) 619
Eco72I CACGTG 1 cut(s) 667
Eco91I GGTNACC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 619
EcoO65I GGTNACC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 1064
EcoT38I GRGCYC 2 cut(s) 621, 1055
Esp3I CGTCTC 2 cut(s) 117, 461
FaeI CATG 2 cut(s) 847, 854
FalI AAGNNNNNCTT 4 cut(s) 34, 66, 719, 751
FaqI GGGAC 1 cut(s) 1082
FatI CATG 2 cut(s) 843, 850
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 3 cut(s) 482, 485, 1008
FokI GGATG 2 cut(s) 228, 999
FriOI GRGCYC 2 cut(s) 621, 1055
Fsp4HI GCNGC 3 cut(s) 482, 485, 1008
FspBI CTAG 1 cut(s) 1088
FspI TGCGCA 2 cut(s) 514, 1011
GlaI GCGC 2 cut(s) 514, 1011
GluI GCNGC 3 cut(s) 482, 485, 1008
GsaI CCCAGC 2 cut(s) 656, 704
GsuI CTGGAG 2 cut(s) 285, 513
HaeIII GGCC 3 cut(s) 40, 873, 1209
HapII CCGG 6 cut(s) 69, 232, 622, 870, 984, 1271
HgaI GACGC 2 cut(s) 224, 813
HhaI GCGC 2 cut(s) 515, 1012
Hin1I GRCGYC 2 cut(s) 235, 824
Hin1II CATG 2 cut(s) 847, 854
Hin6I GCGC 2 cut(s) 513, 1010
HinP1I GCGC 2 cut(s) 513, 1010
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 2 cut(s) 48, 312
HinfI GANTC 9 cut(s) 13, 90, 170, 182, 220, 287, 324, 802, 1070
HpaII CCGG 6 cut(s) 69, 232, 622, 870, 984, 1271
HphI GGTGA 3 cut(s) 68, 767, 1091
Hpy166II GTNNAC 3 cut(s) 239, 716, 1082
Hpy188I TCNGA 8 cut(s) 169, 267, 292, 832, 1020, 1118, 1144, 1255
Hpy8I GTNNAC 3 cut(s) 239, 716, 1082
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 2 cut(s) 520, 1220
HpyCH4III ACNGT 6 cut(s) 56, 165, 258, 331, 1123, 1277
HpyCH4IV ACGT 2 cut(s) 501, 666
HpyCH4V TGCA 4 cut(s) 481, 599, 1160, 1197
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 605
HpyF3I CTNAG 5 cut(s) 264, 744, 831, 1042, 1054
HpySE526I ACGT 2 cut(s) 501, 666
Hsp92I GRCGYC 2 cut(s) 235, 824
Hsp92II CATG 2 cut(s) 847, 854
HspAI GCGC 2 cut(s) 513, 1010
Kpn2I TCCGGA 1 cut(s) 621
Kzo9I GATC 4 cut(s) 247, 282, 969, 1234
LmnI GCTCC 2 cut(s) 149, 624
Lsp1109I GCAGC 2 cut(s) 493, 994
LweI GCATC 1 cut(s) 1021
MaeI CTAG 1 cut(s) 1088
MaeII ACGT 2 cut(s) 501, 666
MaeIII GTNAC 4 cut(s) 33, 74, 656, 755
MalI GATC 4 cut(s) 249, 284, 971, 1236
MboI GATC 4 cut(s) 247, 282, 969, 1234
MboII GAAGA 5 cut(s) 180, 218, 252, 455, 977
MflI RGATCY 1 cut(s) 969
MhlI GDGCHC 2 cut(s) 621, 1055
MluCI AATT 5 cut(s) 361, 880, 1109, 1223, 1256
MlyI GAGTC 2 cut(s) 811, 1064
MroI TCCGGA 1 cut(s) 621
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 2 cut(s) 1047, 1279
MslI CAYNNNNRTG 2 cut(s) 332, 665
MspA1I CMGCKG 1 cut(s) 484
MspI CCGG 6 cut(s) 69, 232, 622, 870, 984, 1271
MspR9I CCNGG 3 cut(s) 232, 985, 1066
MvaI CCWGG 1 cut(s) 1066
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 204, 605
NciI CCSGG 2 cut(s) 232, 985
NdeII GATC 4 cut(s) 247, 282, 969, 1234
NlaIII CATG 2 cut(s) 847, 854
NmuCI GTSAC 3 cut(s) 33, 74, 755
NsbI TGCGCA 2 cut(s) 514, 1011
OliI CACNNNNGTG 1 cut(s) 332
PceI AGGCCT 1 cut(s) 1209
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 7 cut(s) 13, 90, 170, 182, 220, 287, 324
PkrI GCNGC 3 cut(s) 483, 486, 1009
PleI GAGTC 2 cut(s) 810, 1064
PmaCI CACGTG 1 cut(s) 667
PmlI CACGTG 1 cut(s) 667
PpsI GAGTC 2 cut(s) 810, 1064
Ppu21I YACGTR 1 cut(s) 667
PsiI TTATAA 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 1064
PspCI CACGTG 1 cut(s) 667
PspEI GGTNACC 1 cut(s) 74
PspFI CCCAGC 2 cut(s) 652, 700
PspGI CCWGG 1 cut(s) 1064
PspPI GGNCC 2 cut(s) 161, 709
PsuI RGATCY 1 cut(s) 969
RsaI GTAC 5 cut(s) 341, 386, 812, 1001, 1139
RsaNI GTAC 5 cut(s) 340, 385, 811, 1000, 1138
RseI CAYNNNNRTG 2 cut(s) 332, 665
SacI GAGCTC 1 cut(s) 621
SaqAI TTAA 2 cut(s) 1047, 1279
SatI GCNGC 3 cut(s) 482, 485, 1008
Sau3AI GATC 4 cut(s) 247, 282, 969, 1234
Sau96I GGNCC 2 cut(s) 161, 709
SchI GAGTC 2 cut(s) 811, 1064
ScrFI CCNGG 3 cut(s) 232, 985, 1066
SduI GDGCHC 2 cut(s) 621, 1055
SfaNI GCATC 1 cut(s) 1021
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 161, 709
SmiMI CAYNNNNRTG 2 cut(s) 332, 665
SmlI CTYRAG 3 cut(s) 309, 410, 614
SmoI CTYRAG 3 cut(s) 309, 410, 614
Sse9I AATT 5 cut(s) 361, 880, 1109, 1223, 1256
SseBI AGGCCT 1 cut(s) 1209
SsiI CCGC 4 cut(s) 424, 484, 586, 777
SspMI CTAG 1 cut(s) 1088
SstI GAGCTC 1 cut(s) 621
StuI AGGCCT 1 cut(s) 1209
StyD4I CCNGG 3 cut(s) 230, 983, 1064
TaaI ACNGT 6 cut(s) 56, 165, 258, 331, 1123, 1277
TaiI ACGT 2 cut(s) 504, 669
TaqI TCGA 3 cut(s) 285, 504, 1106
TasI AATT 5 cut(s) 361, 880, 1109, 1223, 1256
TatI WGTACW 2 cut(s) 384, 810
TauI GCSGC 1 cut(s) 487
TfiI GAWTC 7 cut(s) 13, 90, 170, 182, 220, 287, 324
Tru1I TTAA 2 cut(s) 1047, 1279
Tru9I TTAA 2 cut(s) 1047, 1279
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 3 cut(s) 33, 74, 755
TseI GCWGC 2 cut(s) 481, 1007
Tsp45I GTSAC 3 cut(s) 33, 74, 755
TspDTI ATGAA 2 cut(s) 72, 354
TspGWI ACGGA 3 cut(s) 113, 701, 962
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 161, 709
XapI RAATTY 3 cut(s) 361, 1109, 1256
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.